Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0583300 | OGI:07066060 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:23624364-23627325 | ||||||||
| Gene Symbol | C3H51, OsC3H51 | ||||||||||
| DNA seq | TCAGTAGAGACCAAGGCTATCTGGAAGAATGATCTCATCACTGCAAAACAGTTCAGACGACTCGGATGTTATAACTAGAAATGCCAGATGAATTATCTTGGAAAACAAAAAAGAATTAAAGAGAACTGAAATAACATAAGTAGGAACAGTTACCTATCTTCATATGCTGAAGCTTCATCCAAATCATCCGACCTGTGTGATTTTTTTTTCATGTTGTTACCTGGAAGATTTACATGAGACAAAATCAGACATGACAAGGAAAACGACTGAATCGTAATCATTCCCTCAGAAGTGACACAGTACAAATCTAAGTGTAAGAATTTGCTAACCTATATAATGCTCATTAGTGACACCGAAACCTGATGTCCTGTGTTCACGATAGTCAAATTGCTTATTTTTCCGATAAATTTTTCTGTATCAGTAAATGGGAATAGAATGTTGGTTATTCCTCAAGTTGAAGATATAAAGAGCAAAAGAAAATTACACAAGGTATAACCAGCAAATATGAAATATTAGTTCACCATTTCTCTAAAAAGAATAGTTATAAAGAAACTACACCAATAAAGTCTTCACTGATAGACAAAATTCAGTCAACAATTATAACTGAGCAAGATAGGCTAATGATTTTACAAACGATGGTATGTGTAGAACAGTGATAAAAATGCAAATTGAACCCCTAATCTGATGTAGTGCTGTAAATATGAAGTATAAGCATGGAATCAATCTCTGCAAAAATGATATTCTAGATCTGTCCTGATTGTGAGATCAAATTAGCCCCACTGATTACTGTAATGTAACATGGGGCCTTGGTCTTTGCTACACTGTTCTTTGACTTCTTTCTTTTTTTTGGATGGTGCCTTTGCTATAGTGTGGCCAATGGTAACCTTCAAACAACTATCAACTTGACTTCCAGAAACACTCTTCAGCCATGTCATTCTTCAAATAAAATAAATATTATTGCATTTATGGAATTTTCATGTGTGTATGGATGAGGGGTATTGTTCTGTATGTTGTAAACCCGCATTACATAATCAGATCCTTAATAGTAAAAACTATAGGCTTAAATTGGGTAAACCATAAAGGGGAAGCAAATATCATTTTTCATCTTTAACGTCTTGGTCTGCCACGCATGAAAGCAAGGAATCATTTTAATGAAATCGATAGTGGTTTCCAATGCGTGGTAGTAATAATGTCAGAAACAGCAAGCGACATAAAACAGCCCTATTGAACAGTAGAGTGTTACCTTAGTTCAGACTTTTCCATGTAGCGCTTGACAAGAACTCGCAATCCACAGATGAAGTGAGCTGTCCCCTTTGATAAGATAAGCCTCACTGTCTCAGTGTATAGGAAGCTCACAAAACCAAACATCCGCTTCTCCTGATAGGGAATTCGCACACCGGAGACAGGCCCAAATTGCCTGGCATTATCAAGACAATATTGTCATCACAGTAACATAATAACATGACAAATTGACAATTCACACCTAGTAACAATAAAGTTAAGGCAATACTTGAAGTAATTCTCGACATCATCATCAGTGAATTTGCTGTGAACAGGGAAGGTCATATAAATCTGGTTAGACCCAGTGCCAGTATCCATCAAGTTGCAACTGTGAGCCAAGCCCAAGCAATCCATGTACTTCTTCCGAGCATCTTCCACCAGGACTACATGATACTGTCCATGTTCTCTGAAGTTGAAAACGGAAAGAGCCATGATCAGGATGTGAAGAAAAAAGAAAAATAATCAATCATGATAGAGCCATATCAGAAATTCATAGAAGAAAACCTCTCGACCACTCTGATGGTGTTAAGCCCCATGAGCAGACTTGTAAGACTGCAACCAGTCCTTCCATGCTGCTGGCTCTCAGTGAGCCATCCATCAGGCCGCAGGGGCTTACCGTACTTCTCAAAGTACATCGACGGCAAACGATCGACTGCGACTGGTGGTGGTATTCCGATCAGGAGTTCTCTGATCTCCATATCCAGCTTGCTCAGCGACGCAAAGGGGTGAACTTGCCTGGGATTATGCAGCTCAGGGACGGACCCATGGAAGAACTGACAGTTGACACCTTTCTTGCAGTAACCCCTGAAGAAATGGAAATGGCAAGGCTTGGAACTCGACTTCGAGCTACTATGAGGATGTCCGACGAGATTTCGACCAGCATTTGGAGAATTCCTTGGCATGCTCAAAGACTGCAACTCTTCCTTTAAGCAGATGGATTCAGGAAATGAGCTCTGCAATGCTCCAGTTTGATCAATTAATGGGCGACGTTGAGCTTGGATTCCACGATAATTGCCGCTTGATTGACGCTGAGCCCTCAAGTAAGCCAGTGGGAGTTCTTGCCCCGGTGGAGGAGGCAGCAGTGAGGGTAAGGAACGTAGATGCTCGTCAGGACTAGCTGCATACTGTCTGATCTGCGGGTATGAACTTGTTGAGAGGATGTAACCACCGTTTGCACGCGATGGCTCGAATTCCCGAGCTCTATTCAGCAGCACTGAACATTTGTTCATAGCCATTTCTTGATTCCTGCAACAGAAACGAAATGATGGGATTTTCATTCTATAAAAAAAAGTTCCACCTAGAAAAAGTAGGAGATTGTTTTCTGATAATTTCACTGCAATGCAAAACAAGAGTGAGATTGTTTTATGATTAATTAAAAGGTTAAGATGCAAATACTGTGACAATATAGAACTTTAGTCCAAGCAAAAACGAAAAATTGCACATTCCACTGTTTCCACCACAAACAACACCGAGTTCGTGTTCTCCCAGTTGCTGCTTCCAAAAATCAAACGACAAAAATGCAGAAACAATTCTGGATAACAAATTACAACTCTACCTTAACTAAACCACCAAACCTCTTCAGAATACGAGAAGAACCCATGATTAACAAATGCTGTACCAAAAAACCCATCCCTATAATATAACAAAACCGAACGAATCCAAGATCAAGAAATGCCGTACC
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| CDS seq | GGTACGGCATTTCTTGATCTTGGATTCGTTCGGTTTTGTTATATTATAGGGATGGGTTTTTTGGTACAGCATTTGTTAATCATGGGTTCTTCTCGTATTCTGAAGAGGAATCAAGAAATGGCTATGAACAAATGTTCAGTGCTGCTGAATAGAGCTCGGGAATTCGAGCCATCGCGTGCAAACGGTGGTTACATCCTCTCAACAAGTTCATACCCGCAGATCAGACAGTATGCAGCTAGTCCTGACGAGCATCTACGTTCCTTACCCTCACTGCTGCCTCCTCCACCGGGGCAAGAACTCCCACTGGCTTACTTGAGGGCTCAGCGTCAATCAAGCGGCAATTATCGTGGAATCCAAGCTCAACGTCGCCCATTAATTGATCAAACTGGAGCATTGCAGAGCTCATTTCCTGAATCCATCTGCTTAAAGGAAGAGTTGCAGTCTTTGAGCATGCCAAGGAATTCTCCAAATGCTGGTCGAAATCTCGTCGGACATCCTCATAGTAGCTCGAAGTCGAGTTCCAAGCCTTGCCATTTCCATTTCTTCAGGGGTTACTGCAAGAAAGGTGTCAACTGTCAGTTCTTCCATGGGTCCGTCCCTGAGCTGCATAATCCCAGGCAAGTTCACCCCTTTGCGTCGCTGAGCAAGCTGGATATGGAGATCAGAGAACTCCTGATCGGAATACCACCACCAGTCGCAGTCGATCGTTTGCCGTCGATGTACTTTGAGAAGTACGGTAAGCCCCTGCGGCCTGATGGATGGCTCACTGAGAGCCAGCAGCATGGAAGGACTGGTTGCAGTCTTACAAGTCTGCTCATGGGGCTTAACACCATCAGAGTGGTCGAGAGAGAACATGGACAGTATCATGTAGTCCTGGTGGAAGATGCTCGGAAGAAGTACATGGATTGCTTGGGCTTGGCTCACAGTTGCAACTTGATGGATACTGGCACTGGGTCTAACCAGATTTATATGACCTTCCCTGTTCACAGCAAATTCACTGATGATGATGTCGAGAATTACTTCAAGCAATTTGGGCCTGTCTCCGGTGTGCGAATTCCCTATCAGGAGAAGCGGATGTTTGGTTTTGTGAGCTTCCTATACACTGAGACAGTGAGGCTTATCTTATCAAAGGGGACAGCTCACTTCATCTGTGGATTGCGAGTTCTTGTCAAGCGCTACATGGAAAAGTCTGAACTAAGAATGACATGGCTGAAGAGTGTTTCTGGAAGTCAAGTTGATAGTTGTTTGAAGGTTACCATTGGCCACACTATAGCAAAGGCACCATCCAAAAAAAAGAAAGAAGTCAAAGAACAGTGTAGCAAAGACCAAGGCCCCATAAAAATTTATCGGAAAAATAAGCAATTTGACTATCGTGAACACAGGACATCAGGTTTCGGTGTCACTAATGAGCATTATATAGGTAACAACATGAAAAAAAAATCACACAGGTCGGATGATTTGGATGAAGCTTCAGCATATGAAGATAGTGATGAGATCATTCTTCCAGATAGCCTTGGTCTCTACTGA
