Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0654300 | OGI:07060390 | 7/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:27486411-27487921 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTGACATGATCCCATTTTGTTTATTTGCTGGGAAAGGCTGAAGGAGGCCATCTGAGTATATTAAGTTACAAAGAAAATACGACATAAACTGTCGACGACGGATGTGCGCGAGGCACCTCCAGGAACCACACGCTAACCACACAAGCACAAACCACTGAAAATGGAACCGAGCACCAAAACGACCACCGCTAAGCGTGGCCGATCGCCGCTCGGCCTACAACAAGTCAACAACACCACAAAGGCGAGAGTCCAAAAACGATACCAAAAACGATACCCCCATGGAGGTCACGACATCAAGGACGCCGCCATCGCCAATCTAAGAAAGATGCCGTTTTCACCCAGAGAGAACTTGCAAGGAAAGGGGGAGAGGTACCCACGACAGCGCCCCAAGAGGGCTACGACACCCAAAGGCGTAGCCGCTGCCGGTCCGGTGATCACCGAGCGAGGCTTACGCCTGGAACCCCTGCAACCTTTCAAGTAGTTTGTCACCCATCAACTCAGTAACCACCACACAGGCATTGGCAGCGCGTGGCTTCCACCAAAACCGCACCGGCGCCCCTCTGCCAGCCTACTTCCGAACTTGCCGCCGAACCCTGCAGCCAGCTCACTGCATTCCACCGCTCCTCCCCTGAGAGCTGGCCTAGGCCACCTCCGTCCCACCACCCGCCGACCTCCTTGCCATGTTCGGCCAAAGGAGAACCCGGGACTAGACAACATCACTTCAGCCACCTGAGCTTCCCCCGCTGACCAGCAGCCACCCCAACCCAACCGAAACTCCCCACAAAGAAGGGGAGGAGCTCAAGAAGGGAGAGGGTGCTGACCGGCAACGAGGAAGACGACCCATCACCGCCAGCTCCCTTTGCACCGCCGCTTCTCCCATGAGCACCGACACCGGACCTGCAACGCCAAATCTAGCTGACGCCCGAGGTCTCCAGCGCTACCACCGTCAGGCGTCCCAGTCGGCAGCGGTAGCCACGACCTGCTCGAGGTGCGTTGCCGCTGATGCCACCGGCTGCGGCAGCCTCGGGGCGTCCCGCCACCGGCCATGGCGGCCGCGAGCTGCTGCCCCGCGGTCTGCTCTGGCCAGATCCACCTTCCGCGGTGTCCGCGCCGACGCCACCCCCGCCGTCCAGCTTCCTGGCCGCCGCGATGGCGCCGACGCCAGCGAAACCACCTCCACAGACGCTCTGCCGCCAAGCCCTCATGGCCGTGCCGTCCCCGGGCCGCCGTGCCATCGCCATCATGTCATCGCGCCGCCGCAGTGGCCGGACCCGTACCGGCCAGATCTGACCTCAGAGGCGCGGGATCCGCCGCCTCCCCACACCGCCCCGCCATCTCCACCTCCGGCCACTGAGGTCGCTGTCGTCGGCTACGCCCCATCCTCCCTACGCTGAGTTGGGGGCCTCCGAGCTTGAATGGCCTCACCGCCGCCTTTCCGGCTCGCCACCGGCGGCTAGGGTTTTTGCCCCCCGAGCCGCCGGCACGAGAGCAACGCGGGGGTCTCGTTCTGC
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| CDS seq | GCTCCTCCCCTTCTTTGTGGGGAGTTTCGGTTGGGTTGGGGTGGCTGCTGGTCAGCGGGGGAAGCTCAGGTGGCTGAAGTGATGTTGTCTAGTCCCGGGTTCTCCTTTGGCCGAACATGGCAAGGAGGTCGGCGGGTGGTGGGACGGAGGTGGCCTAGGCCAGCTCTCAGGGGAGGAGCGGTGGAATGCAGTGAGCTGGCTGCAGGGTTCGGCGGCAAGTTCGGAAGTAGGCTGGCAGAGGGGCGCCGGTGCGGTTTTGGTGGAAGCCACGCGCTGCCAATGCCTGTGTGGTGGTTACTGAGTTGA |
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| Protein seq | APPLLCGEFRLGWGGCWSAGEAQVAEVMLSSPGFSFGRTWQGGRRVVGRRWPRPALRGGAVECSELAAGFGGKFGSRLAEGRRCGFGGSHALPMPVWWLLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0654300 | Os07t0654300-01 | Chr07 | 27486411 | 27487921 | - | irgsp1_rep | ||
| CDS seq | GCTCCTCCCCTTCTTTGTGGGGAGTTTCGGTTGGGTTGGGGTGGCTGCTGGTCAGCGGGGGAAGCTCAGGTGGCTGAAGTGATGTTGTCTAGTCCCGGGTTCTCCTTTGGCCGAACATGGCAAGGAGGTCGGCGGGTGGTGGGACGGAGGTGGCCTAGGCCAGCTCTCAGGGGAGGAGCGGTGGAATGCAGTGAGCTGGCTGCAGGGTTCGGCGGCAAGTTCGGAAGTAGGCTGGCAGAGGGGCGCCGGTGCGGTTTTGGTGGAAGCCACGCGCTGCCAATGCCTGTGTGGTGGTTACTGAGTTGA
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| Protein seq | APPLLCGEFRLGWGGCWSAGEAQVAEVMLSSPGFSFGRTWQGGRRVVGRRWPRPALRGGAVECSELAAGFGGKFGSRLAEGRRCGFGGSHALPMPVWWLLS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0654300 | RBH | 0.358467 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45790 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025990 | RBH | 0.000000 | 0.000000 | 2.333361 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026030 | RBH | 0.0 | 1.994130 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025880 | RBH | 0.000000 | 0.000000 | 1.822108 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023370 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0417900 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0023890 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0428400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023150 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026010 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023190 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026080 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025550 | RBH | 0.000000 | 0.0 | 0.306926 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
