Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0674300 | OGI:07077700 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:28503062-28505494 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACAGCAAAATCTGATATATATTTCAGTAGCTACATTTGCTCTAAGAAGTCATAAATAATTTACAGAACAAGTACCAATACAATATTACTATGAAGCATTTCAGTTCTCATTTGATGCTGTTTTGCTAACTAATCTCGCGAGCGAAAAATAAGCAAATCACTAGCAATTTCTATAACAGTCCAAACACCTTTCTGGCCACTCTAGACAGCAGCTCTCTTTTCAAAGGCTGCTTATCTGGCTTCATAAGGCCTTCTTCCCTAGTCATACCCCTGTTGCCCATTGTGGTACCAGCGCCTGAATTATTCATTGGACATGCTTCTTCTTTGGCAGGTTCAATAATATTTGGTGGATCCTCACTAGCACATGGTGAGTAGTCAACCTCTTCTTCCTCACATTTGCTGCTATCGTCACGCACCACCGTCCCAAATTTGGATGTTTTAGATGGCAATGACGGCGTATGCTTCTCATCTCTATTTGAAATGAGGGTATCTACTGTGTCATCCGCAGAACTTGGATCCCCATCAGTAGCGGACATCTGGAGCTCCCCATCCTGTTTTTCATCGCTGTAGAGGTGCAATCTGTCAATAATCCTCCAAGTAACAGCATCCGGTGATATGCCATTCCTTCTCATCTCCTTCACTAACTGATAAACCAGCTTCTTCAATCCCTGCTTGCAGGCAGCATCGACGAGAATGTTGTAGCACAGGACACCAGGTGCAACCCCAGAGTCCACCAATTCATATAAGAAATCACATGCCTGTTCTAGTTTCCCTAGTTTACAGAGGCCTCTGAAGATCGCGCTGTACACATAATCATCATGCATTCCAGATGGCCAGATAACATTGTCCCAAAATGACTTTGCCTTCTCTAGTTCTCCAGCATCGCAGAACCCTTTGATCATTACCGTGTGAGTCACGGAGTCAGGAATGACGTTACTGGACTTCATTTCCTCAAGGGCCTCCATTGCTCTGTCAAGTAGCCCAAGGCTGAGCAGTCCCTTGAGGACACAATTGTAAGTGACAACATTAGGCAAGCACTGGTGCTTGGGCATCAGAGTGGACAGTACATGCAGGGCTTCTGCAAACTCACCTACACCCAGGTATCCGGATATGAGGGTGGTGAAGGTCACAACGTCTGGAGCACAGAATTTCCCATTCAGCATGTCATCTACAATCCTCCTGGCTTCCTGGGCCCTTCCAACTTTGCAGAAACCATGGATGACAGTGTTCATGGTGATCACATCGGGCTTGCATCCTTCCTGCAGCATGGACACTAGCACATCAAGCTGCTCACTTGGGTTGTCCACAACACGGAGTGCTGCAAGAAACATATTGTATATCCTAGTCCTGGTGTCATCATCAGGAGTAACCTTCAGCATCAGTTCCATGACATCCTTGGCCTTTGCGAGCTCATTCTCCAGGCAGAGCTCATCAACTAGTACCTTGTATGTTACCTCCCTTGGGTGATACCTGAAACGCACGCCTTCCATCACTAGCTGGTACGCCCTCAAGCGCCCCCCAGGCTTCTGGCTGGTGCACAACCCATGAACAATGCAATTGTAGGAGACGGTGCTTGGATACATGCCCCTCTTCCCCATGATGTACACTATCCTGGATGCACCATGGTGCTGCCCAGACCGGCAAAGGGAGTCAATCATCTGAGAGTAGGCAAACACGTCGGCAACACCGCACCGTTGCTGTGGCATCTCCTCGGCAATTCGGAAGACAATGTGGAAGAACCCCTCGATGCAGAGGCATTGCACGAGGTTGGCGAACGCGGCATTCTTCAGTTCCTGGTCTTCTCCGTTGCTGCGCTCCATGCTAGACCAGAGATGGTTGTCGACAAGGGCCATAGCCCCGTCGACGTCGCGGCTGCGGAGCAAGGCCTTGACGAGGTAACTGCGCGCGAGTGAGCTGGGAGCCACCCCGCGGCGTGGCATTTCGTCGAGCAGCTTCCGGACGGCGCGCGGGTCGGGGATGCGGGCGTAGCCGTCGAGGAGCGCGGCGTAGGTGGCCGCGTCCGGGGCGGCGCGCATGCGGAGGAGGAGGCGGTGGGCGAGGAGGACGAGGAGGAGCGGGGCCGAGGAGCCGCAGAGGAGGGCTAGGAGGCGGTTGTAGTTGGGGAGGGAGGGGACGAGCGCGGCGGGCGGCGCGGCCTGGAGGAGGCGGAGCGTGAGCAGCGGCTTGCGGGCGCGGAGGAGGCGGCGGAGCAGGCCATCGGCGGCGCGCCCGTCGAGGTGGCGGGACGGCACGGCGGCGGAGGAGGAGGAGAGGAAGAGGAGGGAGACGCGGTGGTGCGCCTCGGCGGCGCGGCCCGTGGCGCAGAGCTCGTCCACCAGGCTGCCCAGGTCCGGCCGCTCGCCCTGTGCCGCCGCCGCCGCCATCGCCGAGCCGGGCCGAACCAGTTGAGCACGCTCGATTCAACGTTTTCAT
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| CDS seq | ATGGCGGCGGCGGCGGCACAGGGCGAGCGGCCGGACCTGGGCAGCCTGGTGGACGAGCTCTGCGCCACGGGCCGCGCCGCCGAGGCGCACCACCGCGTCTCCCTCCTCTTCCTCTCCTCCTCCTCCGCCGCCGTGCCGTCCCGCCACCTCGACGGGCGCGCCGCCGATGGCCTGCTCCGCCGCCTCCTCCGCGCCCGCAAGCCGCTGCTCACGCTCCGCCTCCTCCAGGCCGCGCCGCCCGCCGCGCTCGTCCCCTCCCTCCCCAACTACAACCGCCTCCTAGCCCTCCTCTGCGGCTCCTCGGCCCCGCTCCTCCTCGTCCTCCTCGCCCACCGCCTCCTCCTCCGCATGCGCGCCGCCCCGGACGCGGCCACCTACGCCGCGCTCCTCGACGGCTACGCCCGCATCCCCGACCCGCGCGCCGTCCGGAAGCTGCTCGACGAAATGCCACGCCGCGGGGTGGCTCCCAGCTCACTCGCGCGCAGTTACCTCGTCAAGGCCTTGCTCCGCAGCCGCGACGTCGACGGGGCTATGGCCCTTGTCGACAACCATCTCTGGTCTAGCATGGAGCGCAGCAACGGAGAAGACCAGGAACTGAAGAATGCCGCGTTCGCCAACCTCGTGCAATGCCTCTGCATCGAGGGGTTCTTCCACATTGTCTTCCGAATTGCCGAGGAGATGCCACAGCAACGGTGCGGTGTTGCCGACGTGTTTGCCTACTCTCAGATGATTGACTCCCTTTGCCGGTCTGGGCAGCACCATGGTGCATCCAGGATAGTGTACATCATGGGGAAGAGGGGCATGTATCCAAGCACCGTCTCCTACAATTGCATTGTTCATGGGTTGTGCACCAGCCAGAAGCCTGGGGGGCGCTTGAGGGCGTACCAGCTAGTGATGGAAGGCGTGCGTTTCAGGTATCACCCAAGGGAGGTAACATACAAGGTACTAGTTGATGAGCTCTGCCTGGAGAATGAGCTCGCAAAGGCCAAGGATGTCATGGAACTGATGCTGAAGGTTACTCCTGATGATGACACCAGGACTAGGATATACAATATGTTTCTTGCAGCACTCCGTGTTGTGGACAACCCAAGTGAGCAGCTTGATGTGCTAGTGTCCATGCTGCAGGAAGGATGCAAGCCCGATGTGATCACCATGAACACTGTCATCCATGGTTTCTGCAAAGTTGGAAGGGCCCAGGAAGCCAGGAGGATTGTAGATGACATGCTGAATGGGAAATTCTGTGCTCCAGACGTTGTGACCTTCACCACCCTCATATCCGGATACCTGGGTGTAGGTGAGTTTGCAGAAGCCCTGCATGTACTGTCCACTCTGATGCCCAAGCACCAGTGCTTGCCTAATGTTGTCACTTACAATTGTGTCCTCAAGGGACTGCTCAGCCTTGGGCTACTTGACAGAGCAATGGAGGCCCTTGAGGAAATGAAGTCCAGTAACGTCATTCCTGACTCCGTGACTCACACGGTAATGATCAAAGGGTTCTGCGATGCTGGAGAACTAGAGAAGGCAAAGTCATTTTGGGACAATGTTATCTGGCCATCTGGAATGCATGATGATTATGTGTACAGCGCGATCTTCAGAGGCCTCTGTAAACTAGGGAAACTAGAACAGGCATGTGATTTCTTATATGAATTGGTGGACTCTGGGGTTGCACCTGGTGTCCTGTGCTACAACATTCTCGTCGATGCTGCCTGCAAGCAGGGATTGAAGAAGCTGGTTTATCAGTTAGTGAAGGAGATGAGAAGGAATGGCATATCACCGGATGCTGTTACTTGGAGGATTATTGACAGATTGCACCTCTACAGCGATGAAAAACAGGATGGGGAGCTCCAGATGTCCGCTACTGATGGGGATCCAAGTTCTGCGGATGACACAGTAGATACCCTCATTTCAAATAGAGATGAGAAGCATACGCCGTCATTGCCATCTAAAACATCCAAATTTGGGACGGTGGTGCGTGACGATAGCAGCAAATGTGAGGAAGAAGAGGTTGACTACTCACCATGTGCTAGTGAGGATCCACCAAATATTATTGAACCTGCCAAAGAAGAAGCATGTCCAATGAATAATTCAGGCGCTGGTACCACAATGGGCAACAGGGGTATGACTAGGGAAGAAGGCCTTATGAAGCCAGATAAGCAGCCTTTGAAAAGAGAGCTGCTGTCTAGAGTGGCCAGAAAGGTGTTTGGACTGTTATAG
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| Protein seq | MAAAAAQGERPDLGSLVDELCATGRAAEAHHRVSLLFLSSSSAAVPSRHLDGRAADGLLRRLLRARKPLLTLRLLQAAPPAALVPSLPNYNRLLALLCGSSAPLLLVLLAHRLLLRMRAAPDAATYAALLDGYARIPDPRAVRKLLDEMPRRGVAPSSLARSYLVKALLRSRDVDGAMALVDNHLWSSMERSNGEDQELKNAAFANLVQCLCIEGFFHIVFRIAEEMPQQRCGVADVFAYSQMIDSLCRSGQHHGASRIVYIMGKRGMYPSTVSYNCIVHGLCTSQKPGGRLRAYQLVMEGVRFRYHPREVTYKVLVDELCLENELAKAKDVMELMLKVTPDDDTRTRIYNMFLAALRVVDNPSEQLDVLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDMLNGKFCAPDVVTFTTLISGYLGVGEFAEALHVLSTLMPKHQCLPNVVTYNCVLKGLLSLGLLDRAMEALEEMKSSNVIPDSVTHTVMIKGFCDAGELEKAKSFWDNVIWPSGMHDDYVYSAIFRGLCKLGKLEQACDFLYELVDSGVAPGVLCYNILVDAACKQGLKKLVYQLVKEMRRNGISPDAVTWRIIDRLHLYSDEKQDGELQMSATDGDPSSADDTVDTLISNRDEKHTPSLPSKTSKFGTVVRDDSSKCEEEEVDYSPCASEDPPNIIEPAKEEACPMNNSGAGTTMGNRGMTREEGLMKPDKQPLKRELLSRVARKVFGLL |
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| Function | Pentatricopeptide repeat-containing protein At3g18020 [UniProtKB/Swiss-Prot:Q9LSK8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0674300 | Os07t0674300-01 | Chr07 | 28503062 | 28505494 | - | irgsp1_rep | ||
| CDS seq | ATGGCGGCGGCGGCGGCACAGGGCGAGCGGCCGGACCTGGGCAGCCTGGTGGACGAGCTCTGCGCCACGGGCCGCGCCGCCGAGGCGCACCACCGCGTCTCCCTCCTCTTCCTCTCCTCCTCCTCCGCCGCCGTGCCGTCCCGCCACCTCGACGGGCGCGCCGCCGATGGCCTGCTCCGCCGCCTCCTCCGCGCCCGCAAGCCGCTGCTCACGCTCCGCCTCCTCCAGGCCGCGCCGCCCGCCGCGCTCGTCCCCTCCCTCCCCAACTACAACCGCCTCCTAGCCCTCCTCTGCGGCTCCTCGGCCCCGCTCCTCCTCGTCCTCCTCGCCCACCGCCTCCTCCTCCGCATGCGCGCCGCCCCGGACGCGGCCACCTACGCCGCGCTCCTCGACGGCTACGCCCGCATCCCCGACCCGCGCGCCGTCCGGAAGCTGCTCGACGAAATGCCACGCCGCGGGGTGGCTCCCAGCTCACTCGCGCGCAGTTACCTCGTCAAGGCCTTGCTCCGCAGCCGCGACGTCGACGGGGCTATGGCCCTTGTCGACAACCATCTCTGGTCTAGCATGGAGCGCAGCAACGGAGAAGACCAGGAACTGAAGAATGCCGCGTTCGCCAACCTCGTGCAATGCCTCTGCATCGAGGGGTTCTTCCACATTGTCTTCCGAATTGCCGAGGAGATGCCACAGCAACGGTGCGGTGTTGCCGACGTGTTTGCCTACTCTCAGATGATTGACTCCCTTTGCCGGTCTGGGCAGCACCATGGTGCATCCAGGATAGTGTACATCATGGGGAAGAGGGGCATGTATCCAAGCACCGTCTCCTACAATTGCATTGTTCATGGGTTGTGCACCAGCCAGAAGCCTGGGGGGCGCTTGAGGGCGTACCAGCTAGTGATGGAAGGCGTGCGTTTCAGGTATCACCCAAGGGAGGTAACATACAAGGTACTAGTTGATGAGCTCTGCCTGGAGAATGAGCTCGCAAAGGCCAAGGATGTCATGGAACTGATGCTGAAGGTTACTCCTGATGATGACACCAGGACTAGGATATACAATATGTTTCTTGCAGCACTCCGTGTTGTGGACAACCCAAGTGAGCAGCTTGATGTGCTAGTGTCCATGCTGCAGGAAGGATGCAAGCCCGATGTGATCACCATGAACACTGTCATCCATGGTTTCTGCAAAGTTGGAAGGGCCCAGGAAGCCAGGAGGATTGTAGATGACATGCTGAATGGGAAATTCTGTGCTCCAGACGTTGTGACCTTCACCACCCTCATATCCGGATACCTGGGTGTAGGTGAGTTTGCAGAAGCCCTGCATGTACTGTCCACTCTGATGCCCAAGCACCAGTGCTTGCCTAATGTTGTCACTTACAATTGTGTCCTCAAGGGACTGCTCAGCCTTGGGCTACTTGACAGAGCAATGGAGGCCCTTGAGGAAATGAAGTCCAGTAACGTCATTCCTGACTCCGTGACTCACACGGTAATGATCAAAGGGTTCTGCGATGCTGGAGAACTAGAGAAGGCAAAGTCATTTTGGGACAATGTTATCTGGCCATCTGGAATGCATGATGATTATGTGTACAGCGCGATCTTCAGAGGCCTCTGTAAACTAGGGAAACTAGAACAGGCATGTGATTTCTTATATGAATTGGTGGACTCTGGGGTTGCACCTGGTGTCCTGTGCTACAACATTCTCGTCGATGCTGCCTGCAAGCAGGGATTGAAGAAGCTGGTTTATCAGTTAGTGAAGGAGATGAGAAGGAATGGCATATCACCGGATGCTGTTACTTGGAGGATTATTGACAGATTGCACCTCTACAGCGATGAAAAACAGGATGGGGAGCTCCAGATGTCCGCTACTGATGGGGATCCAAGTTCTGCGGATGACACAGTAGATACCCTCATTTCAAATAGAGATGAGAAGCATACGCCGTCATTGCCATCTAAAACATCCAAATTTGGGACGGTGGTGCGTGACGATAGCAGCAAATGTGAGGAAGAAGAGGTTGACTACTCACCATGTGCTAGTGAGGATCCACCAAATATTATTGAACCTGCCAAAGAAGAAGCATGTCCAATGAATAATTCAGGCGCTGGTACCACAATGGGCAACAGGGGTATGACTAGGGAAGAAGGCCTTATGAAGCCAGATAAGCAGCCTTTGAAAAGAGAGCTGCTGTCTAGAGTGGCCAGAAAGGTGTTTGGACTGTTATAG
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| Protein seq | MAAAAAQGERPDLGSLVDELCATGRAAEAHHRVSLLFLSSSSAAVPSRHLDGRAADGLLRRLLRARKPLLTLRLLQAAPPAALVPSLPNYNRLLALLCGSSAPLLLVLLAHRLLLRMRAAPDAATYAALLDGYARIPDPRAVRKLLDEMPRRGVAPSSLARSYLVKALLRSRDVDGAMALVDNHLWSSMERSNGEDQELKNAAFANLVQCLCIEGFFHIVFRIAEEMPQQRCGVADVFAYSQMIDSLCRSGQHHGASRIVYIMGKRGMYPSTVSYNCIVHGLCTSQKPGGRLRAYQLVMEGVRFRYHPREVTYKVLVDELCLENELAKAKDVMELMLKVTPDDDTRTRIYNMFLAALRVVDNPSEQLDVLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDMLNGKFCAPDVVTFTTLISGYLGVGEFAEALHVLSTLMPKHQCLPNVVTYNCVLKGLLSLGLLDRAMEALEEMKSSNVIPDSVTHTVMIKGFCDAGELEKAKSFWDNVIWPSGMHDDYVYSAIFRGLCKLGKLEQACDFLYELVDSGVAPGVLCYNILVDAACKQGLKKLVYQLVKEMRRNGISPDAVTWRIIDRLHLYSDEKQDGELQMSATDGDPSSADDTVDTLISNRDEKHTPSLPSKTSKFGTVVRDDSSKCEEEEVDYSPCASEDPPNIIEPAKEEACPMNNSGAGTTMGNRGMTREEGLMKPDKQPLKRELLSRVARKVFGLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0674300 | RBH | 0.401387 | 0.411632 | 0.489707 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47720 | RBH | 0.271105 | 0.276516 | 0.125905 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0336000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027490 | RBH | 0.157265 | 1.086148 | 0.262503 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027520 | RBH | 0.0 | 0.0 | 0.263232 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027340 | RBH | 0.174315 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027080 | RBH | 0.0 | 0.012207 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027350 | RBH | 0.433293 | 0.0 | 0.936057 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0462500 | RBH | 0.6530915 | 1.792874 | 0.81363 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027850 | RBH | 0.040048 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0476300 | RBH | 0.530286 | 1.386478 | 3.4958105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027130 | RBH | 0.034290 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027600 | RBH | 0.0 | 0.050174 | 0.092281 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027160 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027270 | RBH | 0.0 | 0.666797 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027030 | RBH | 0.196708 | 1.636196 | 0.0 |
