Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
Os07g0681300		OGI:07078840 \| 16/16			Nipponbare \| IRGSP 1.0 \| RAP-db			Chr07:28882173-28886338		Homologues MicroCollinearity RGI-JBrowse RAP-DB Ricevarmap2
Gene Symbol		CYP714B1, OsCYP714B1
DNA seq		AGATCGAGATATCGACATGGTGGTGGTGGTGGCGGCGGCCATGGCGGCGGCGAGCTTGTGCTGCGGCGTGGCGGCGTACCTCTACTACGTCCTGTGGCTGGCGCCGGAGAGGCTCCGCGCCCACCTGAGAAGACAAGGGATCGGCGGCCCAACCCCGTCCTTCCCTTACGGCAACCTCGCCGACATGAGGAGCCACGCCGCCGCCGCCGCCGGCGGCAAGGCTACCGGAGAAGGACGACAAGAAGGCGACATCGTGCACGACTACCGGCAGGCCGTCTTCCCCTTCTACGAGAATTGGAGAAAACAATACGGTACGCACGTGTATATCGATCAACGATCATATATCCCTGCTAGCTGCTGTTTGATTGGTTGCATGCTACTACTGCTCTGCCCATGCTGTGTGATCTTCGTCTTCCTGCCTCTACATAAAACAGAACTCACCCTGATTTAGAACAAGAAAAGAATAATAACAGAATTGCTAGGTTTCTTGCGACATTTTTTTTTTTGAAAGAAAACTTTTGATTTTTGGACCGTTAGAACTGCTATAAGATTCATGTAGGAAAGTTATAATGTGATTGTACCTTTGCTATATTTGATTTTTTTTAAAAAAAAATTGCGCCAGATTTTTAAGATAGTTTTTTTAGGGGAAAAGGAGATATATTACTCATATATGGCGTCAACACGCGCTAAATGCATGATGAAATTACAACTGTTTCCTAGCCAAACATTTGACAAGGATTCACATCTAGCTTTATTTGCTAACAAATGACTGATCCCATTTTGGCTGCCATGGATCTTCATTAGCTTAATCTCCCTGCTCCCAGAAAGGAGATAGTTAGGTCATGTGTGTGTAAGGAAGAAGAATCTGCCCGGTGGTAAAGGAGTAATCAACGGCTGTAATCAATCGATTTAATTACTAATAATCATTAGTATTAATCATTTCCAACTTTCGGTAATGAATGGATTTAAATATATATAGTGAAGATTTGGTTCTTTCTACAAAGTAAATAGTGGAGTACTACTACTATATATGAAAAGTTTCAGAGTACGTATACTATACGTCCGTTCATTAATAGAGCAACAAAAGCATATGCATGCTGATAGGAAAGTTTATCTATCCCTCGTTTTTGCATGCTGACTGTAAATACTGCATATATGTAAAGTCAAATTTATTTTTTAATCTATGCAAGTAGAATTTAAACATGCATTTAAGTATAACGATACTACTATATCTATATTATTAAATATTTTCTTATGACTTACTAAGTGATATGCACCAAACAAGGAGCCGTCTCCTTTAGGGTAGTTGTCGATTTCGAGCATTCATATCAATTGAAAAAGTTATTACAAAAATTAAAAAAAAACAAGTCACTCATAAAGTGTTATTCATGTTTTATCATCTAATAACAACAAAAATATTAATCATAAAAAGAATTAAATAAAACGGACGGTCAAACGTTGAAAAAAAACCCACAACTATATTTAGAATGAGACAGAGGAAGTAATTGATACCAGTAGTGCAATATAGGGCATGTTTAGATCCCCTAGCAAAATTTTACATCCTATCACATCGAATGTTTGTACAAATGCATTGAGTATTAAATATAAACGAAAAAATAACTAATTGCACAGATTACGTATAAATTGCGAGACGAATCTTTAAAGCCTAATTGCGCCATGATTTGACAACGTGGTGCTACAATATACATTTGCTAATGACGGATTAATTAGGCTTAACAAATTCGTCTCGCGGTTTACAGACGGATTATATCATTTATTTTGTTATTAGACTACGTTTAATACTTTAAATGCATCCATATATCCGATGTGACATATCAAAACTTTATCCCATATATCTAAACACAGCCATAGCATTATTGAGCCGTCAGAATCATGGGCAGTCTCTGTGGTGTTTTGTACTGTGTCTGGGTTTGCTTCATTTAATTGCACCGAGTTCCATCGACGAGCTAGCGATAGAGAGATTTGCCATGGTATGTCATTACCACGGGAAAGTTGTGTCCTTTTCAGGAATCGTAGCTTGCCAGCGTTGCACGCACAGCCAGCCACTGTACGACTGTCTAGATAGCCGGCCGATTGCACGACGTGATCGATCGAAATATATTTTCCTCGTCGATTGATAGCGAAGTTCATGTAACTAGCAAACAGCAGCACGATCTCAGCTCACATGAACCAGCAAATTATAAACATGCCCCCAGTTTGGAGCAAATTAAACGGCTCCAGGCATACGTGCGGTGTACTCCTGTTCATAAATGACCTGCGCGCACTGCAGCTAGCTAGTGCAGGTGTGTGACTCTTTGATGTGGATTTGATCCGTCCTCCCGATCCGCTAGCGTCAATGGAGGAGCTACCCAGCTTTCATGTCAGCTAGTGTAGTTTTGTCATGTTGTGAACATTCGTCCAAGTAGACTAATGGTATATTACTACCTTCATTTCATATTACAAATCGCTTTAATTTTTTTCTAGTCTAATTTCTTTTTAGTTCTTTCAGTAAAGGGAACGAAGAATATAGCGTGTACTTTCAATTTCCAAGCACATGTTTAGATAAAAGGGATAGTTTGAAAGCTTTGTAACCGACTGGTGCATCTTAATTTTGCTCTTGGTGTTAGGCCCGGTATTCACGTATTCAGTAGGGAACATGGTGTTCCTGCACGTGAGCCGGCCGGACATAGTCCGGGAGCTGAGCCTGTGCGTGTCGCTGGACCTCGGCAAGAGCTCGTACATGAAGGCCACGCACCAGCCTCTCTTCGGCGAGGGCATCCTCAAGTCCAACGGCAACGCCTGGGCTCACCAGAGAAAGCTCATTGCCCCCGAGTTCTTCCCCGACAAGGTCAAGGTCGGTGTATCTTCTCAAGGATAGTAAAATCACTGGCTCGTTAATTAATCTTCCAAACAACATCTGCAAGCTTAGTTTGCAAATGATCGATCGATCTGATGTATTTTCACTAACAAATTAGTGTCTCTTAATATGCAAATGTGATCATGTAGGGTATGGTCGATCTGATGGTGGACTCGGCACAGGTCCTAGTCAGTTCATGGGAAGACAGGATTGACAGAAGTGGCGGGAATGCACTGGACCTGATGATTGACGATGACATCAGGGCATACTCTGCTGATGTGATCTCCAGGACATGCTTCGGTAGCAGCTACGTGAAAGGCAAGCAGATCTTCGACATGATCAGGGAGCTGCAGAAGACGGTGTCCACCAAGAAGCAGAACCTGCTCGCCGAGATGACCGGGCTCAGCTTCCTCTTCCCGAAGGCGAGCGGCCGCGCGGCGTGGCGGCTCAACGGGCGTGTCCGCGCCCTGATACTCGACCTCGTCGGAGAGAACGGGGAGGAGGACGGTGGCAACCTCCTCAGCGCGATGCTCCGGAGCGCCAGAGGCGGCGGCGGTGGCGGCGGCGAGGTCGCCGCCGCGGCCGAGGACTTCGTTGTGGACAACTGCAAGAACATCTACTTCGCCGGGTACGAGAGCACGGCGGTCACCGCCGCGTGGTGCTTGATGCTGCTCGCGCTTCACCCTGAGTGGCAGGACCGGGTGCGAGACGAGGTGCAGGCGGCGTGCTGCGGCGGCGGCGGACGGTCGCCGGACTTCCCGGCACTGCAGAAGATGAAGAACGTACGCCGCCGACACGCATCAAATTGTTGGCATTGAAGCTCGCCGAAGCTGATATGATCGTGCTGTTTAATTTGCAGCTGACGATGGTGATCCAGGAGACGCTGCGGCTGTACCCGGCGGGCGCGGTGGTGTCGCGGCAGGCGCTGCGGGAGCTCAGCCTCGGCGGCGTGCGCGTGCCGAGGGGCGTCAACATCTACGTCCCGGTCTCGACGCTGCACCTGGACGCGGAGCTGTGGGGGGGCGGCGCCGGCGCGGCGGAGTTCGACCCGGCGCGGTTCGCCGACGCCCGGCCGCCGCTGCACGCGTACCTGCCGTTCGGCGCCGGCGCGCGCACCTGCCTCGGCCAGACCTTCGCCATGGCAGAGCTCAAGGTGCTCCTCTCGCTCGTGCTCTGCAGGTTCGAGGTGGCGCTGTCGCCGGAGTACGTGCACTCGCCGGCGCACAAGCTCATCGTGGAGGCCGAGCACGGCGTGCGCCTTGTGCTCAAGAAAGTGCGGTCCAAGTGTGATTGGGCTGGATTTGATTAG More
