Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0447000 | OGI:07042720 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:15297784-15300052 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCAACACATGACCGAAAACTTAACACCACAAGCCAAACAAACGAAGCTTGTTGGATCAAGCTGAAGAAAGGAAAACTGAAAAGTTTCCAGCACCTTATGAATAGAGGTTCCCAGCCCTGTAGAACAACGGTTCCTTCACATCCCTCAGAAAAGGCACCCCGAGCATAAACAGGAGCATCTTGACATGCGTGACGAACTCCCCACCTGTCGTCAGCTGCTTGGCGTGGAACCCAGCCCCGCAGTTGTATGAAATGTGGCAAAGCATCTCCATCCACACCGCAGCAATGAGCTCCCATCGATCGCCGGGTTCTTCAAGCACAAGCAAGTCCGACGATACCCGGCGAGCTCGATCGAGCACAGGGTAATAGTTATCAGCGAAGAAGGAGCTGTCCTCATTGCGAATCTCCTCAATCACCTTCCTCCGGTCACATCCAGATTCACCCTTCTCCCGCAGCCAGCTTAACACCTCATGGCGGCCCTTCCTGAGCACGAAATGTCCTTCGCTGCCAGCCATGACGCCGCAATCTGCAATTAGGTACATGGTGTACTCCGACAGGTCTCTGATAGGGCCTCTCAGCTCAGCACCGCCATCTTCATCCTCATCGACAAGCAAACATATGTCTGTGATGATGTGCCAAAGAAGGACGCTCGACACAAATTCCAGGCCTTGGATGTTACTAACCTGAAGCACTTGCTGAGCTGCGCTACGGAGATGGTCTTCCTTCGCTTCAACAACCCACTGAGCCCATTGGCCACGAAACTTGCCGACACCAAGGTCCCATTCCAGCACGCGCGAAGTGGATGCTATCTCCAACAGTTTGTCAAGGACCAGCTTCTTGACCTCAGGAGAGACACCGATATGCTTGATGGCCTTGCTGTCATCGATGCCGATGTAGCGCCTCGCCCGTCGTAGCAGGCCAGCGCCTGCCTGTTTCTCCTGGATGCATCCCTCAATCATGTTGTACTGAGCCAGCTTTCCTGACCACTCCCCTCGGCTGTCAGGGTGGAGATGCCTGACCAAGCTGAGCAATGCTGCAATTACACCAGGGAATTTTTGGCACAGTGGGCATGCTAGGGGAAGAGTGATGATCGTCTTGTATGCCCAGCATGATGAGATGAATGACATGAGGACAGAGCATATCTCCAGAACAATGGCACCAACAAGCAGTATGTAAGATATGATAACATCAACTACATCATGTGCCTTTTGTCCAGCTCTGGCCCTCATGAACAACGCGAGCGCCACCGAGATTAGAGCAATTTTGATGATCAAGTGGAAGACATTACAAACTGGGACGATGTGGAAATGGCGCGTCCCAAACTTGGTGTACAAGTAGTCATAAATCAGGGAGAGATTGATCTCGGCCAGCTTGTATGCCATGTGGACAATATCCTCTGAAGATTTAAAAACCTCCACACTATTTTTGATCTCACTGATATCCTCCGGAAGCAGAGAAATTGAAGGTGTCATATCCATGAAAAAGCCCAGGCTTAGTCTGAAGCCCTCATTTGCTACAGCCAGGATGAACTCGAAATTTCTCTCCAGCTTCCTTTCAATAACATAGCACAGCTGACTATAATACCCCTGTGTGTCCCAGACGGCGTTGCTGGAGGCACGAGAAACAAGATTTGCAGTGGAGCTACTCGTTCCAGGTGCCACAGAGCCAGCTCTCCTGAGCGCCCAAATTCTCTCGGCGTACTTAGCTGTCCCAAAGACAAACACAAGCACCATGGGAGCCACGAGCCGGCTGTCTCCTCGCAGTTGCTTGCTGACAACGTAGATAGCCGTCGCCATCTGGGTGGCGAGGCTCAGCAGGTGGCGCTTCCAGAGCGTGTTGTCCTCCATGGAGAAGGCCGTCATGGTCTCTTGCCCACCGAGGTGGAGCAGCAGGAAGGGTGCCCAGAAGAGGACTAGCTGCTGCTGGTTCCGTGGGTCAGAGGAGCCACTGGCGCGTAGCGAGAGGCGGCCGAGGACATAAACCGCGACAGGGTCAGCTGAGAGGTAGGCAAGCCACAACAGCACACTGAGCACACGGGAGCTGTGGCGCTTGCGGAAGCCAGAGGAGAACAAGAGGAAGATTTGCAAGGAGAAGCTCGCCAGCAGCATGCACTGCAGCTCCCACTTGTTGATGAATTGTTGGGCCCGTGATAGTGAGCTGATGTAGTGTACCGGTAATTTAAAGGATTGAAAGAAAAAATAAGAGTAAGAATGATTGCATATATGTTCTGTATGATTTGATACTTCCTTTGTCCCTAAATGTAAGGGATT
