Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0684000 | OGI:07079110 | 12/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:29008876-29009943 | ||||||||
| Gene Symbol | EULS2, OsEULS2 | ||||||||||
| DNA seq | AGCACATCAACGATCGAACGAACAACGCACTCTGCAGCTAGCTATACAATCTCTGTTTAATTAGCTAGGTAGCTAGCGAGTCATAAATCAAGAAGCCATGGACTTTTACGGGCGGCGCGAGCAGTACGGCGGGTATGGCGGGTACGGTGGCGGCGGCGCCCTGGCGACGCCGGGGTACGCGCCGGCGGCGCCGTACGGGATGTCGCAGGTGAACATCGAGGGGAACGGGTGTGGCAGGACGCTGCCGCCGCAGCCGACGGTGAAGGTGTACTGCCGGGCGAACCCGAACTACGCGATGACGGCGCGGAACGGCGCGGTGGTGCTGGCGCCGGCGAACCCCAAGGACGAGTACCAGCATTGGATCAAGGACATGAGGTGGAGCACCAGCATCAAGGACGAGGAGGGCTACCCTGCCTTCGCCCTCGTCAACAAGGCCACCGGCCAGGCCATCAAGCACTCCCTCGGCCAGTCACACCCTGTAAGCTAGTCTCAGCGTTCTTTCTCTGAATCTGAATCCGCCGGCCATTGATGGCGATCGACGACGATGCTCTTGCGTGCAGGTGAGGCTGGTGCCGTACAACCCGGAGGTGATGGACGAGTCGGTGCTGTGGACGGAGAGCCGCGACGTGGGGAACGGGTTCAGGTGCATCCGCATGGTGAACAACATCTACCTCAACTTCGACGCCTTCCACGGCGACAAGTACCACGGCGGCGTCCGCGACGGCACCGACATCGTGCTCTGGAAGTGGTGCGAGGGCGACAACCAGCGCTGGAAGATCCAGCCCTACTACTGAGCTGATCGATACATCGATCCAGCTCTCTATCAAGGCTCAAGTTGATATCAACGAATCTGGTGCAGAATAATTATTCTCTGCTAGCTACCCACCTATATACGTAGCTAAGAGTAACTTATGCTCGTCCGTACCGTATGATTATCGTGTGGTGTGCTTGTATCTTGTACAAGTTAATTAATTACCTGGCAATAAGAGCTCCTCTCGCTGGGCGACACATATATAAACACATACAGTTGGGGCTTGATTCAACTTGCATATATGCTGTGCATATGCG
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| CDS seq | ATGGACTTTTACGGGCGGCGCGAGCAGTACGGCGGGTATGGCGGGTACGGTGGCGGCGGCGCCCTGGCGACGCCGGGGTACGCGCCGGCGGCGCCGTACGGGATGTCGCAGGTGAACATCGAGGGGAACGGGTGTGGCAGGACGCTGCCGCCGCAGCCGACGGTGAAGGTGTACTGCCGGGCGAACCCGAACTACGCGATGACGGCGCGGAACGGCGCGGTGGTGCTGGCGCCGGCGAACCCCAAGGACGAGTACCAGCATTGGATCAAGGACATGAGGTGGAGCACCAGCATCAAGGACGAGGAGGGCTACCCTGCCTTCGCCCTCGTCAACAAGGCCACCGGCCAGGCCATCAAGCACTCCCTCGGCCAGTCACACCCTGTGAGGCTGGTGCCGTACAACCCGGAGGTGATGGACGAGTCGGTGCTGTGGACGGAGAGCCGCGACGTGGGGAACGGGTTCAGGTGCATCCGCATGGTGAACAACATCTACCTCAACTTCGACGCCTTCCACGGCGACAAGTACCACGGCGGCGTCCGCGACGGCACCGACATCGTGCTCTGGAAGTGGTGCGAGGGCGACAACCAGCGCTGGAAGATCCAGCCCTACTACTGA
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| Protein seq | MDFYGRREQYGGYGGYGGGGALATPGYAPAAPYGMSQVNIEGNGCGRTLPPQPTVKVYCRANPNYAMTARNGAVVLAPANPKDEYQHWIKDMRWSTSIKDEEGYPAFALVNKATGQAIKHSLGQSHPVRLVPYNPEVMDESVLWTESRDVGNGFRCIRMVNNIYLNFDAFHGDKYHGGVRDGTDIVLWKWCEGDNQRWKIQPYY |
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| Function | Ricin B-like lectin R40G3 [UniProtKB/Swiss-Prot:Q6Z4N4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0684000 | Os07t0684000-01 | Chr07 | 29008876 | 29009943 | + | irgsp1_rep | ||
