Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0680900 | OGI:07078790 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:28857663-28859508 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCACCTTTGGCTGAGTCCAATGAGGGGGTTTACAATGATCCTATTGTCATCATCAAGCGATCTCATTCTCTTGTTGGTCCAACATCACTTGTTAGCCAGTCCCTGCGACTTAGCAATCTCACTCTAAATAAAACAGAGGGGTCATCAGAACCTGCAGAAGAAAAGGAAAGGAACCTAGGGCAGCTCAGTGATGAAGAGTTTGACAATGCCACAACAGAAAATGAAGGTATTGGGCTTGATGACTTTGAAATCTTGAAGCTTGTAGGCCAAGGGGCATTTGGGAAAGTCTTTCAGGTGAGAAAGAAAGGTACTTCAGAGATATACGCGATGAAAGTTATGAGGAAGGATAAGATCTTGGAAAAGAACCATGCGGAGTACATGAAAGCCGAAAGAGATATATTAACAAAAGTTGACCATCCTTTTGTAGTGCAGCTCAGGTACTCCTTTCAGGTACGTGTGTACATCAATGTTCTTATCTCTATGTTGAAATCACTTTTAGTGATATCTTAGTACCTATGTTTGAACACAGACAAAATATCGACTTTATCTTGTCCTGGACTTCATAAATGGGGGACATCTCTTCTTCCAGCTCTACAAGCAAGGATTGTTCAGGTGACTGTATACTTCTAGCTAGTACTTTTGTCTGTCAAAAGAAAATGTTTCCGGCCCTATAACTCAACCGTTTTGTTTAACAGGGAGGAACTTGCACGGATCTATACTGCTGAAATTGTATCTGCTGTAGCTCACCTTCACGACAACGGGATTATGCATAGAGATCTCAAGCCTGAAAATATCCTTTTGGATGCTGATGGCCATGTAAGAATGCCTTCTTCAACAATCTCCTCCTGCTACTTCTTTTCCATTTTGCTGATATCTTTTTTGTTGCCTCATTTCAAGGCCATGCTCACTGACTTTGGCCTTGCCAAAGAATTTAATGAGAATACAAGATCAAACTCGATGTGTGGAACAGTTGAGTATATGGCCCCAGAGATTATTCTTGGTCGGGGGCATGATAAGGCAGCTGACTGGTGGAGTGTTGGAATCCTCCTCTTTGAAATGCTCACGGGAAAGGTGTGCTGCCAACTTGCATGAGAGGGTAATCTTCCCATTTGCATTCATTCATTGCTAAATAATCCCTTACTCTTTGCAACACGCTGCAGCCTCCGTTTGTTGGGAACAGGGATAAAGTTCAGCAGAAGATAGTGAAAGAGAAGCTGAAGCTTCCATCGTTTTTGTCCAGTGAAGCTCATTCCCTCTTGAAAGGAGTAAGTTTCTTAATGCATTCGATCACAGTATCAAATTCCTATGTTGTGTTTCTTATCTGAAAAAGATGGCAATCCGTTGTCCATTTCAGCTGCTCCACAAAGAAGGTGGCAAGCGGCTAGGAAGCGGTCCGGGCGGCAGCGATGAGATAAAGAGGCACAAATGGCTCAAACCGATCAACTGGAGGAAGCTGGAGGCCCGGCAGATCCAGCCGAGCTTCCGACCCAACGTGAGCGGGCTCACCTGCATCGCCAACTTCGACGAGTGCTGGACCAGCATGCCGGTGCTGGACTCGCCGGTGGCCACCCCTGTCGCCGGCGGCGCCGGCCACAGCAGCTTCGCCGGGTTCACCTACGTCAGGCCGGCTCCGTTCCTCCAGGATGTCAAGCCTCCCTCTTCCTCTAGGCTGAAAGACTAGCTAGCAGCCAGTGCGAGTGAAGAAACGGATGAACCAAGAGCAAGGGGAAAGAGGCGAAGGGTAGGAAGTTACTACTAAAATATCTGTAAAAGGACAACTGGTCCATGTGAATGCACTTCCGGAGCTAATCTACCCAGGAGATATGATCCATTTGCTCAGACCCTG
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| CDS seq | GCACCTTTGGCTGAGTCCAATGAGGGGGTTTACAATGATCCTATTGTCATCATCAAGCGATCTCATTCTCTTGTTGGTCCAACATCACTTGTTAGCCAGTCCCTGCGACTTAGCAATCTCACTCTAAATAAAACAGAGGGGTCATCAGAACCTGCAGAAGAAAAGGAAAGGAACCTAGGGCAGCTCAGTGATGAAGAGTTTGACAATGCCACAACAGAAAATGAAGGTATTGGGCTTGATGACTTTGAAATCTTGAAGCTTGTAGGCCAAGGGGCATTTGGGAAAGTCTTTCAGGTGAGAAAGAAAGGTACTTCAGAGATATACGCGATGAAAGTTATGAGGAAGGATAAGATCTTGGAAAAGAACCATGCGGAGTACATGAAAGCCGAAAGAGATATATTAACAAAAGTTGACCATCCTTTTGTAGTGCAGCTCAGGTACTCCTTTCAGACAAAATATCGACTTTATCTTGTCCTGGACTTCATAAATGGGGGACATCTCTTCTTCCAGCTCTACAAGCAAGGATTGTTCAGGGAGGAACTTGCACGGATCTATACTGCTGAAATTGTATCTGCTGTAGCTCACCTTCACGACAACGGGATTATGCATAGAGATCTCAAGCCTGAAAATATCCTTTTGGATGCTGATGGCCATGCCATGCTCACTGACTTTGGCCTTGCCAAAGAATTTAATGAGAATACAAGATCAAACTCGATGTGTGGAACAGTTGAGTATATGGCCCCAGAGATTATTCTTGGTCGGGGGCATGATAAGGCAGCTGACTGGTGGAGTGTTGGAATCCTCCTCTTTGAAATGCTCACGGGAAAGCCTCCGTTTGTTGGGAACAGGGATAAAGTTCAGCAGAAGATAGTGAAAGAGAAGCTGAAGCTTCCATCGTTTTTGTCCAGTGAAGCTCATTCCCTCTTGAAAGGACTGCTCCACAAAGAAGGTGGCAAGCGGCTAGGAAGCGGTCCGGGCGGCAGCGATGAGATAAAGAGGCACAAATGGCTCAAACCGATCAACTGGAGGAAGCTGGAGGCCCGGCAGATCCAGCCGAGCTTCCGACCCAACGTGAGCGGGCTCACCTGCATCGCCAACTTCGACGAGTGCTGGACCAGCATGCCGGTGCTGGACTCGCCGGTGGCCACCCCTGTCGCCGGCGGCGCCGGCCACAGCAGCTTCGCCGGGTTCACCTACGTCAGGCCGGCTCCGTTCCTCCAGGATGTCAAGCCTCCCTCTTCCTCTAGGCTGAAAGACTAG
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| Protein seq | APLAESNEGVYNDPIVIIKRSHSLVGPTSLVSQSLRLSNLTLNKTEGSSEPAEEKERNLGQLSDEEFDNATTENEGIGLDDFEILKLVGQGAFGKVFQVRKKGTSEIYAMKVMRKDKILEKNHAEYMKAERDILTKVDHPFVVQLRYSFQTKYRLYLVLDFINGGHLFFQLYKQGLFREELARIYTAEIVSAVAHLHDNGIMHRDLKPENILLDADGHAMLTDFGLAKEFNENTRSNSMCGTVEYMAPEIILGRGHDKAADWWSVGILLFEMLTGKPPFVGNRDKVQQKIVKEKLKLPSFLSSEAHSLLKGLLHKEGGKRLGSGPGGSDEIKRHKWLKPINWRKLEARQIQPSFRPNVSGLTCIANFDECWTSMPVLDSPVATPVAGGAGHSSFAGFTYVRPAPFLQDVKPPSSSRLKD |
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| Function | Serine/threonine-protein kinase AtPK2/AtPK19 [UniProtKB/Swiss-Prot:Q39030] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0680900 | Os07t0680900-01 | Chr07 | 28857663 | 28859508 | + | irgsp1_rep | ||
| CDS seq | GCACCTTTGGCTGAGTCCAATGAGGGGGTTTACAATGATCCTATTGTCATCATCAAGCGATCTCATTCTCTTGTTGGTCCAACATCACTTGTTAGCCAGTCCCTGCGACTTAGCAATCTCACTCTAAATAAAACAGAGGGGTCATCAGAACCTGCAGAAGAAAAGGAAAGGAACCTAGGGCAGCTCAGTGATGAAGAGTTTGACAATGCCACAACAGAAAATGAAGGTATTGGGCTTGATGACTTTGAAATCTTGAAGCTTGTAGGCCAAGGGGCATTTGGGAAAGTCTTTCAGGTGAGAAAGAAAGGTACTTCAGAGATATACGCGATGAAAGTTATGAGGAAGGATAAGATCTTGGAAAAGAACCATGCGGAGTACATGAAAGCCGAAAGAGATATATTAACAAAAGTTGACCATCCTTTTGTAGTGCAGCTCAGGTACTCCTTTCAGACAAAATATCGACTTTATCTTGTCCTGGACTTCATAAATGGGGGACATCTCTTCTTCCAGCTCTACAAGCAAGGATTGTTCAGGGAGGAACTTGCACGGATCTATACTGCTGAAATTGTATCTGCTGTAGCTCACCTTCACGACAACGGGATTATGCATAGAGATCTCAAGCCTGAAAATATCCTTTTGGATGCTGATGGCCATGCCATGCTCACTGACTTTGGCCTTGCCAAAGAATTTAATGAGAATACAAGATCAAACTCGATGTGTGGAACAGTTGAGTATATGGCCCCAGAGATTATTCTTGGTCGGGGGCATGATAAGGCAGCTGACTGGTGGAGTGTTGGAATCCTCCTCTTTGAAATGCTCACGGGAAAGCCTCCGTTTGTTGGGAACAGGGATAAAGTTCAGCAGAAGATAGTGAAAGAGAAGCTGAAGCTTCCATCGTTTTTGTCCAGTGAAGCTCATTCCCTCTTGAAAGGACTGCTCCACAAAGAAGGTGGCAAGCGGCTAGGAAGCGGTCCGGGCGGCAGCGATGAGATAAAGAGGCACAAATGGCTCAAACCGATCAACTGGAGGAAGCTGGAGGCCCGGCAGATCCAGCCGAGCTTCCGACCCAACGTGAGCGGGCTCACCTGCATCGCCAACTTCGACGAGTGCTGGACCAGCATGCCGGTGCTGGACTCGCCGGTGGCCACCCCTGTCGCCGGCGGCGCCGGCCACAGCAGCTTCGCCGGGTTCACCTACGTCAGGCCGGCTCCGTTCCTCCAGGATGTCAAGCCTCCCTCTTCCTCTAGGCTGAAAGACTAG