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| CDS seq | AATCCCTTACATTTAGGGACAAAGGAAGTATCAAATCATACAGAACATATATGCAATCATTCTTACTCTTATTTTTTCTTTCAATCCTTTAAATTACCGGTACACTACATCAGCTCACTATCACGGGCCCAACAATTCATCAACAAGTGGGAGCTGCAGTGCATGCTGCTGGCGAGCTTCTCCTTGCAAATCTTCCTCTTGTTCTCCTCTGGCTTCCGCAAGCGCCACAGCTCCCGTGTGCTCAGTGTGCTGTTGTGGCTTGCCTACCTCTCAGCTGACCCTGTCGCGGTTTATGTCCTCGGCCGCCTCTCGCTACGCGCCAGTGGCTCCTCTGACCCACGGAACCAGCAGCAGCTAGTCCTCTTCTGGGCACCCTTCCTGCTGCTCCACCTCGGTGGGCAAGAGACCATGACGGCCTTCTCCATGGAGGACAACACGCTCTGGAAGCGCCACCTGCTGAGCCTCGCCACCCAGATGGCGACGGCTATCTACGTTGTCAGCAAGCAACTGCGAGGAGACAGCCGGCTCGTGGCTCCCATGGTGCTTGTGTTTGTCTTTGGGACAGCTAAGTACGCCGAGAGAATTTGGGCGCTCAGGAGAGCTGGCTCTGTGGCACCTGGAACGAGTAGCTCCACTGCAAATCTTGTTTCTCGTGCCTCCAGCAACGCCGTCTGGGACACACAGGGGTATTATAGTCAGCTGTGCTATGTTATTGAAAGGAAGCTGGAGAGAAATTTCGAGTTCATCCTGGCTGTAGCAAATGAGGGCTTCAGACTAAGCCTGGGCTTTTTCATGGATATGACACCTTCAATTTCTCTGCTTCCGGAGGATATCAGTGAGATCAAAAATAGTGTGGAGGTTTTTAAATCTTCAGAGGATATTGTCCACATGGCATACAAGCTGGCCGAGATCAATCTCTCCCTGATTTATGACTACTTGTACACCAAGTTTGGGACGCGCCATTTCCACATCGTCCCAGTTTGTAATGTCTTCCACTTGATCATCAAAATTGCTCTAATCTCGGTGGCGCTCGCGTTGTTCATGAGGGCCAGAGCTGGACAAAAGGCACATGATGTAGTTGATGTTATCATATCTTACATACTGCTTGTTGGTGCCATTGTTCTGGAGATATGCTCTGTCCTCATGTCATTCATCTCATCATGCTGGGCATACAAGACGATCATCACTCTTCCCCTAGCATGCCCACTGTGCCAAAAATTCCCTGGTGTAATTGCAGCATTGCTCAGCTTGGTCAGGCATCTCCACCCTGACAGCCGAGGGGAGTGGTCAGGAAAGCTGGCTCAGTACAACATGATTGAGGGATGCATCCAGGAGAAACAGGCAGGCGCTGGCCTGCTACGACGGGCGAGGCGCTACATCGGCATCGATGACAGCAAGGCCATCAAGCATATCGGTGTCTCTCCTGAGGTCAAGAAGCTGGTCCTTGACAAACTGTTGGAGATAGCATCCACTTCGCGCGTGCTGGAATGGGACCTTGGTGTCGGCAAGTTTCGTGGCCAATGGGCTCAGTGGGTTGTTGAAGCGAAGGAAGACCATCTCCGTAGCGCAGCTCAGCAAGTGCTTCAGGTTAGTAACATCCAAGGCCTGGAATTTGTGTCGAGCGTCCTTCTTTGGCACATCATCACAGACATATGTTTGCTTGTCGATGAGGATGAAGATGGCGGTGCTGAGCTGAGAGGCCCTATCAGAGACCTGTCGGAGTACACCATGTACCTAATTGCAGATTGCGGCGTCATGGCTGGCAGCGAAGGACATTTCGTGCTCAGGAAGGGCCGCCATGAGGTGTTAAGCTGGCTGCGGGAGAAGGGTGAATCTGGATGTGACCGGAGGAAGGTGATTGAGGAGATTCGCAATGAGGACAGCTCCTTCTTCGCTGATAACTATTACCCTGTGCTCGATCGAGCTCGCCGGGTATCGTCGGACTTGCTTGTGCTTGAAGAACCCGGCGATCGATGGGAGCTCATTGCTGCGGTGTGGATGGAGATGCTTTGCCACATTTCATACAACTGCGGGGCTGGGTTCCACGCCAAGCAGCTGACGACAGGTGGGGAGTTCGTCACGCATGTCAAGATGCTCCTGTTTATGCTCGGGGTGCCTTTTCTGAGGGATGTGAAGGAACCGTTGTTCTACAGGGCTGGGAACCTCTATTCATAA
