Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0507500 | OGI:07054330 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:19271812-19276185 | ||||||||
| Gene Symbol | NY1 | ||||||||||
| DNA seq | AAATCTAGCGTAGTCATCAAATCCATAGTAGTCAAATCAAATGCTACATAACCTGAATTCAACGATCAACGACATACATAGGAGTAAGTACCAGTACCAGAGCTCTTCGACCGTCTGCCTAAGCCTAACACACATGACACATGGACACCGAACACAACCGTAGTTCACTGCAAAGGTAGCACTACTGGTAGGCTAGTAGCAAAGCTGATGAGAGCAGCGGCCGCAGATTCACAGCACGATGGGGTCGGACGACTGCGAGCCCTTCCCTCCCACGCGCCTGAACCTCTTCGCCTGCACGCAGCTCCGGCTGCTCCGCCGCACCGCGCCGCCGCCGCCGCCTGATCCCTTCGCCGCCCCGTCCTCCTCCTCCCGCCGCCGCCGCCGCCGCCACTTCTGCTCCTCCTCCTCCTCCTCCTCCTCATCCTGCTGCTGCTGCTCATCAGACCGCTCCTTCGGCGGCACGGCGTCGTCGTCGTCGGCGTCGCCGCGCACGATCCCCGGAGCCTCCGCGTCCCCCGTGCCATGCGGCGCTTCCTGCTCGCGCGGTGGCATCACAGCCAGGGGAGGGATCACCGCGATCACCTGGGGCTGGGGCTGTGGCGCGGCGTCGCCTCGCTTAAGCGGCGGAGCAGGAGGGGAGGCCTCGATGAGACCGCGGATCCTGGACAGGGACGTCGCCAGCTCGGCGGGGAGGCGGTGTTGCTCCAGAAACCGCGCGACGGTCGGGAGCTCCTCCCTGACGCCCTCCACCTGCATGAACCGATCCAATCGATCACAACAACGAAACGCACGATGCAATCACCCGAACTGAACCGCGATGACACGCTCACGTCAATGTGACAGCTTCCTCAGCACGAGTGTTAGGGAGATGGATTCTAATCTAATCACTCGGTGCATGTCCACACGTTTATTATACGTTAGCTATATGACTATGATTTTTTTAAAAAAAATGACAAGATAGATTGATAACAAACATGCCAGCAAATTCGACTTCTGTAAGTTGTAACAATGATAACAAAGTTAATTGCGAATATATCTATACTAATTAAAATTTAATTTGCTACTTTTATTACAATTTAAATAAGTAAAATTTGAGCTTGCATATTTGTAGGATAACATATTATTACATATGAATCTACCTTGTTATTTTTTTTTTAATTTTTTTATAACCATTTAGTTGATAGTATGTAGCAAAAGGGTAGATGTCCACCTAAGTGATTAAAAGTGTTTCACCGACAGGTAGTTTTACCACGGATATCAGGCTGAGCCCAAGGGAAGCTCGCGCCATGGTCGCCGGAGTGAAAACATCTGCGGCGGCGGCGGCGGCGGCATCTGCTGTATGACCATGATCACCACCATCTGCAGCGTTGATCAGCTGCTGGAACCGTTCGATCTCTGAAGCGTACATCAGGCTCCAGTCCACTGCCGGGTTCCACAGCTGCCGCTGGAACGCGGGGACATCGTTGAGCGGGCGATGCTGTTCTTGCCCAAACTGGCGAGCGAACCGGTCCGGGGCGTAGATTTCCTTGAGGTTGAAGCTGACCAGCCATGTTCTGGAGAAGCAGAGGTTATCCGGAGCAGCGCAATGCTTCGGAATGGATGCAGGATCAACGCCCTTGTAGGGCTCCCAGTTGACCTGAAGTTGTTGTTCATATCATCATATGGTCTCAAATCAAATGGCAAGGGAAAGGATGAAATGCTGAACACAAAACTGTGGTGATGACTGATGAGAATCACAACTCAGATGGATAGACTTTTACATCAGAAACTTGAAGCAGGCCGAAGGCTTTCCTGATGTCTGAAACGTTCTTGGCCGGTTGAGAGATCGTGCTCCCTGTCCACTTGAGTACTCGTGGGAAGATGTGTTCTGGAGGATCATACATGTCAGGGCGCAATGCCGGAATATACTCATATATCCAGCCCTACAGACAGATATTCAGAATATATCAGAACATTTTCGCAATGGACACAGTGAAGGCACAAGTCACAAACTTGGTCTGTAAGGTAAAATTTTGTGAGAAACAAAAATGGAGAATTTTGTTATTTCCTATCATCTTTATGCCTTACTATCAATTACAATTCTCATGTTGAAGTTCATTAATCCTTTTCAGAAAACATGAACAGATCATAACAATCAAAATAGTTTTTTGATAGTTTCATAGAACTGGAAGATCATTTCCTACTCGAAATTCAAGTGATATTTTCCTATACAATGGTTTTGTTAAACATACCATGAGCAAAGCCGCGCTACCGAATAGCCTTTTTCTGGCAGAATGGGCCACGGCGATGGAGAGAGCCTTGTAGAGATGAGCAAGAGCAGCAGCACCCCAAGCATATTCCTGTACCTTGTCAAAGTCTGACAGAAGTGGCAAATACTTTGGTGAGACATAGCCCCTGTCCCTCTCTGGAAGTAAGGCTGATCCAATCAAGAACAGGAGATATGCCCTGGTGCCATACATGGTCTGATCATTGGTGGGGCGTTCCGGGATCCGGCTAAACTTGGATTGCAGCCAAGAGAGCTTCACATGGCTGCCCCTGCAGTCCCTGCAATCAGGCACTTGCCCCAGATACTGGAAGCAGAGGTCTTCGACCGACTTGTTGAGCACAGCTCCGGTTGTCACCACACGGCCTGTCACCGGAATCCCCAGTATGTAGGCGGCGTCCCTGAGTGAGGGTGCCATTTCAAAGCCATTGAGCTGAGCAGTGTTGGTCTCCTTGCTCCACAGTTCGAAGAATGCCATGAGCGCGATGCGATCGATGACTAGGCCTGCTGTGTGTATCAGGTTGCCGAGCCCGCTTGCATCGACCAATTGTTGCTGCTGCTCATTCAGCTTCCATGTGTCGAGTCTCTCCGTCGTCTGGCATACGGTTAGTTCATGGGTTCCCTGTATGTTTGAGCATCAAAATGTTATGATTTAGGTACAAACTATATATCACAAGAGCCAAAGGAAGGTTCAGCAAATTGGTGTCGCTTGCTCGTTGTTGATAAATAATAATTACCTGAATGACGCTTTTGTTTGTTGGTTCTGCCTCTGCGGATTCCATCTGGTTCCATTAAGAGAAGGAATGTTATGTGGTAAGTGTGCATACAATCCAAGAATTGCTCGCAGAGAAATTTCAGTTTAAGCATCCAGGTTAAGTACGGCAAGAATTTGCATAAGTTTGATAACAACTTAACAAGTCCTCAATGAGCGGTCTATTGCTTATATGAGCAACTGAACATGTAATTGAGACTTTGTTCCCCTCAAGGAAATGAAAAAATTAACTAGCACAGAATCTGGAAACTTTGACATTGGTAATCAAAAGGACTGTATATATCAGGCATGATGATAATAAGGCTGGGAAAAACTGTAGATACCAGGTTTGATTCACTAAAGTTCACCAAAAAACTGTAGAAGTTTTTAAACAGATGACGTGAGCTCTACCCTTAAGAGGAAGAGAACTGCAACCACAAAGAGCAAAAGCACTAGGAACAACTGCTTTAAATTTTCTTCAGAATAAGGAGAAAGCAAAATGCCAGGATTGGCCACATACAAGGTACAAAAGGACAGCAGCAACCAGCCAAGAAACCATCAAAGTTTACCTGAACAAAAAAGATACGTTGTGAAACAGGAACTGAACTACTCATCTAATCAACTGTAAAAATAAAGAAACAAAATCTGGAGGAAAATTGAATCGAAATGACGTAGATGAAGTTGGTTGTGCGCCTAACAGCAGCCATTTCCATCATCTTAAAATATTGCAGCAGATGAGGAAGAATACCAGCACTAAATTAACGAGTATACACTTGATCAAGAAGATGGTATACCATTTTAATCATAGAAAACATCACACAAAAGAGGGGGAACAAAATATCGAAGAAATACATCCGATAACCATCCATTTCCTTCTAAAACTGACTAGGAAGAGCAAAATAAAATTGACCGCTATCCTCTAAAACCCAACCACAAATATGGAAATCGGGACAGAAAACAAAGGGGAAAGGAGAAAAAAAAAACTGAAGACCATAGATGAGATGGAACCCTTACACAGAAGCTGGAGACCATCCATAGCAGTTGAAAAATTCAGCAGGAAAACAGAAACACACACCCCACACAGGCGATTCCCAGTCATAAGCACAAGGATGAAATGATGAAAGAATACCAAAATGCAGGAGCAAACAAAGCGATCCGGGATTCACCATGAACGAAGGAGATGCAAGGAAAAAAAAATACTGGCATATCATATCACACGATGAGAGTGATAGAAAAGAGAGAGCAAACTAACCAGGATCAATGAGTAGCCGCAGCAGCGAGCGAGAGGCAACAAGAGCACAGCAAAGAAGGCGAAGAGCTTCTTCTATGCAGGCGAGCGTTGGTTGGGCAATGAAAGGGC
