Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0588700 | OGI:07066690 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:23980540-23981251 | ||||||||
| Gene Symbol | ZFP245, OsZFP245, DLN192, OsDLN192 | ||||||||||
| DNA seq | GTCGATTTCATACCACTATGGGGCTAAACGAGAAGCCATTGGTGCCTCCGTTGTCTCCAACGCCGGTGGACTTCCGAGCCCATCAGGTGTTCCCATCCAAGCACCACGATTTTGACACTAGCAAGAGTCGTAACATCTCTGGTAGTGTCGCCATCGGCAGTGATTCTGAGGAGGAGTACTTGGCGACTTCTCTCTTGATGCTCGCACATGGCATTCGGGACGAGACCAAGGACATCCGAGGGATGGGAGACGTAAAAGGTGTGGGTGTTGACACTTTGGAGCTGGTGAAACCAAGCCAACGGGCTTATGAGTGCTCGGTGTGTGGCAAGGTGTACTGGTGTTACCAGGCGTTGGGTGGGCACATGACGTGCCACCGCAACCTATTTGCACAAGTGGTGGCCGGTGATGAGTTGTCCTCCGATAGGACCATGGTGGTTAAGGGGCACAAGTGCTCTATCTGTCGCCTTGAGTTCCCATCTGGGCAGGCGCTAGGAGGACACATGCGGGTGCACTATGTGGGTGGTGTTGAAGGAGGCTCTGTCAAGGAGAAGAACGTTGTGAAGACCAAGGTTACAGGAGCACTGAAGCTAGTGTTGAAAGACTTTGACCTGAACGTGCCTGTTGTGGCAACGATGGTGGGAGACGAGGCTGAGAGCTCACATTCAGAGGCCAAAGCGCGGATGATGACACTCCCCTAACCAGCGCAATACTT
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| CDS seq | ATGGGGCTAAACGAGAAGCCATTGGTGCCTCCGTTGTCTCCAACGCCGGTGGACTTCCGAGCCCATCAGGTGTTCCCATCCAAGCACCACGATTTTGACACTAGCAAGAGTCGTAACATCTCTGGTAGTGTCGCCATCGGCAGTGATTCTGAGGAGGAGTACTTGGCGACTTCTCTCTTGATGCTCGCACATGGCATTCGGGACGAGACCAAGGACATCCGAGGGATGGGAGACGTAAAAGGTGTGGGTGTTGACACTTTGGAGCTGGTGAAACCAAGCCAACGGGCTTATGAGTGCTCGGTGTGTGGCAAGGTGTACTGGTGTTACCAGGCGTTGGGTGGGCACATGACGTGCCACCGCAACCTATTTGCACAAGTGGTGGCCGGTGATGAGTTGTCCTCCGATAGGACCATGGTGGTTAAGGGGCACAAGTGCTCTATCTGTCGCCTTGAGTTCCCATCTGGGCAGGCGCTAGGAGGACACATGCGGGTGCACTATGTGGGTGGTGTTGAAGGAGGCTCTGTCAAGGAGAAGAACGTTGTGAAGACCAAGGTTACAGGAGCACTGAAGCTAGTGTTGAAAGACTTTGACCTGAACGTGCCTGTTGTGGCAACGATGGTGGGAGACGAGGCTGAGAGCTCACATTCAGAGGCCAAAGCGCGGATGATGACACTCCCCTAA
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| Protein seq | MGLNEKPLVPPLSPTPVDFRAHQVFPSKHHDFDTSKSRNISGSVAIGSDSEEEYLATSLLMLAHGIRDETKDIRGMGDVKGVGVDTLELVKPSQRAYECSVCGKVYWCYQALGGHMTCHRNLFAQVVAGDELSSDRTMVVKGHKCSICRLEFPSGQALGGHMRVHYVGGVEGGSVKEKNVVKTKVTGALKLVLKDFDLNVPVVATMVGDEAESSHSEAKARMMTLP |
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| Function | Zinc finger protein ZAT10 [UniProtKB/Swiss-Prot:Q96289] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0588700 | Os07t0588700-01 | Chr07 | 23980540 | 23981251 | + | irgsp1_rep | ||
| CDS seq | ATGGGGCTAAACGAGAAGCCATTGGTGCCTCCGTTGTCTCCAACGCCGGTGGACTTCCGAGCCCATCAGGTGTTCCCATCCAAGCACCACGATTTTGACACTAGCAAGAGTCGTAACATCTCTGGTAGTGTCGCCATCGGCAGTGATTCTGAGGAGGAGTACTTGGCGACTTCTCTCTTGATGCTCGCACATGGCATTCGGGACGAGACCAAGGACATCCGAGGGATGGGAGACGTAAAAGGTGTGGGTGTTGACACTTTGGAGCTGGTGAAACCAAGCCAACGGGCTTATGAGTGCTCGGTGTGTGGCAAGGTGTACTGGTGTTACCAGGCGTTGGGTGGGCACATGACGTGCCACCGCAACCTATTTGCACAAGTGGTGGCCGGTGATGAGTTGTCCTCCGATAGGACCATGGTGGTTAAGGGGCACAAGTGCTCTATCTGTCGCCTTGAGTTCCCATCTGGGCAGGCGCTAGGAGGACACATGCGGGTGCACTATGTGGGTGGTGTTGAAGGAGGCTCTGTCAAGGAGAAGAACGTTGTGAAGACCAAGGTTACAGGAGCACTGAAGCTAGTGTTGAAAGACTTTGACCTGAACGTGCCTGTTGTGGCAACGATGGTGGGAGACGAGGCTGAGAGCTCACATTCAGAGGCCAAAGCGCGGATGATGACACTCCCCTAA
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| Protein seq | MGLNEKPLVPPLSPTPVDFRAHQVFPSKHHDFDTSKSRNISGSVAIGSDSEEEYLATSLLMLAHGIRDETKDIRGMGDVKGVGVDTLELVKPSQRAYECSVCGKVYWCYQALGGHMTCHRNLFAQVVAGDELSSDRTMVVKGHKCSICRLEFPSGQALGGHMRVHYVGGVEGGSVKEKNVVKTKVTGALKLVLKDFDLNVPVVATMVGDEAESSHSEAKARMMTLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0588700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g39970 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0437200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021540 | RBH | 0.0 | 0.000000 | 0.230207 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021560 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0021470 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0021320 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0021410 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0391700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0021840 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0404900 | RBH | 0 | 0 | 0.079583 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0021150 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0021310 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0021200 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0021460 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0021180 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G021080 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0021140 | RBH | 0.0 | 0.0 | 0.0 |