CDS seq		ATGGTGGTGGTGGTGGCGGCGGCCATGGCGGCGGCGAGCTTGTGCTGCGGCGTGGCGGCGTACCTCTACTACGTCCTGTGGCTGGCGCCGGAGAGGCTCCGCGCCCACCTGAGAAGACAAGGGATCGGCGGCCCAACCCCGTCCTTCCCTTACGGCAACCTCGCCGACATGAGGAGCCACGCCGCCGCCGCCGCCGGCGGCAAGGCTACCGGAGAAGGACGACAAGAAGGCGACATCGTGCACGACTACCGGCAGGCCGTCTTCCCCTTCTACGAGAATTGGAGAAAACAATACGGCCCGGTATTCACGTATTCAGTAGGGAACATGGTGTTCCTGCACGTGAGCCGGCCGGACATAGTCCGGGAGCTGAGCCTGTGCGTGTCGCTGGACCTCGGCAAGAGCTCGTACATGAAGGCCACGCACCAGCCTCTCTTCGGCGAGGGCATCCTCAAGTCCAACGGCAACGCCTGGGCTCACCAGAGAAAGCTCATTGCCCCCGAGTTCTTCCCCGACAAGGTCAAGGGTATGGTCGATCTGATGGTGGACTCGGCACAGGTCCTAGTCAGTTCATGGGAAGACAGGATTGACAGAAGTGGCGGGAATGCACTGGACCTGATGATTGACGATGACATCAGGGCATACTCTGCTGATGTGATCTCCAGGACATGCTTCGGTAGCAGCTACGTGAAAGGCAAGCAGATCTTCGACATGATCAGGGAGCTGCAGAAGACGGTGTCCACCAAGAAGCAGAACCTGCTCGCCGAGATGACCGGGCTCAGCTTCCTCTTCCCGAAGGCGAGCGGCCGCGCGGCGTGGCGGCTCAACGGGCGTGTCCGCGCCCTGATACTCGACCTCGTCGGAGAGAACGGGGAGGAGGACGGTGGCAACCTCCTCAGCGCGATGCTCCGGAGCGCCAGAGGCGGCGGCGGTGGCGGCGGCGAGGTCGCCGCCGCGGCCGAGGACTTCGTTGTGGACAACTGCAAGAACATCTACTTCGCCGGGTACGAGAGCACGGCGGTCACCGCCGCGTGGTGCTTGATGCTGCTCGCGCTTCACCCTGAGTGGCAGGACCGGGTGCGAGACGAGGTGCAGGCGGCGTGCTGCGGCGGCGGCGGACGGTCGCCGGACTTCCCGGCACTGCAGAAGATGAAGAACCTGACGATGGTGATCCAGGAGACGCTGCGGCTGTACCCGGCGGGCGCGGTGGTGTCGCGGCAGGCGCTGCGGGAGCTCAGCCTCGGCGGCGTGCGCGTGCCGAGGGGCGTCAACATCTACGTCCCGGTCTCGACGCTGCACCTGGACGCGGAGCTGTGGGGGGGCGGCGCCGGCGCGGCGGAGTTCGACCCGGCGCGGTTCGCCGACGCCCGGCCGCCGCTGCACGCGTACCTGCCGTTCGGCGCCGGCGCGCGCACCTGCCTCGGCCAGACCTTCGCCATGGCAGAGCTCAAGGTGCTCCTCTCGCTCGTGCTCTGCAGGTTCGAGGTGGCGCTGTCGCCGGAGTACGTGCACTCGCCGGCGCACAAGCTCATCGTGGAGGCCGAGCACGGCGTGCGCCTTGTGCTCAAGAAAGTGCGGTCCAAGTGTGATTGGGCTGGATTTGATTAG More