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| CDS seq | ATGGAATCCGCAGAGGCAGAACCAACAAACAAAAGCGTCATTCAGGGAACCCATGAACTAACCGTATGCCAGACGACGGAGAGACTCGACACATGGAAGCTGAATGAGCAGCAGCAACAATTGGTCGATGCAAGCGGGCTCGGCAACCTGATACACACAGCAGGCCTAGTCATCGATCGCATCGCGCTCATGGCATTCTTCGAACTGTGGAGCAAGGAGACCAACACTGCTCAGCTCAATGGCTTTGAAATGGCACCCTCACTCAGGGACGCCGCCTACATACTGGGGATTCCGGTGACAGGCCGTGTGGTGACAACCGGAGCTGTGCTCAACAAGTCGGTCGAAGACCTCTGCTTCCAGTATCTGGGGCAAGTGCCTGATTGCAGGGACTGCAGGGGCAGCCATGTGAAGCTCTCTTGGCTGCAATCCAAGTTTAGCCGGATCCCGGAACGCCCCACCAATGATCAGACCATGTATGGCACCAGGGCATATCTCCTGTTCTTGATTGGATCAGCCTTACTTCCAGAGAGGGACAGGGGCTATGTCTCACCAAAGTATTTGCCACTTCTGTCAGACTTTGACAAGGTACAGGAATATGCTTGGGGTGCTGCTGCTCTTGCTCATCTCTACAAGGCTCTCTCCATCGCCGTGGCCCATTCTGCCAGAAAAAGGCTATTCGGTAGCGCGGCTTTGCTCATGGGCTGGATATATGAGTATATTCCGGCATTGCGCCCTGACATGTATGATCCTCCAGAACACATCTTCCCACGAGTACTCAAGTGGACAGGGAGCACGATCTCTCAACCGGCCAAGAACGTTTCAGACATCAGGAAAGCCTTCGGCCTGCTTCAAGTTTCTGATGTCAACTGGGAGCCCTACAAGGGCGTTGATCCTGCATCCATTCCGAAGCATTGCGCTGCTCCGGATAACCTCTGCTTCTCCAGAACATGGCTGGTCAGCTTCAACCTCAAGGAAATCTACGCCCCGGACCGGTTCGCTCGCCAGTTTGGGCAAGAACAGCATCGCCCGCTCAACGATGTCCCCGCGTTCCAGCGGCAGCTGTGGAACCCGGCAGTGGACTGGAGCCTGATGTACGCTTCAGAGATCGAACGGTTCCAGCAGCTGATCAACGCTGCAGATGGTGGTGATCATGGTCATACAGCAGATGCCGCCGCCGCCGCCGCCGCAGATGTTTTCACTCCGGCGACCATGGCGCGAGCTTCCCTTGGGCTCAGCCTGATATCCGTGGTGGAGGGCGTCAGGGAGGAGCTCCCGACCGTCGCGCGGTTTCTGGAGCAACACCGCCTCCCCGCCGAGCTGGCGACGTCCCTGTCCAGGATCCGCGGTCTCATCGAGGCCTCCCCTCCTGCTCCGCCGCTTAAGCGAGGCGACGCCGCGCCACAGCCCCAGCCCCAGGTGATCGCGGTGATCCCTCCCCTGGCTGTGATGCCACCGCGCGAGCAGGAAGCGCCGCATGGCACGGGGGACGCGGAGGCTCCGGGGATCGTGCGCGGCGACGCCGACGACGACGACGCCGTGCCGCCGAAGGAGCGGTCTGATGAGCAGCAGCAGCAGGATGAGGAGGAGGAGGAGGAGGAGGAGCAGAAGTGGCGGCGGCGGCGGCGGCGGGAGGAGGAGGACGGGGCGGCGAAGGGATCAGGCGGCGGCGGCGGCGCGGTGCGGCGGAGCAGCCGGAGCTGCGTGCAGGCGAAGAGGTTCAGGCGCGTGGGAGGGAAGGGCTCGCAGTCGTCCGACCCCATCGTGCTGTGA
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| Protein seq | MESAEAEPTNKSVIQGTHELTVCQTTERLDTWKLNEQQQQLVDASGLGNLIHTAGLVIDRIALMAFFELWSKETNTAQLNGFEMAPSLRDAAYILGIPVTGRVVTTGAVLNKSVEDLCFQYLGQVPDCRDCRGSHVKLSWLQSKFSRIPERPTNDQTMYGTRAYLLFLIGSALLPERDRGYVSPKYLPLLSDFDKVQEYAWGAAALAHLYKALSIAVAHSARKRLFGSAALLMGWIYEYIPALRPDMYDPPEHIFPRVLKWTGSTISQPAKNVSDIRKAFGLLQVSDVNWEPYKGVDPASIPKHCAAPDNLCFSRTWLVSFNLKEIYAPDRFARQFGQEQHRPLNDVPAFQRQLWNPAVDWSLMYASEIERFQQLINAADGGDHGHTADAAAAAAADVFTPATMARASLGLSLISVVEGVREELPTVARFLEQHRLPAELATSLSRIRGLIEASPPAPPLKRGDAAPQPQPQVIAVIPPLAVMPPREQEAPHGTGDAEAPGIVRGDADDDDAVPPKERSDEQQQQDEEEEEEEEQKWRRRRRREEEDGAAKGSGGGGGAVRRSSRSCVQAKRFRRVGGKGSQSSDPIVL |
