Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0531400 | OGI:07057920 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:20803306-20805360 | ||||||||
| Gene Symbol | prx104 | ||||||||||
| DNA seq | TATTCATCGAGAGATCGAATTCGGTTCTCGTCTCGATCATCAGTTTGGCCTGTCGATCTCTGTCCATCTCTGACGACGCCGACGGCCATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGCTCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCACGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCAAGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGTAAAAATTACTAGCATATACTCTCTCCGTAAAAAAAAAACTCAACTTATTTGAATTTTATCTCACAAAAACTAACTTCTACCATCTTATTTATCCTCCGTATGTAAAACGAGAAGTTTTATTTCTTCAATACCCTTTACCCACCCATCACTCTTACTATTTTTATCAATGATTAAGAGTATTTTAGTCATTCTCTATCTCTACTACTTCTATTATTAGATTTATTTTGTAACGGAGGGAGTATATCAATTATCAAGAACAAGTTAAGCTATCAGCTTGTAATTGACAGCTGCAAATGTGGATGGAGAACTTACCCAAGTTTAAAATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGTTTGAGACTCGCTCCACTGATGAATTCTCCTGTTACTGTAGAGACGATGAGCAATGCAAAAGCTGATGCTGATCTGATCATCCGATTCTTGCTGTGCTCTGTCTTTTCAGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTATAGTAGTGCTAACCATGGACGATTCTAAAGCTACGTGCGATTTGCTGTACTGTTCTTGCTGTATGCCGTGTCAGAGTCAGGCACAATCTTGGTCTTCAGGTCGGGTCAAAATGACAGAATGAACTGAACCTCAATAATGACATTTCTGACTTTTTTTCTGTATGGAGTTGCTTTCTTGCTTTCTTATTAAACATTTGCGTGTTCAGAAATCATAGAAATGTTGAACATCTTTTAACCTTTTTTTTCAAAGCGTCAAGTCACATTCCGATTAAGATATCATTATCCCTGGCAATTTCTCGAACCGTAAGATGACACTGACAACAAGGGAGACAGTAATTAACACAGTAAATTATATTAATTCCTTTACATCACTGTTTCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAATTTCATGAGGG
More
|
||||||||||
| CDS seq | ATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGCTCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCACGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCAAGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGA
More
|
||||||||||
| Protein seq | MQQLLAMKLILTTLVVAVLALSAGTATATCDTLTVGHYRQSCRAAETIVRDTVKLYFSKDQTVTAPLLRLHFHDCFVRGCDGSVLLNATAASGPAEKDAMPNQSLDGFYVIDAAKAALEKECPGVVSCADILALAARDAVSMAAGNINGASLWQVPTGRLDGRVSSAAEAVANLPSSFADFAKLKEQFGSKGLNVQDLAILSGAHAIGNSHCVSFAKRLYNFTGKGDADPTLDRAYAAAVLRAACPPRFDNATTVEMVPGSSTTFDTDYYRLVASRRGLFHSDQALLQDREAAATVRVMARSSRQAFFRRFGVSMVRMGNVGVLTGAAGEIRKNCALIN |
||||||||||
| Function | Peroxidase 56 [UniProtKB/Swiss-Prot:Q9LXG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0531400 | Os07t0531400-01 | Chr07 | 20803306 | 20805360 | + | irgsp1_rep | ||
| CDS seq | ATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGCTCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCACGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCAAGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGA
More
|
|||||||
| Protein seq | MQQLLAMKLILTTLVVAVLALSAGTATATCDTLTVGHYRQSCRAAETIVRDTVKLYFSKDQTVTAPLLRLHFHDCFVRGCDGSVLLNATAASGPAEKDAMPNQSLDGFYVIDAAKAALEKECPGVVSCADILALAARDAVSMAAGNINGASLWQVPTGRLDGRVSSAAEAVANLPSSFADFAKLKEQFGSKGLNVQDLAILSGAHAIGNSHCVSFAKRLYNFTGKGDADPTLDRAYAAAVLRAACPPRFDNATTVEMVPGSSTTFDTDYYRLVASRRGLFHSDQALLQDREAAATVRVMARSSRQAFFRRFGVSMVRMGNVGVLTGAAGEIRKNCALIN
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0531400 | Os07t0531400-02 | Chr07 | 20803897 | 20805360 | + | irgsp1_rep | ||
| CDS seq | ATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGA
More
|
|||||||
| Protein seq | MPNQSLDGFYVIDAAKAALEKECPGVVSCADILALAARDAVSMAAGNINGASLWQVPTGRLDGRVSSAAEAVANLPSSFADFAKLKEQFGSKGLNVQDLAILSGAHAIGNSHCVSFAKRLYNFTGKGDADPTLDRAYAAAVLRAACPPRFDNATTVEMVPGSSTTFDTDYYRLVASRRGLFHSDQALLQDREAAATVRVMARSSRQAFFRRFGVSMVRMGNVGVLTGAAGEIRKNCALIN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0531400 | RBH | 0.0 | 0.0 | 0.208584 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g34710 | RBH | 0.0 | 0.0 | 0.114043 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017640 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017500 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017400 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017510 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0339000 | RBH | 0 | 0.0421675 | 0.006068 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018010 | RBH | 0.0 | 0.125018 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0353100 | RBH | 0 | 0.0351505 | 0.0167155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017410 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017400 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017660 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017440 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017390 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017270 | RBH | 0.0 | 0.0 | 0.0 |