Protein seq		MVVVVAAAMAAASLCCGVAAYLYYVLWLAPERLRAHLRRQGIGGPTPSFPYGNLADMRSHAAAAAGGKATGEGRQEGDIVHDYRQAVFPFYENWRKQYGPVFTYSVGNMVFLHVSRPDIVRELSLCVSLDLGKSSYMKATHQPLFGEGILKSNGNAWAHQRKLIAPEFFPDKVKGMVDLMVDSAQVLVSSWEDRIDRSGGNALDLMIDDDIRAYSADVISRTCFGSSYVKGKQIFDMIRELQKTVSTKKQNLLAEMTGLSFLFPKASGRAAWRLNGRVRALILDLVGENGEEDGGNLLSAMLRSARGGGGGGGEVAAAAEDFVVDNCKNIYFAGYESTAVTAAWCLMLLALHPEWQDRVRDEVQAACCGGGGRSPDFPALQKMKNLTMVIQETLRLYPAGAVVSRQALRELSLGGVRVPRGVNIYVPVSTLHLDAELWGGGAGAAEFDPARFADARPPLHAYLPFGAGARTCLGQTFAMAELKVLLSLVLCRFEVALSPEYVHSPAHKLIVEAEHGVRLVLKKVRSKCDWAGFD
Function		Cytochrome P450 714B1 [UniProtKB/Swiss-Prot:Q7XHW5]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
Os07g0681300	Os07t0681300-00	Chr07	28882173	28886338	+	irgsp1_rep
CDS seq	ATGGTGGTGGTGGTGGCGGCGGCCATGGCGGCGGCGAGCTTGTGCTGCGGCGTGGCGGCGTACCTCTACTACGTCCTGTGGCTGGCGCCGGAGAGGCTCCGCGCCCACCTGAGAAGACAAGGGATCGGCGGCCCAACCCCGTCCTTCCCTTACGGCAACCTCGCCGACATGAGGAGCCACGCCGCCGCCGCCGCCGGCGGCAAGGCTACCGGAGAAGGACGACAAGAAGGCGACATCGTGCACGACTACCGGCAGGCCGTCTTCCCCTTCTACGAGAATTGGAGAAAACAATACGGCCCGGTATTCACGTATTCAGTAGGGAACATGGTGTTCCTGCACGTGAGCCGGCCGGACATAGTCCGGGAGCTGAGCCTGTGCGTGTCGCTGGACCTCGGCAAGAGCTCGTACATGAAGGCCACGCACCAGCCTCTCTTCGGCGAGGGCATCCTCAAGTCCAACGGCAACGCCTGGGCTCACCAGAGAAAGCTCATTGCCCCCGAGTTCTTCCCCGACAAGGTCAAGGGTATGGTCGATCTGATGGTGGACTCGGCACAGGTCCTAGTCAGTTCATGGGAAGACAGGATTGACAGAAGTGGCGGGAATGCACTGGACCTGATGATTGACGATGACATCAGGGCATACTCTGCTGATGTGATCTCCAGGACATGCTTCGGTAGCAGCTACGTGAAAGGCAAGCAGATCTTCGACATGATCAGGGAGCTGCAGAAGACGGTGTCCACCAAGAAGCAGAACCTGCTCGCCGAGATGACCGGGCTCAGCTTCCTCTTCCCGAAGGCGAGCGGCCGCGCGGCGTGGCGGCTCAACGGGCGTGTCCGCGCCCTGATACTCGACCTCGTCGGAGAGAACGGGGAGGAGGACGGTGGCAACCTCCTCAGCGCGATGCTCCGGAGCGCCAGAGGCGGCGGCGGTGGCGGCGGCGAGGTCGCCGCCGCGGCCGAGGACTTCGTTGTGGACAACTGCAAGAACATCTACTTCGCCGGGTACGAGAGCACGGCGGTCACCGCCGCGTGGTGCTTGATGCTGCTCGCGCTTCACCCTGAGTGGCAGGACCGGGTGCGAGACGAGGTGCAGGCGGCGTGCTGCGGCGGCGGCGGACGGTCGCCGGACTTCCCGGCACTGCAGAAGATGAAGAACCTGACGATGGTGATCCAGGAGACGCTGCGGCTGTACCCGGCGGGCGCGGTGGTGTCGCGGCAGGCGCTGCGGGAGCTCAGCCTCGGCGGCGTGCGCGTGCCGAGGGGCGTCAACATCTACGTCCCGGTCTCGACGCTGCACCTGGACGCGGAGCTGTGGGGGGGCGGCGCCGGCGCGGCGGAGTTCGACCCGGCGCGGTTCGCCGACGCCCGGCCGCCGCTGCACGCGTACCTGCCGTTCGGCGCCGGCGCGCGCACCTGCCTCGGCCAGACCTTCGCCATGGCAGAGCTCAAGGTGCTCCTCTCGCTCGTGCTCTGCAGGTTCGAGGTGGCGCTGTCGCCGGAGTACGTGCACTCGCCGGCGCACAAGCTCATCGTGGAGGCCGAGCACGGCGTGCGCCTTGTGCTCAAGAAAGTGCGGTCCAAGTGTGATTGGGCTGGATTTGATTAG More