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| Function | Protein MAIN-LIKE 1 [UniProtKB/Swiss-Prot:Q9SK32] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0507500 | Os07t0507500-01 | Chr07 | 19271812 | 19276185 | - | irgsp1_rep | ||
| CDS seq | ATGGAATCCGCAGAGGCAGAACCAACAAACAAAAGCGTCATTCAGGGAACCCATGAACTAACCGTATGCCAGACGACGGAGAGACTCGACACATGGAAGCTGAATGAGCAGCAGCAACAATTGGTCGATGCAAGCGGGCTCGGCAACCTGATACACACAGCAGGCCTAGTCATCGATCGCATCGCGCTCATGGCATTCTTCGAACTGTGGAGCAAGGAGACCAACACTGCTCAGCTCAATGGCTTTGAAATGGCACCCTCACTCAGGGACGCCGCCTACATACTGGGGATTCCGGTGACAGGCCGTGTGGTGACAACCGGAGCTGTGCTCAACAAGTCGGTCGAAGACCTCTGCTTCCAGTATCTGGGGCAAGTGCCTGATTGCAGGGACTGCAGGGGCAGCCATGTGAAGCTCTCTTGGCTGCAATCCAAGTTTAGCCGGATCCCGGAACGCCCCACCAATGATCAGACCATGTATGGCACCAGGGCATATCTCCTGTTCTTGATTGGATCAGCCTTACTTCCAGAGAGGGACAGGGGCTATGTCTCACCAAAGTATTTGCCACTTCTGTCAGACTTTGACAAGGTACAGGAATATGCTTGGGGTGCTGCTGCTCTTGCTCATCTCTACAAGGCTCTCTCCATCGCCGTGGCCCATTCTGCCAGAAAAAGGCTATTCGGTAGCGCGGCTTTGCTCATGGGCTGGATATATGAGTATATTCCGGCATTGCGCCCTGACATGTATGATCCTCCAGAACACATCTTCCCACGAGTACTCAAGTGGACAGGGAGCACGATCTCTCAACCGGCCAAGAACGTTTCAGACATCAGGAAAGCCTTCGGCCTGCTTCAAGTTTCTGATGTCAACTGGGAGCCCTACAAGGGCGTTGATCCTGCATCCATTCCGAAGCATTGCGCTGCTCCGGATAACCTCTGCTTCTCCAGAACATGGCTGGTCAGCTTCAACCTCAAGGAAATCTACGCCCCGGACCGGTTCGCTCGCCAGTTTGGGCAAGAACAGCATCGCCCGCTCAACGATGTCCCCGCGTTCCAGCGGCAGCTGTGGAACCCGGCAGTGGACTGGAGCCTGATGTACGCTTCAGAGATCGAACGGTTCCAGCAGCTGATCAACGCTGCAGATGGTGGTGATCATGGTCATACAGCAGATGCCGCCGCCGCCGCCGCCGCAGATGTTTTCACTCCGGCGACCATGGCGCGAGCTTCCCTTGGGCTCAGCCTGATATCCGTGGTGGAGGGCGTCAGGGAGGAGCTCCCGACCGTCGCGCGGTTTCTGGAGCAACACCGCCTCCCCGCCGAGCTGGCGACGTCCCTGTCCAGGATCCGCGGTCTCATCGAGGCCTCCCCTCCTGCTCCGCCGCTTAAGCGAGGCGACGCCGCGCCACAGCCCCAGCCCCAGGTGATCGCGGTGATCCCTCCCCTGGCTGTGATGCCACCGCGCGAGCAGGAAGCGCCGCATGGCACGGGGGACGCGGAGGCTCCGGGGATCGTGCGCGGCGACGCCGACGACGACGACGCCGTGCCGCCGAAGGAGCGGTCTGATGAGCAGCAGCAGCAGGATGAGGAGGAGGAGGAGGAGGAGGAGCAGAAGTGGCGGCGGCGGCGGCGGCGGGAGGAGGAGGACGGGGCGGCGAAGGGATCAGGCGGCGGCGGCGGCGCGGTGCGGCGGAGCAGCCGGAGCTGCGTGCAGGCGAAGAGGTTCAGGCGCGTGGGAGGGAAGGGCTCGCAGTCGTCCGACCCCATCGTGCTGTGA
