Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0646800 | OGI:07075060 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:27006623-27008473 | ||||||||
| Gene Symbol | GATL4, OsSTA200, OsGATL4 | ||||||||||
| DNA seq | ACGGCTATACCAACTTTATCCTCGCCCCCTCCCCACCACCCCTCTCTCCCCTCCCCTCTCAAACACCACCGCCACCGCCATGGTCACGCCCTTCCCCTCCTCCTAGCACCACCTCTCCCCTTCCCGCGCTACGCGGGACGAGGACCAGGGATGGCTCCCCCCACCGCCGTCTCCGCCTCCACCGCCGGCCTGATCTGGTCCTTGTCGCCCTCGCTCTCGCTCGTCGTCACCACCTCGGTGGCGCTTCTGCTCGTGCTCGGCGGTGTGTCCGGGATCCGCGTCAACGTCATCCGGCTCCCGTCGGCGTCGCCGTTCCCGGCGTTCCGGGAGGCGCCGGCGTTCAGGAATGGCGACGGGTGCCCGCCGGCGAGGGGGTCGGCGGCGGCGGAGGGGGGGCGGGTGGACGTGGCCATGACGCTCGACGCCAACTACCTGAGGGGCACCATGGCCGCCGTGTTCTCCATCCTGCAGCACACGGCGTGCCCGGAGAGCGTCGCGTTCCACTTCCTCGCCGCGCGCTCCGACCCGGACGCCGGCGACCTCGCCGCCGCCATCCGCGCCACCTTCCCCTACCTCGGCGCCGCCGTCAGCGTCTACCGCTTCGACCCGTCGCGCGTCCGCGGCCGCATCTCCCGCTCGGTGCGCCGCGCGCTCGACCAGCCGCTCAACTACGCGCGCGTCTACCTCGCCGACACGCTCCCCGCCGGCGTGCGCCGCGTCCTCTACCTCGACTCCGACGTCGTCGTCGTCGACGACGTGCGGAAGCTCTGGTCGGTGGACCTCGCCGGGCACGTGGTGGCGGCGCCGGAGTACTGCCACGCCAACTTCACCAAGTACTTCACCGACGCGTTCTGGTCGGACGGCGAGCTCAGCGGCGCCGCGTTCCGACGCGGCCGCCGCCGGCCGCCGTGCTACTTCAACACCGGCGTGATGGTGATGGACATGGGGCGGTGGCGCGACGGCGGGTACACGCGGCGGGTGGAGGAGTGGATGGCGGTGCAGAAGCGGAGGCGGATCTACCACCTCGGCTCGCTGCCGCCGTTCCTGCTGGTGCTCGCCGGCGACATCAAGGCGGTGGATCACCGGTGGAACCAGCACGGGCTCGGCGGCGACAACGCGGAGGGGAAATGCCGGAGCCTGCACCCGGGCCCGGTCAGCCTCCTCCATTGGAGTGGCAAGGGGAAGCCATGGCTGCGCCTCGACTCGCGGAAGCCCTGCGCCGTCGACTACCTCTGGGCGCCGTACGACCTCTACAAGGCCGCCGTACCCGCGCTCGAGGAGTGAGCTAGCTAGCTAGCTCGCCGCCGGCGAGCCGAGGCGGCGGCGTGATTGCATTGCATGCATTCGAGGGCAGACATACGAGAGAAGAGGAGAGAGGGAGAGGGAGAGGAGGTGTGTACACGTACGTACGCACGTGCGTGCGTGCATGCATGCATGCATGTGTCCATACGTGCAAAACACAAAAGGGGCAAAAAAAAAAAAAGTTGTGACGTCATGCAAAACGGCACAAATAAGATTAATTAGGACTGGAAGTGGTGAAGAAATACATGCCAAGAGGATCAATGGAAGGAAGGCGCTCCGTCTCGTAGAAAAACTAATCCTAATTACGAATCTAAATACATATGTATCTAGGTTTATAACTAGGATTGACTTTTTTTTACAGAGTAGTACATATGTGGATGCATGTGCCGATCTCTTTTTCTTTCTTCCTCTTGTTTTGGGTTCCTTGAAAAATTTTCTACCGTTGAATTTGATTCATCATGGTGACGATGATGTACATAGGTGTTTTGATTGGAGTACGATGTGTAAAAAATTAGGGTGGTGAGATCAGAAGTGGGTGGTGCACTTTGC
