Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0642100 | OGI:07074070 | 2/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:26719124-26727238 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATAATAATTAAGAGTTATAGGATTCCAACCATAAGTGCTTGGTCATAGTCTGGATTGCAGTTTCATGTAAAGCAAAAGGATTCTACGAAGCAAACGCCATATATATGACAGCAGCTATTTACATTAGTGGCCATAATGCAGAGGTTCTAAACAAATGGCGTTGCTTCTAAGGGTGGGTGTGCATACTGGTGACATCCTGGACATATAACCAAAAGGGACAGTAATGTGCTGCATGTTGTTTCCTTCTTCATCCGCTAGATAAAGAGCAAAGAAAAGTATGGATTAGCAAATATGTATTGAGCTATGTGTCCTATGATATATAGAATTGAGATGATTGTTTATGTACTGACCTTTTCTTATGTTTCTGCTGACTGTCATCTTTAAATAGTTTCTTAGCAGCTGAGGCTGAGGCTGAGGCTGCAGGCCTGTTTTTGTTCAGGATACAGTTAGATTATATTTTTGCTAGAATAGAAAGTTGTTGTAACTGAGGAATGATGGAAAAATATACCTTTTTGGGGGAATGTTTTTGGTAGGCGGTGATGGGGATGCTGATGGAGTATCTTCTGCTGCTATTGCTAGTGCCTTTGCCTTGTAGGATAGTTTATGTTGTCAGTGTTTATAGTTTTTGCTGAAAGCAGGGATAAGTATTAATTACCTTGTCCTGAGTAGCAGAAGATAGCTCAACAGACGATGCAATCTGCGGAGGTTCTCCCTTAATTTTTGTCTCAGTTGTTGCCTGACCATTGAAAGAAAATGCAAAGTTATATTACTTGTGATGCAGTGATAAAAATAGTTATTGTGTAAGTAGCGATGTTAGAATAGAAACCTTAGGATCATGTGAGAATGAGATCTGTTTATCTTGAGCTGGCTTGGGAGAGACTGATAGGACATAGCTTTTCTTGCTTGGTGCTGGTGCATTAGCTTTGCTAGTTGGTGTCTGATCTGAAGCAGAACTGATAGTATACCTTGTTGGTGTCGATGGACTATCCATTGGTAACATACTTTCTGTCGTTTGTGCTTCTATCTTTGATCCTGTACTGCCTTCACTTGTTGCTGGTGCTAGTTGGAGAGAGCTGCTTGAGTCTGCTGGCATAATAGCTAATGTCTGTTGTGAACTGCTTGGTGAGATAGGCAGTAGGCCCTGCACTTCAGCATTGGATGAGATAATGTTGTTAACCTGTAAGGTTTCTTGATTTTTCATAATAGTATCTTGTGTGAAGCTGATGTTCCAGATAAAGGTTTGGTTGAAAAGAGCTACAATCTCATCTGGAATATATTCACTGTCAGGTGGATTTTGGTCAATGAGAGTCTCAACCGGTTTGCGTACGAGGCGTTGTGCTATTCTCCCAAAGAGGATAAATGTAGCTTGAGCAGTATCATCAGCAGCGATCAACACAACCTTGTATCTACATGCAGAATAGAAATAGTTATAGCAGTTTTGATAACTGTGAAATAAGCATGGAGGAAATTGTGCCAGCATATTCTTACCTTGGCACTGGTATGCCTACATTGGAGCAGCTGGTGCATTTATAGGTGGAACCATATGGTTTTGAGGTCTTGTAGCATATGTCACATGAATAATACCACCAGGAGCTGTTGCTTGATATGCCTTTAATAGTCACTCTGACTATAAAACGTGCTCGCTGCAAAGAAATATGATTTTATCATTTTTGTCAAATAAGAAAGGACAATATTGCAGTAACAAAGCCTGAGGTGGCACTGACCGCATGTTTGTGTGGGTTGAGAGCAAGGATTTGTGCTATGGTTTTTTCTTCTGGAATATCCTGGTTAAACCCTGTGGTAGCAGTTCAACCCACTTGATAGGTTGAAAGTTTGCGCTAAAGCTACAGAAAGAAGATATCTTAAATAATAATGTATCGCAGGGAAAATGTATATGTAAATGGATGATTGTGTAAGCATTAAAACAATAATATAAGCTTGTGGTGTCACCTTTCTTTTAACTCAAGCACTTCAGGCATATCAAGGTTAATCTACCATTTGCATGGTGAACTTCCATTTAAAGTTAGTCCTGTATATAATTGTATTAATAAATATGTACTGCAGATTTACAGAAGGCATGAAAAGATTTTGGTACAAATTTATAGAGATATACCTATCCCTTTGTAGTTCTTGACAACTGTTCCAACAAAAACAATAACCTGAGGTTTCTTTTGACCAGCATTGTATAATTCTTCTGCATTGAATGCAGCTGCAGTATTTCCCCATAGTGTGATAGGCAGTGTAGAATTGCTAGTTTTATAAAATGATTATAAATTTTTGGTGATCAATATTAGTAACTTGTTACAATAGTTAGTGTGGATAATGTAAGGTAAAGGCAGTTTATAACAAAAGAAAATTTCAGTCTATACTGTAGCTTACCTTGCATCCCAAATCTGCATTGTTCTTTTCAAAGTTTCTGTGTTTCTTGATTTTGGGCGTAGAGTGTCTGTTGCACCAATTTCAGTTATGACACCCATAATATCTGGTTAAAGAGAAGATATATGTAAACAATAAACCACTAATGTATAAGAAGTAAACATAGGAAGACAAAAAAGGGATAAGGAGGTTATACCAACATAGAAAGCATTTTTGTCCACAAGAGACGGGACGTCTTGAAAAGGTGTCAATGAAAAAGTTATGGCAGGGAAATCATCAGAAGCATCAATGCATTCTTCTAAGGTTGTCCATTTAGTGAATGAGATCATCAAAGGGTTCGTAACTGGCCTATATGTTCAGTTTGCATATCTGACAGAGAAGGAGTCAAAGTAGTAAACCTTCCCTTCCTGTAGAAGAGTCCTAAGCTTAATCATGGCAGGTGGATAGATTTGAACATGGATGCTATTGCCCTGCATATTGTGTATATAAAGCACCTTGTTAGTACCATATTTGTATGTAAGTATTAATAAAGAAGAAATGAGTGTTAATTAGACTATAACCTTTTCATCCAGCAAGACAAGATCAGTGTGGAAGATTTTTGTTTCATCATTCAGATCATGGTAGTCCCATTGCCTAGATACTCTTGCCTTGAACTGTTTATTAGTGTCCCCATACATAAGGTCTGAAATAAGCACGTATACCATTGGAAGCCTGTAATTAAATATTGAAGATATTTAGTTTTACGTATATATAAAGCATCAATGTAATGAACTAAGCAGTGAGAAAATAGCACATGGAAATCTAGTAGTCTGTTGGTGCACCAGTGCTACAGCATATACTACATGTGAGCACAATATATATACTCCAAGATTTATACTACATTGCATATACTACATGTGAGCACAAAAGCCATTGCAATTAGCTGATGAGGGAAAGCATGCTACACATGGAGTGGTGAAGCCTGCAATAGGAAAGAACGTCCACTGTGACACCAAGAATGTAGGTAAACATAGAGATAAAATATGCAGAGCGGCAGCGAGGGCACACCGCTTCCATTGTAGCAGAAAGTATCTCGGTATAAACAACATTTCTTGTTTGGTTTCCACTTGACCCGTCATCGTTTTCAATCAGTATTTTGAGGCCTGATCGGTTTGTTGCTCTTGAAATAGCAACATAGAGTTGCCCATGCGTAAAGACAGGTTTCCTAAGGTATATGCCAACCTGCTCAAGTGTTTGTCCTTGGCTGTTGTTGATAGTCATTGCATAACAAACTCGAACTGGGAATTGTCTCCTTTGTAATGCAAAAGGCCATTTCATTTTCGATGTGCTTAGTGTAATTCTTAGTATATAAACTGTTTCACCGATGTTTGATCCAGTTAGTATAGTACATTGTAAAATTGTTTCGCCTAAAGCAATAAGTAATAGTCTTGTTCCATTACAAAGGCCTATTGATTGGTTCAAATTTCGTAGAAGCATAACAACACTACCTTCCTTTAAAACAAGTTTGTGTGTAGGAAAGTTAGTTGCTACACCTCCTAGAGTCTGTGTAGGATCAAATGCACAAGCCACAGTATGCATGCATGTTTGGCTACTTTTGCTATGAGACGTTTGAGAAACACTAAAAACCAAAATTTTGGGACCCAGTAACCTCTTTTCATCATATTGCCTCATGTTAAAATACTACTGCTATTATCAAACAGAGAAGAACTGTAATATATTAGTAGTTTAACTCTCAAATATATTTGTAAAAAAATATTACATTACACAATGCAAAGCAAAGTCTTTGAAAACTAAGGTCCCAACTCCCAACAATTTGCTGGGTCTTCACTTTTGAGGAAGACCTGTAACATACAAAATACTCTAAGCAGGGACATACATTAAGCCTAATGCATCAGAAAATGTTCCTTTACAGTGCACTGAACCTCCCTTTGGTCTGACGATTAAATCATTGTACAACCAATCGTACTGTTTATACACTATAAGATGTAACAAAGCTGAACAGAACCCTATGTATATACAAAGCATGAGCATCATGAATAAATAGGCATATATGATGAAATTGTGGGAGCATGTTCTGGAAAAACCTCACATCATACAGCTAGTATAAATAAAATATCAGCAGCCAAGCTCCAATATTCTAGAATCATTGAATACTAATAGCACAATACAAAAATCATATCATGCAGTAGGCATGTTTAATGTGAAGTAATCAATATCGCACTAAAGCAAAAAAAAAATGTAGTCACAGATACCCCTGAATATAGATATAAGAGGTGGCTTAAAATAATTGCGTGCAATAATAATCATGGATTTGACTTAACATCTTGCAGAATATCATAAAAAAAGAACTAAACTTGCAAAAAAGGCAAAAAAAGACTTAATAGTTTAAAGGCACACTACCCAATTTGCAGAACTATCAAGCCGCTTCAACAGTTTAACAACTGCAGCACTAATATATCACTTACATAACAGCAAAACTGCCCTGCTGAAAGCTCAGAATGAGATATGTCACTCCGAAGCAACAACAGAAAAAGAATGTTAAAAGGAGTTTATATATAAAAACAAATGCCTAATTAAAGTGCAAAATTAGTCCATTTGGAAGCCTTCACAGCAAACTGAATTTCTGTCAACTCGCTGAATAAATATCTTGCACTATATAAAATAGATATATTTTGTTTCAAAAGGGAAAATATGTCTTGCAAGGAACCCTGGCACTCTCCCACTCTCCTAGCCATCATATAAACTCCATCATACATGAGTATATTTTCCATGTTCCAAATCACTGGGTGTTTATTTAGATCTCAATTTAATTTGTGAAAAGCGAGAACAGGCAAGAAGCAAAACTTTTGCTTTGAGGTCGCAGTGCGCGGATTGATTACTTGTATTTTTTTTACCAGAGATAAACAATATTTAATAATAGAGGTTATATCTTTAAAACTTCATATGGCAAGCTTGTCTTAAAGATAATTACTAACTTTTCCCAAAAAAAAAATCAGAGGTAATGTGCAAAAGTTGTGCAGCCATGTAGGATTAAAACGCCAAATGCATATTTTACAAACTATCGAATGATAGTTTTAATTTTACTCTAGATAAAGGGAGGTAGAGTTAGAATCTAGAAGCATGCAGAGCTAGAAGCAGGACAAAACGAGGCATCAATAGCAAACATATTTAGATGGAAAGAGGAAGTTTTACAATAATAGCTCCAAAGCAAGAAAAGATGACATCTGGAAGAACAAAGCAAAAACCTAGCTGACTTTGATAGAAAACATGAGGCAGAGGAAAGCAACATTCTTATGGGCAGCAAGGGACAAAATATTAGGAAAGAGAGTATGCAAGAAGTGTATGCACTGTGCAACGGCTACAAAAGGTACTGCAGTGACCATTATGACTGCAATGGCTTACGAAACCGAGAACACGCATGTACCAAGCGCTAAGTGTCACAGGTAAGCTATCAATATAGTAACAAACAAAGCACCATAAATGCACAATATCAAAAAGAAGCAGAAAATAGTGCAAAATAGTAATCAATAAACCGAAAAGGAAATATTGAAACATAGTACAAGACAGATGGGAATACCTTATACGAAACAGCACCCAGTGAGTTGACAACGCGGCAGAAGCAACGTAACCAAGAAAATGCCACGCAAGACAGATACCCACAAAAGACAAAGACCTCGACCAAGAAATAGAAGAAAGTCTAGGAAAGGATAGTCACCAATAAAGTTGACCAGAGCTGCACAATAGAAAGAGATCATTAGCAAACATAAACCTGATACAGAAGGCACAACAAATACATGAGATATTTCTATATCGTTTAAAGCAAATATAGTAGAAATAACCTAACCTGCCTGATTGAACCAGCAGCCCCAACATTCGCTGGCAAAATCAATCAAGAACCCTTGAAGCATCGATTCAGCCCGTGCAAATCCGGCCCTCTACAAACCAAGCCACAGATGAAAGAACGATCAGAAGGCATAAAAACAGGAAAAGCAACATCGAATAGCACCCACAACCAAATCACAATCACGTCTACATCTTATCGTGCCATATTCAATGATCAAAAGCAACAACAAATAGATGTGAAGTGCACGTGAGGACGCAAGCAGCAAAAGAGCGATGAAAAGTTGAAAACGATAAAGCAATGAAAACGATGGTGAAAGTTTGGAAGGGAAGAGGAGAAAAGAAGGCGGCTCCCAGCATTTGGAAAGAAATATACTACTCCAGTAGAGATGAAGGCAGAGACAAAACTGTAGCACTTCTAATAGGACCAACCATATCCACCAATAGGGGAGGAGCATACATGGACCCCATGGCATTCAACCCCACCTGAAAGTGGGATGGCCTAACGCATCTCATGTGACGAAGGAAACACCCTGGAGTATACACCATGAGAAAACTTCCTAATACTACATCCGATAAGGCCCCACAATACAGCCAGCAAGAGTATATAGACCAGGTTCACCAATATGCAACCGAGAAAAATTGAGCCAATGACAGCACGCGGCCTGCACCATCCCAAGCTGACAACCGCACTCCCCGAGCTGACAACCGCACTCACGCTCGTTTGCGCGCAAGATCAAGCATGCACAGTTGTGCCTCACTACATAGGCACATTCCATGGTAGGTCCGAAAGCAATGCTAACCATATGGCCTACACGCCAGCGACACCAAAGCCATAGACCAACTGCATTGACAATGCATCGCCCACCGTCAAACACACCGAAAATTCACAAACGCAATTGAACGACACCGCACAAATTATCACGGATAAAGGCCGCACGATCTAGGGCCTGTTTGGTTGGTGCCACATTTTGCCACACTTGAGGTATGTTAGTTTGACCAAATGTGGCTAGTGTTTGGTTTGTTTCTATAACTTTAGCATACCACACTTTCTACTCTTTTGGTCCCACTAGTCATAGACCATTTTCTTAGCCAAAGTTTGCCACAAGTGTGGCCATCAAATTTTGAGCCACACAATTTGCATCTTGCCACACCTTTGGTAAAAAAAACTATGGTAAATTGAGGTGGGCATCCAAACAGCCCCTAAATCAAACGGATAGGGTGGCAAGCAGCCACAAAAGCCCACCAAACTCACCAGGATCCTAGTCGTGGTTGACATGTGAGGAGTCAACAGCATCCATGGCAGCGGCAAACCGTGGTGGGGAAGAGCAGAAAACATCAATGCTTTGGGCTCCTGCATGTAAATTCTCCCATCGCCGCCAAGCTGCTACTGCCGCCACCACCGAGCTCAACACACCCGACAACCCTGAATGTCCTAAATCGAACTTTCCCATCAGCTTTGGATCTGGATCAGACAGAGAGGGAAATTGTGAAGAAAGAAAGGGTGGGTGAGCTTGCCCTTTCCCTCTGGAGCTCACCACTGAGGAAAAACCGCTGGTGTGGACGCCATTGATGAGCCACCGGATCCGCTGGCAAAGAAATCGCGGCTGCCGCATCCAACACCCACAGCCTCCCCTTCGAGTCTGCGTCAGCGGCGGCGTAGCAAGGAGAGCACCGGCAGTGAGGGCGCTGCGAGGACACCACCCATCCACAACATCGATCCCCTTCGAGCGGAGAATGGCAGCAACGTAGGGAGGACACCCGGCGGCGGCCACGGCACTGGGAGGACACCCAGCGGCGGCCACGGCCAAGCCAAATCCAGGCGCCGCGCAGGAGAGAGCGAGAGAGATGAGAGGGGCATGGCGGCTGGGAGTTTTTTCCTTTTTTTTTTACGCGCCT
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| CDS seq | ATGGTATACGTGCTTATTTCAGACCTTATGTATGGGGACACTAATAAACAGTTCAAGGCAAGAGTATCTAGGCAATGGGACTACCATGATCTGAATGATGAAACAAAAATCTTCCACACTGATCTTGTCTTGCTGGATGAAAAGGGCAATAGCATCCATGTTCAAATCTATCCACCTGCCATGATTAAGCTTAGGACTCTTCTACAGGAAGGGAAGGTTTACTACTTTGACTCCTTCTCTGTCAGATATGCAAACTGA |
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| Protein seq | MVYVLISDLMYGDTNKQFKARVSRQWDYHDLNDETKIFHTDLVLLDEKGNSIHVQIYPPAMIKLRTLLQEGKVYYFDSFSVRYAN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0642100 | Os07t0642100-01 | Chr07 | 26719124 | 26727238 | - | irgsp1_rep | ||
| CDS seq | ATGGTATACGTGCTTATTTCAGACCTTATGTATGGGGACACTAATAAACAGTTCAAGGCAAGAGTATCTAGGCAATGGGACTACCATGATCTGAATGATGAAACAAAAATCTTCCACACTGATCTTGTCTTGCTGGATGAAAAGGGCAATAGCATCCATGTTCAAATCTATCCACCTGCCATGATTAAGCTTAGGACTCTTCTACAGGAAGGGAAGGTTTACTACTTTGACTCCTTCTCTGTCAGATATGCAAACTGA
More
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| Protein seq | MVYVLISDLMYGDTNKQFKARVSRQWDYHDLNDETKIFHTDLVLLDEKGNSIHVQIYPPAMIKLRTLLQEGKVYYFDSFSVRYAN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0113000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45750 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0390300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0278200 | SBH | 3.3970695 | 7.099484 | 14.8446035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0354200 | RBH | 12.3677015 | 23.3150625 | 5.744773 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