Protein seq	MVVVVAAAMAAASLCCGVAAYLYYVLWLAPERLRAHLRRQGIGGPTPSFPYGNLADMRSHAAAAAGGKATGEGRQEGDIVHDYRQAVFPFYENWRKQYGPVFTYSVGNMVFLHVSRPDIVRELSLCVSLDLGKSSYMKATHQPLFGEGILKSNGNAWAHQRKLIAPEFFPDKVKGMVDLMVDSAQVLVSSWEDRIDRSGGNALDLMIDDDIRAYSADVISRTCFGSSYVKGKQIFDMIRELQKTVSTKKQNLLAEMTGLSFLFPKASGRAAWRLNGRVRALILDLVGENGEEDGGNLLSAMLRSARGGGGGGGEVAAAAEDFVVDNCKNIYFAGYESTAVTAAWCLMLLALHPEWQDRVRDEVQAACCGGGGRSPDFPALQKMKNLTMVIQETLRLYPAGAVVSRQALRELSLGGVRVPRGVNIYVPVSTLHLDAELWGGGAGAAEFDPARFADARPPLHAYLPFGAGARTCLGQTFAMAELKVLLSLVLCRFEVALSPEYVHSPAHKLIVEAEHGVRLVLKKVRSKCDWAGFD More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0681300	RBH	0.0	0.0	1.549083
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g48330	RBH	0.0	0.0	0.521554
Nipponbare \| IRGSP 1.0 \| RAP-db	Os03g0332100	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0027900	RBH	0.0	0.0	1.027160
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0027940	RBH	0.068515	0.0	2.873484
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0027720	RBH	0.446100	0.0	6.145633
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0027530	RBH	0.0	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0027820	RBH	0.0	0.0	6.938199
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0469800	RBH	0.847644	0.040103	0.025352
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0028270	RBH	0.111930	0.0	0.499496
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0484100	RBH	0.5579365	0	0.539874
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0027550	RBH	0.026922	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0028010	RBH	0.282396	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0027730	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0028050	RBH	0.084372	0.0	1.508856
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0027620	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G027680	RBH	0.073850	0.0	2.228982
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0027430	RBH	0.000000	0.0	9.078453

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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