| CDS seq | ATGGACTTTTACGGGCGGCGCGAGCAGTACGGCGGGTATGGCGGGTACGGTGGCGGCGGCGCCCTGGCGACGCCGGGGTACGCGCCGGCGGCGCCGTACGGGATGTCGCAGGTGAACATCGAGGGGAACGGGTGTGGCAGGACGCTGCCGCCGCAGCCGACGGTGAAGGTGTACTGCCGGGCGAACCCGAACTACGCGATGACGGCGCGGAACGGCGCGGTGGTGCTGGCGCCGGCGAACCCCAAGGACGAGTACCAGCATTGGATCAAGGACATGAGGTGGAGCACCAGCATCAAGGACGAGGAGGGCTACCCTGCCTTCGCCCTCGTCAACAAGGCCACCGGCCAGGCCATCAAGCACTCCCTCGGCCAGTCACACCCTGTGAGGCTGGTGCCGTACAACCCGGAGGTGATGGACGAGTCGGTGCTGTGGACGGAGAGCCGCGACGTGGGGAACGGGTTCAGGTGCATCCGCATGGTGAACAACATCTACCTCAACTTCGACGCCTTCCACGGCGACAAGTACCACGGCGGCGTCCGCGACGGCACCGACATCGTGCTCTGGAAGTGGTGCGAGGGCGACAACCAGCGCTGGAAGATCCAGCCCTACTACTGA
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| Protein seq | MDFYGRREQYGGYGGYGGGGALATPGYAPAAPYGMSQVNIEGNGCGRTLPPQPTVKVYCRANPNYAMTARNGAVVLAPANPKDEYQHWIKDMRWSTSIKDEEGYPAFALVNKATGQAIKHSLGQSHPVRLVPYNPEVMDESVLWTESRDVGNGFRCIRMVNNIYLNFDAFHGDKYHGGVRDGTDIVLWKWCEGDNQRWKIQPYY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0684000 | RBH | 35.352184 | 34.051929 | 25.043268 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48500 | RBH | 23.799280 | 22.826586 | 6.425378 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0327600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0028010 | SBH | 0.0 | 0.0 | 0.788490 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028050 | SBH | 0.777440 | 0.0 | 1.757496 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027860 | RBH | 23.725157 | 2.245179 | 42.624393 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027640 | SBH | 0.088809 | 0.036607 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027960 | RBH | 112.499832 | 0.0 | 113.432549 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0472100 | RBH | 86.6748235 | 1.891014 | 3.626767 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028390 | RBH | 7.227032 | 0.153637 | 11.977458 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0486100 | RBH | 89.017178 | 0.58194 | 0.66579 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027680 | RBH | 6.483273 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0028130 | RBH | 21.330341 | 12.141272 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027850 | RBH | 155.097427 | 19.076283 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028180 | RBH | 8.432530 | 0.457771 | 21.792671 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027740 | RBH | 2.251498 | 5.312904 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027800 | SBH | 0.647617 | 0.560445 | 4.268677 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027560 | RBH | 16.745306 | 3.782821 | 74.497002 |