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| Protein seq | APLAESNEGVYNDPIVIIKRSHSLVGPTSLVSQSLRLSNLTLNKTEGSSEPAEEKERNLGQLSDEEFDNATTENEGIGLDDFEILKLVGQGAFGKVFQVRKKGTSEIYAMKVMRKDKILEKNHAEYMKAERDILTKVDHPFVVQLRYSFQTKYRLYLVLDFINGGHLFFQLYKQGLFREELARIYTAEIVSAVAHLHDNGIMHRDLKPENILLDADGHAMLTDFGLAKEFNENTRSNSMCGTVEYMAPEIILGRGHDKAADWWSVGILLFEMLTGKPPFVGNRDKVQQKIVKEKLKLPSFLSSEAHSLLKGLLHKEGGKRLGSGPGGSDEIKRHKWLKPINWRKLEARQIQPSFRPNVSGLTCIANFDECWTSMPVLDSPVATPVAGGAGHSSFAGFTYVRPAPFLQDVKPPSSSRLKD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0680900 | RBH | 1.965120 | 0.858653 | 4.611570 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48290 | RBH | 1.184005 | 0.485825 | 1.104302 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0334000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027870 | RBH | 0.155973 | 14.944737 | 8.263435 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027900 | RBH | 0.190612 | 3.533161 | 3.173988 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027690 | RBH | 1.142307 | 9.494206 | 9.464854 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027490 | RBH | 0.280799 | 0.101910 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027780 | RBH | 1.709102 | 2.821157 | 13.669933 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0469600 | RBH | 8.597209 | 58.064304 | 69.024784 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028240 | RBH | 0.157834 | 0.490978 | 1.954557 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0482200 | SBH | 33.592236 | 76.9963265 | 32.9677495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027510 | RBH | 0.280577 | 0.403413 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027970 | RBH | 0.299744 | 3.092803 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027690 | RBH | 1.909468 | 12.975004 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028020 | RBH | 0.413644 | 1.283887 | 1.874092 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027580 | RBH | 0.316249 | 3.398549 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027650 | RBH | 0.238304 | 0.000000 | 2.887479 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027390 | RBH | 0.686525 | 16.968157 | 8.949423 |
