Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0668600 | OGI:07076940 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:28233249-28234681 | ||||||||
| Gene Symbol | OsGZF1 | ||||||||||
| DNA seq | AATATTTGTAAAGAAAATGATACCACTTGATATATAGGCTCGGAGCTAGCCCGACGACAATATCATAAATATTTTTATATATGCATGCACACGCATACACTTTTCTAGTAAAAATTGGCATAAATATGATACATGATCCAGCACCATATGTATAGGGTGTCAACTTTTAAAGCATCCCAAATCGCTCAAGTTTCTCCATTTTGGCAATTTGCGAGCTTGTGTCATCTCCTTCAAATGCATCGCAAAAGAGTATGTAACACACCCATCTACACGAAGAACAAACAAAAAGATTCAACATATACACATGCATAAATACAAACACTTCATTGATGGTTGATTAATTAATTTACCTATTCATCCACCAAGTCCATGATGAGATCATAATGTGGGTAGCCATTGAGCAAAGCGTCTTCCTCCTCCACACAACGGCGGCAACCACACCTTTTTCCAGTTGAACCCTCACCATTTGCCAATGTTGACACCGGTATGGTGGTGGTAGCAACAGCGGTAGCAGAAGAAGAACCAACATTAGCATTAGCATTAGCATTAGAATACAAGCGAAGCCTATTTCTCATGGCCTCTTCGATTAGATCAAGCTGATCACGCATAGCAGAAACCCTGGGATGATGATCAGCATCAGGAGTCCGCATCGGTATCGACATCGGCATCGGCATTGGCATCGGTGTGAGGATGGCTGACGCAATGGAGTTGGGATCGTCCCTAAGCTCGGCGGCGGAGTGGGCAAAGAAGCAGATCCGGCGAGGGCACCGCGTGCCGGCGGAGCACATGCGCGTGCGGAAGCGGGACGGGTGCAGCCATAGCTCGAAGACACCATGGGCGTAGCGGCAACGGAGGCCGTGGGCGCAGCTGGGCACGGCGCCCGGCGCCGCCTCGCGCGGGCGGTAGTCCGGGCACGACACGGCGGCGTACGCGAAGCGCCGCGTGTCGCGCCGCCGCGCGCGCTCGCCCTTGTGCGCGTAGGGGCACGACGTCCAGTCGTGGCTGGACGACCGCGGGCACCGCTGCACCTTGTAGACGTGTATCCAGAAATCCTCCGACATGGATGCCCAGAGACGGTGGCCACGATGAGCCCATGCGCCCCACTTGGTCGGGTCAATGGTTACTTCTTCTTCTTCATGGCCGATGATGCTCGTCGTCTGTGCAAAAACATCATGCATATGATGCATAGCCATGGCCACAAAAAAATGTATATATGCAAGCTAAGCCTGTGTTTGCAATGTGCTTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAATGCTAGGCTAGATGCATGTTAGAAACTAAACATTAATTGGTATGAATGTTGTGCATATATAGGGCTATATGTCCTAATGCATGATGAAGGATGTGAG
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| CDS seq | ATGGCTATGCATCATATGCATGATGTTTTTGCACAGACGACGAGCATCATCGGCCATGAAGAAGAAGAAGTAACCATTGACCCGACCAAGTGGGGCGCATGGGCTCATCGTGGCCACCGTCTCTGGGCATCCATGTCGGAGGATTTCTGGATACACGTCTACAAGGTGCAGCGGTGCCCGCGGTCGTCCAGCCACGACTGGACGTCGTGCCCCTACGCGCACAAGGGCGAGCGCGCGCGGCGGCGCGACACGCGGCGCTTCGCGTACGCCGCCGTGTCGTGCCCGGACTACCGCCCGCGCGAGGCGGCGCCGGGCGCCGTGCCCAGCTGCGCCCACGGCCTCCGTTGCCGCTACGCCCATGGTGTCTTCGAGCTATGGCTGCACCCGTCCCGCTTCCGCACGCGCATGTGCTCCGCCGGCACGCGGTGCCCTCGCCGGATCTGCTTCTTTGCCCACTCCGCCGCCGAGCTTAGGGACGATCCCAACTCCATTGCGTCAGCCATCCTCACACCGATGCCAATGCCGATGCCGATGTCGATACCGATGCGGACTCCTGATGCTGATCATCATCCCAGGGTTTCTGCTATGCGTGATCAGCTTGATCTAATCGAAGAGGCCATGAGAAATAGGCTTCGCTTGTATTCTAATGCTAATGCTAATGCTAATGTTGGTTCTTCTTCTGCTACCGCTGTTGCTACCACCACCATACCGGTGTCAACATTGGCAAATGGTGAGGGTTCAACTGGAAAAAGGTGTGGTTGCCGCCGTTGTGTGGAGGAGGAAGACGCTTTGCTCAATGGCTACCCACATTATGATCTCATCATGGACTTGGTGGATGAATAG
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| Protein seq | MAMHHMHDVFAQTTSIIGHEEEEVTIDPTKWGAWAHRGHRLWASMSEDFWIHVYKVQRCPRSSSHDWTSCPYAHKGERARRRDTRRFAYAAVSCPDYRPREAAPGAVPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAILTPMPMPMPMSIPMRTPDADHHPRVSAMRDQLDLIEEAMRNRLRLYSNANANANVGSSSATAVATTTIPVSTLANGEGSTGKRCGCRRCVEEEDALLNGYPHYDLIMDLVDE |
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| Function | Zinc finger CCCH domain-containing protein 24 [UniProtKB/Swiss-Prot:Q10EL1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0668600 | Os07t0668600-01 | Chr07 | 28233256 | 28234565 | - | irgsp1_rep | ||