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| Protein seq | MESAEAEPTNKSVIQGTHELTVCQTTERLDTWKLNEQQQQLVDASGLGNLIHTAGLVIDRIALMAFFELWSKETNTAQLNGFEMAPSLRDAAYILGIPVTGRVVTTGAVLNKSVEDLCFQYLGQVPDCRDCRGSHVKLSWLQSKFSRIPERPTNDQTMYGTRAYLLFLIGSALLPERDRGYVSPKYLPLLSDFDKVQEYAWGAAALAHLYKALSIAVAHSARKRLFGSAALLMGWIYEYIPALRPDMYDPPEHIFPRVLKWTGSTISQPAKNVSDIRKAFGLLQVSDVNWEPYKGVDPASIPKHCAAPDNLCFSRTWLVSFNLKEIYAPDRFARQFGQEQHRPLNDVPAFQRQLWNPAVDWSLMYASEIERFQQLINAADGGDHGHTADAAAAAAADVFTPATMARASLGLSLISVVEGVREELPTVARFLEQHRLPAELATSLSRIRGLIEASPPAPPLKRGDAAPQPQPQVIAVIPPLAVMPPREQEAPHGTGDAEAPGIVRGDADDDDAVPPKERSDEQQQQDEEEEEEEEQKWRRRRRREEEDGAAKGSGGGGGAVRRSSRSCVQAKRFRRVGGKGSQSSDPIVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0507500 | RBH | 0.0 | 0.000000 | 6.444057 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g32406 | RBH | 0.0 | 0.000000 | 1.616607 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0507600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0016200 | SBH | 0.568962 | 15.148108 | 11.617049 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0016130 | SBH | 0.074646 | 1.348673 | 5.149772 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0016090 | SBH | 1.974337 | 7.245595 | 11.737261 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0016020 | SBH | 0.218829 | 0.233555 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0016080 | SBH | 11.486756 | 20.469303 | 25.967119 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0318700 | SBH | 3.738677 | 8.163008 | 30.314578 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0016550 | SBH | 0.569439 | 0.421750 | 2.166123 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0331700 | SBH | 3.203324 | 9.8037675 | 13.3855135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0015820 | SBH | 0.085313 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015990 | SBH | 0.553199 | 7.594720 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0015990 | SBH | 3.072622 | 26.161661 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0016250 | SBH | 1.366498 | 1.051925 | 1.592369 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0016020 | RBH | 0.171771 | 5.009169 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015990 | SBH | 0.422281 | 1.907926 | 3.911884 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0015920 | SBH | 1.222196 | 8.000648 | 8.782990 |