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| Protein seq | GTAFLDLGFVRFCYIIGMGFLVQHLLIMGSSRILKRNQEMAMNKCSVLLNRAREFEPSRANGGYILSTSSYPQIRQYAASPDEHLRSLPSLLPPPPGQELPLAYLRAQRQSSGNYRGIQAQRRPLIDQTGALQSSFPESICLKEELQSLSMPRNSPNAGRNLVGHPHSSSKSSSKPCHFHFFRGYCKKGVNCQFFHGSVPELHNPRQVHPFASLSKLDMEIRELLIGIPPPVAVDRLPSMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGLNTIRVVEREHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTGTGSNQIYMTFPVHSKFTDDDVENYFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSELRMTWLKSVSGSQVDSCLKVTIGHTIAKAPSKKKKEVKEQCSKDQGPIKIYRKNKQFDYREHRTSGFGVTNEHYIGNNMKKKSHRSDDLDEASAYEDSDEIILPDSLGLY |
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| Function | Putative zinc finger CCCH domain-containing protein 51 [UniProtKB/Swiss-Prot:Q84ZT0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0583300 | Os07t0583300-00 | Chr07 | 23624364 | 23627325 | - | irgsp1_rep | ||
| CDS seq | GGTACGGCATTTCTTGATCTTGGATTCGTTCGGTTTTGTTATATTATAGGGATGGGTTTTTTGGTACAGCATTTGTTAATCATGGGTTCTTCTCGTATTCTGAAGAGGAATCAAGAAATGGCTATGAACAAATGTTCAGTGCTGCTGAATAGAGCTCGGGAATTCGAGCCATCGCGTGCAAACGGTGGTTACATCCTCTCAACAAGTTCATACCCGCAGATCAGACAGTATGCAGCTAGTCCTGACGAGCATCTACGTTCCTTACCCTCACTGCTGCCTCCTCCACCGGGGCAAGAACTCCCACTGGCTTACTTGAGGGCTCAGCGTCAATCAAGCGGCAATTATCGTGGAATCCAAGCTCAACGTCGCCCATTAATTGATCAAACTGGAGCATTGCAGAGCTCATTTCCTGAATCCATCTGCTTAAAGGAAGAGTTGCAGTCTTTGAGCATGCCAAGGAATTCTCCAAATGCTGGTCGAAATCTCGTCGGACATCCTCATAGTAGCTCGAAGTCGAGTTCCAAGCCTTGCCATTTCCATTTCTTCAGGGGTTACTGCAAGAAAGGTGTCAACTGTCAGTTCTTCCATGGGTCCGTCCCTGAGCTGCATAATCCCAGGCAAGTTCACCCCTTTGCGTCGCTGAGCAAGCTGGATATGGAGATCAGAGAACTCCTGATCGGAATACCACCACCAGTCGCAGTCGATCGTTTGCCGTCGATGTACTTTGAGAAGTACGGTAAGCCCCTGCGGCCTGATGGATGGCTCACTGAGAGCCAGCAGCATGGAAGGACTGGTTGCAGTCTTACAAGTCTGCTCATGGGGCTTAACACCATCAGAGTGGTCGAGAGAGAACATGGACAGTATCATGTAGTCCTGGTGGAAGATGCTCGGAAGAAGTACATGGATTGCTTGGGCTTGGCTCACAGTTGCAACTTGATGGATACTGGCACTGGGTCTAACCAGATTTATATGACCTTCCCTGTTCACAGCAAATTCACTGATGATGATGTCGAGAATTACTTCAAGCAATTTGGGCCTGTCTCCGGTGTGCGAATTCCCTATCAGGAGAAGCGGATGTTTGGTTTTGTGAGCTTCCTATACACTGAGACAGTGAGGCTTATCTTATCAAAGGGGACAGCTCACTTCATCTGTGGATTGCGAGTTCTTGTCAAGCGCTACATGGAAAAGTCTGAACTAAGAATGACATGGCTGAAGAGTGTTTCTGGAAGTCAAGTTGATAGTTGTTTGAAGGTTACCATTGGCCACACTATAGCAAAGGCACCATCCAAAAAAAAGAAAGAAGTCAAAGAACAGTGTAGCAAAGACCAAGGCCCCATAAAAATTTATCGGAAAAATAAGCAATTTGACTATCGTGAACACAGGACATCAGGTTTCGGTGTCACTAATGAGCATTATATAGGTAACAACATGAAAAAAAAATCACACAGGTCGGATGATTTGGATGAAGCTTCAGCATATGAAGATAGTGATGAGATCATTCTTCCAGATAGCCTTGGTCTCTACTGA
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| Protein seq | GTAFLDLGFVRFCYIIGMGFLVQHLLIMGSSRILKRNQEMAMNKCSVLLNRAREFEPSRANGGYILSTSSYPQIRQYAASPDEHLRSLPSLLPPPPGQELPLAYLRAQRQSSGNYRGIQAQRRPLIDQTGALQSSFPESICLKEELQSLSMPRNSPNAGRNLVGHPHSSSKSSSKPCHFHFFRGYCKKGVNCQFFHGSVPELHNPRQVHPFASLSKLDMEIRELLIGIPPPVAVDRLPSMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGLNTIRVVEREHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTGTGSNQIYMTFPVHSKFTDDDVENYFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSELRMTWLKSVSGSQVDSCLKVTIGHTIAKAPSKKKKEVKEQCSKDQGPIKIYRKNKQFDYREHRTSGFGVTNEHYIGNNMKKKSHRSDDLDEASAYEDSDEIILPDSLGLY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0583300 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g39440 | RBH | 0.122924 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021050 | RBH | 0.0 | 0.0 | 0.464620 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021070 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0020990 | RBH | 0.0 | 0.0 | 0.485052 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0020840 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0020950 | SBH | 0.000000 | 0.000000 | 1.309282 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0386900 | RBH | 0.009105 | 0.0265455 | 0.0703395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0021380 | SBH | 0.0 | 0.0 | 0.106967 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0399500 | RBH | 0.0818855 | 0.040024 | 0.1224455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0020690 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0020850 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0020740 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0020970 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0020690 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G020580 | RBH | 0.0 | 0.0 | 0.259958 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0020640 | RBH | 0.0 | 0.0 | 0.000000 |