| CDS seq | ATGGCTATGCATCATATGCATGATGTTTTTGCACAGACGACGAGCATCATCGGCCATGAAGAAGAAGAAGTAACCATTGACCCGACCAAGTGGGGCGCATGGGCTCATCGTGGCCACCGTCTCTGGGCATCCATGTCGGAGGATTTCTGGATACACGTCTACAAGGTGCAGCGGTGCCCGCGGTCGTCCAGCCACGACTGGACGTCGTGCCCCTACGCGCACAAGGGCGAGCGCGCGCGGCGGCGCGACACGCGGCGCTTCGCGTACGCCGCCGTGTCGTGCCCGGACTACCGCCCGCGCGAGGCGGCGCCGGGCGCCGTGCCCAGCTGCGCCCACGGCCTCCGTTGCCGCTACGCCCATGGTGTCTTCGAGCTATGGCTGCACCCGTCCCGCTTCCGCACGCGCATGTGCTCCGCCGGCACGCGGTGCCCTCGCCGGATCTGCTTCTTTGCCCACTCCGCCGCCGAGCTTAGGGACGATCCCAACTCCATTGCGTCAGCCATCCTCACACCGATGCCAATGCCGATGCCGATGTCGATACCGATGCGGACTCCTGATGCTGATCATCATCCCAGGGTTTCTGCTATGCGTGATCAGCTTGATCTAATCGAAGAGGCCATGAGAAATAGGCTTCGCTTGTATTCTAATGCTAATGCTAATGCTAATGTTGGTTCTTCTTCTGCTACCGCTGTTGCTACCACCACCATACCGGTGTCAACATTGGCAAATGGTGAGGGTTCAACTGGAAAAAGGTGTGGTTGCCGCCGTTGTGTGGAGGAGGAAGACGCTTTGCTCAATGGCTACCCACATTATGATCTCATCATGGACTTGGTGGATGAATAG
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| Protein seq | MAMHHMHDVFAQTTSIIGHEEEEVTIDPTKWGAWAHRGHRLWASMSEDFWIHVYKVQRCPRSSSHDWTSCPYAHKGERARRRDTRRFAYAAVSCPDYRPREAAPGAVPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAILTPMPMPMPMSIPMRTPDADHHPRVSAMRDQLDLIEEAMRNRLRLYSNANANANVGSSSATAVATTTIPVSTLANGEGSTGKRCGCRRCVEEEDALLNGYPHYDLIMDLVDE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0668600 | Os07t0668600-02 | Chr07 | 28233249 | 28234681 | - | irgsp1_rep | ||
| CDS seq | ATGGCTATGCATCATATGCATGATGTTTTTGCACAGACGACGAGCATCATCGGCCATGAAGAAGAAGAAGTAACCATTGACCCGACCAAGTGGGGCGCATGGGCTCATCGTGGCCACCGTCTCTGGGCATCCATGTCGGAGGATTTCTGGATACACGTCTACAAGGTGCAGCGGTGCCCGCGGTCGTCCAGCCACGACTGGACGTCGTGCCCCTACGCGCACAAGGGCGAGCGCGCGCGGCGGCGCGACACGCGGCGCTTCGCGTACGCCGCCGTGTCGTGCCCGGACTACCGCCCGCGCGAGGCGGCGCCGGGCGCCGTGCCCAGCTGCGCCCACGGCCTCCGTTGCCGCTACGCCCATGGTGTCTTCGAGCTATGGCTGCACCCGTCCCGCTTCCGCACGCGCATGTGCTCCGCCGGCACGCGGTGCCCTCGCCGGATCTGCTTCTTTGCCCACTCCGCCGCCGAGCTTAGGGACGATCCCAACTCCATTGCGTCAGCCATCCTCACACCGATGCCAATGCCGATGCCGATGTCGATACCGATGCGGACTCCTGATGCTGATCATCATCCCAGGGTTTCTGCTATGCGTGATCAGCTTGATCTAATCGAAGAGGCCATGAGAAATAGGCTTCGCTTGTATTCTAATGCTAATGCTAATGCTAATGTTGGTTCTTCTTCTGCTACCGCTGTTGCTACCACCACCATACCGGTGTCAACATTGGCAAATGGTGAGGGTTCAACTGGAAAAAGGTGTGGTTGCCGCCGTTGTGTGGAGGAGGAAGACGCTTTGCTCAATGGCTACCCACATTATGATCTCATCATGGACTTGGTGGATGAATAG
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| Protein seq | MAMHHMHDVFAQTTSIIGHEEEEVTIDPTKWGAWAHRGHRLWASMSEDFWIHVYKVQRCPRSSSHDWTSCPYAHKGERARRRDTRRFAYAAVSCPDYRPREAAPGAVPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAILTPMPMPMPMSIPMRTPDADHHPRVSAMRDQLDLIEEAMRNRLRLYSNANANANVGSSSATAVATTTIPVSTLANGEGSTGKRCGCRRCVEEEDALLNGYPHYDLIMDLVDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0668600 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47240 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0020020 | SBH | 0.527224 | 12.269720 | 6.379474 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0019900 | SBH | 1.613139 | 10.018869 | 7.315614 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0019840 | SBH | 9.300345 | 16.610228 | 15.906534 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0457800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0471200 | RBH | 0 | 0.107615 | 0.007999 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0019740 | SBH | 0.981636 | 10.584256 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0019860 | SBH | 0.914169 | 1.850220 | 2.268880 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