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| CDS seq | ATGGCTCCCCCCACCGCCGTCTCCGCCTCCACCGCCGGCCTGATCTGGTCCTTGTCGCCCTCGCTCTCGCTCGTCGTCACCACCTCGGTGGCGCTTCTGCTCGTGCTCGGCGGTGTGTCCGGGATCCGCGTCAACGTCATCCGGCTCCCGTCGGCGTCGCCGTTCCCGGCGTTCCGGGAGGCGCCGGCGTTCAGGAATGGCGACGGGTGCCCGCCGGCGAGGGGGTCGGCGGCGGCGGAGGGGGGGCGGGTGGACGTGGCCATGACGCTCGACGCCAACTACCTGAGGGGCACCATGGCCGCCGTGTTCTCCATCCTGCAGCACACGGCGTGCCCGGAGAGCGTCGCGTTCCACTTCCTCGCCGCGCGCTCCGACCCGGACGCCGGCGACCTCGCCGCCGCCATCCGCGCCACCTTCCCCTACCTCGGCGCCGCCGTCAGCGTCTACCGCTTCGACCCGTCGCGCGTCCGCGGCCGCATCTCCCGCTCGGTGCGCCGCGCGCTCGACCAGCCGCTCAACTACGCGCGCGTCTACCTCGCCGACACGCTCCCCGCCGGCGTGCGCCGCGTCCTCTACCTCGACTCCGACGTCGTCGTCGTCGACGACGTGCGGAAGCTCTGGTCGGTGGACCTCGCCGGGCACGTGGTGGCGGCGCCGGAGTACTGCCACGCCAACTTCACCAAGTACTTCACCGACGCGTTCTGGTCGGACGGCGAGCTCAGCGGCGCCGCGTTCCGACGCGGCCGCCGCCGGCCGCCGTGCTACTTCAACACCGGCGTGATGGTGATGGACATGGGGCGGTGGCGCGACGGCGGGTACACGCGGCGGGTGGAGGAGTGGATGGCGGTGCAGAAGCGGAGGCGGATCTACCACCTCGGCTCGCTGCCGCCGTTCCTGCTGGTGCTCGCCGGCGACATCAAGGCGGTGGATCACCGGTGGAACCAGCACGGGCTCGGCGGCGACAACGCGGAGGGGAAATGCCGGAGCCTGCACCCGGGCCCGGTCAGCCTCCTCCATTGGAGTGGCAAGGGGAAGCCATGGCTGCGCCTCGACTCGCGGAAGCCCTGCGCCGTCGACTACCTCTGGGCGCCGTACGACCTCTACAAGGCCGCCGTACCCGCGCTCGAGGAGTGA
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| Protein seq | MAPPTAVSASTAGLIWSLSPSLSLVVTTSVALLLVLGGVSGIRVNVIRLPSASPFPAFREAPAFRNGDGCPPARGSAAAEGGRVDVAMTLDANYLRGTMAAVFSILQHTACPESVAFHFLAARSDPDAGDLAAAIRATFPYLGAAVSVYRFDPSRVRGRISRSVRRALDQPLNYARVYLADTLPAGVRRVLYLDSDVVVVDDVRKLWSVDLAGHVVAAPEYCHANFTKYFTDAFWSDGELSGAAFRRGRRRPPCYFNTGVMVMDMGRWRDGGYTRRVEEWMAVQKRRRIYHLGSLPPFLLVLAGDIKAVDHRWNQHGLGGDNAEGKCRSLHPGPVSLLHWSGKGKPWLRLDSRKPCAVDYLWAPYDLYKAAVPALEE |
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| Function | Probable galacturonosyltransferase-like 4 [UniProtKB/Swiss-Prot:Q9M8J2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0646800 | Os07t0646800-01 | Chr07 | 27006623 | 27008473 | + | irgsp1_rep | ||
| CDS seq | ATGGCTCCCCCCACCGCCGTCTCCGCCTCCACCGCCGGCCTGATCTGGTCCTTGTCGCCCTCGCTCTCGCTCGTCGTCACCACCTCGGTGGCGCTTCTGCTCGTGCTCGGCGGTGTGTCCGGGATCCGCGTCAACGTCATCCGGCTCCCGTCGGCGTCGCCGTTCCCGGCGTTCCGGGAGGCGCCGGCGTTCAGGAATGGCGACGGGTGCCCGCCGGCGAGGGGGTCGGCGGCGGCGGAGGGGGGGCGGGTGGACGTGGCCATGACGCTCGACGCCAACTACCTGAGGGGCACCATGGCCGCCGTGTTCTCCATCCTGCAGCACACGGCGTGCCCGGAGAGCGTCGCGTTCCACTTCCTCGCCGCGCGCTCCGACCCGGACGCCGGCGACCTCGCCGCCGCCATCCGCGCCACCTTCCCCTACCTCGGCGCCGCCGTCAGCGTCTACCGCTTCGACCCGTCGCGCGTCCGCGGCCGCATCTCCCGCTCGGTGCGCCGCGCGCTCGACCAGCCGCTCAACTACGCGCGCGTCTACCTCGCCGACACGCTCCCCGCCGGCGTGCGCCGCGTCCTCTACCTCGACTCCGACGTCGTCGTCGTCGACGACGTGCGGAAGCTCTGGTCGGTGGACCTCGCCGGGCACGTGGTGGCGGCGCCGGAGTACTGCCACGCCAACTTCACCAAGTACTTCACCGACGCGTTCTGGTCGGACGGCGAGCTCAGCGGCGCCGCGTTCCGACGCGGCCGCCGCCGGCCGCCGTGCTACTTCAACACCGGCGTGATGGTGATGGACATGGGGCGGTGGCGCGACGGCGGGTACACGCGGCGGGTGGAGGAGTGGATGGCGGTGCAGAAGCGGAGGCGGATCTACCACCTCGGCTCGCTGCCGCCGTTCCTGCTGGTGCTCGCCGGCGACATCAAGGCGGTGGATCACCGGTGGAACCAGCACGGGCTCGGCGGCGACAACGCGGAGGGGAAATGCCGGAGCCTGCACCCGGGCCCGGTCAGCCTCCTCCATTGGAGTGGCAAGGGGAAGCCATGGCTGCGCCTCGACTCGCGGAAGCCCTGCGCCGTCGACTACCTCTGGGCGCCGTACGACCTCTACAAGGCCGCCGTACCCGCGCTCGAGGAGTGA
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| Protein seq | MAPPTAVSASTAGLIWSLSPSLSLVVTTSVALLLVLGGVSGIRVNVIRLPSASPFPAFREAPAFRNGDGCPPARGSAAAEGGRVDVAMTLDANYLRGTMAAVFSILQHTACPESVAFHFLAARSDPDAGDLAAAIRATFPYLGAAVSVYRFDPSRVRGRISRSVRRALDQPLNYARVYLADTLPAGVRRVLYLDSDVVVVDDVRKLWSVDLAGHVVAAPEYCHANFTKYFTDAFWSDGELSGAAFRRGRRRPPCYFNTGVMVMDMGRWRDGGYTRRVEEWMAVQKRRRIYHLGSLPPFLLVLAGDIKAVDHRWNQHGLGGDNAEGKCRSLHPGPVSLLHWSGKGKPWLRLDSRKPCAVDYLWAPYDLYKAAVPALEE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0646800 | RBH | 0.0 | 0.0 | 4.897543 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45260 | RBH | 0.0 | 0.0 | 1.276480 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0359600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025470 | RBH | 0.0 | 0.0 | 1.074347 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025510 | RBH | 0.0 | 1.759567 | 1.385663 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025370 | RBH | 0.0 | 0.0 | 2.240710 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025380 | RBH | 0.0 | 0.107492 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025600 | RBH | 0.0 | 10.513374 | 1.055255 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0444700 | RBH | 0.1975755 | 2.384769 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026050 | RBH | 0.0 | 0.524407 | 1.404369 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0456400 | RBH | 0.079374 | 0.127818 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025380 | RBH | 0.0 | 0.015465 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025380 | RBH | 0.000000 | 4.746244 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025610 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025280 | RBH | 0.0 | 4.539704 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025250 | RBH | 0.0 | 1.246439 | 0.332251 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025310 | RBH | 0.0 | 2.135629 | 4.588715 |