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| Protein seq | NPLHLGTKEVSNHTEHICNHSYSYFFFQSFKLPVHYISSLSRAQQFINKWELQCMLLASFSLQIFLLFSSGFRKRHSSRVLSVLLWLAYLSADPVAVYVLGRLSLRASGSSDPRNQQQLVLFWAPFLLLHLGGQETMTAFSMEDNTLWKRHLLSLATQMATAIYVVSKQLRGDSRLVAPMVLVFVFGTAKYAERIWALRRAGSVAPGTSSSTANLVSRASSNAVWDTQGYYSQLCYVIERKLERNFEFILAVANEGFRLSLGFFMDMTPSISLLPEDISEIKNSVEVFKSSEDIVHMAYKLAEINLSLIYDYLYTKFGTRHFHIVPVCNVFHLIIKIALISVALALFMRARAGQKAHDVVDVIISYILLVGAIVLEICSVLMSFISSCWAYKTIITLPLACPLCQKFPGVIAALLSLVRHLHPDSRGEWSGKLAQYNMIEGCIQEKQAGAGLLRRARRYIGIDDSKAIKHIGVSPEVKKLVLDKLLEIASTSRVLEWDLGVGKFRGQWAQWVVEAKEDHLRSAAQQVLQVSNIQGLEFVSSVLLWHIITDICLLVDEDEDGGAELRGPIRDLSEYTMYLIADCGVMAGSEGHFVLRKGRHEVLSWLREKGESGCDRRKVIEEIRNEDSSFFADNYYPVLDRARRVSSDLLVLEEPGDRWELIAAVWMEMLCHISYNCGAGFHAKQLTTGGEFVTHVKMLLFMLGVPFLRDVKEPLFYRAGNLYS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0447000 | Os07t0447000-00 | Chr07 | 15297784 | 15300052 | - | irgsp1_rep | ||
| CDS seq | AATCCCTTACATTTAGGGACAAAGGAAGTATCAAATCATACAGAACATATATGCAATCATTCTTACTCTTATTTTTTCTTTCAATCCTTTAAATTACCGGTACACTACATCAGCTCACTATCACGGGCCCAACAATTCATCAACAAGTGGGAGCTGCAGTGCATGCTGCTGGCGAGCTTCTCCTTGCAAATCTTCCTCTTGTTCTCCTCTGGCTTCCGCAAGCGCCACAGCTCCCGTGTGCTCAGTGTGCTGTTGTGGCTTGCCTACCTCTCAGCTGACCCTGTCGCGGTTTATGTCCTCGGCCGCCTCTCGCTACGCGCCAGTGGCTCCTCTGACCCACGGAACCAGCAGCAGCTAGTCCTCTTCTGGGCACCCTTCCTGCTGCTCCACCTCGGTGGGCAAGAGACCATGACGGCCTTCTCCATGGAGGACAACACGCTCTGGAAGCGCCACCTGCTGAGCCTCGCCACCCAGATGGCGACGGCTATCTACGTTGTCAGCAAGCAACTGCGAGGAGACAGCCGGCTCGTGGCTCCCATGGTGCTTGTGTTTGTCTTTGGGACAGCTAAGTACGCCGAGAGAATTTGGGCGCTCAGGAGAGCTGGCTCTGTGGCACCTGGAACGAGTAGCTCCACTGCAAATCTTGTTTCTCGTGCCTCCAGCAACGCCGTCTGGGACACACAGGGGTATTATAGTCAGCTGTGCTATGTTATTGAAAGGAAGCTGGAGAGAAATTTCGAGTTCATCCTGGCTGTAGCAAATGAGGGCTTCAGACTAAGCCTGGGCTTTTTCATGGATATGACACCTTCAATTTCTCTGCTTCCGGAGGATATCAGTGAGATCAAAAATAGTGTGGAGGTTTTTAAATCTTCAGAGGATATTGTCCACATGGCATACAAGCTGGCCGAGATCAATCTCTCCCTGATTTATGACTACTTGTACACCAAGTTTGGGACGCGCCATTTCCACATCGTCCCAGTTTGTAATGTCTTCCACTTGATCATCAAAATTGCTCTAATCTCGGTGGCGCTCGCGTTGTTCATGAGGGCCAGAGCTGGACAAAAGGCACATGATGTAGTTGATGTTATCATATCTTACATACTGCTTGTTGGTGCCATTGTTCTGGAGATATGCTCTGTCCTCATGTCATTCATCTCATCATGCTGGGCATACAAGACGATCATCACTCTTCCCCTAGCATGCCCACTGTGCCAAAAATTCCCTGGTGTAATTGCAGCATTGCTCAGCTTGGTCAGGCATCTCCACCCTGACAGCCGAGGGGAGTGGTCAGGAAAGCTGGCTCAGTACAACATGATTGAGGGATGCATCCAGGAGAAACAGGCAGGCGCTGGCCTGCTACGACGGGCGAGGCGCTACATCGGCATCGATGACAGCAAGGCCATCAAGCATATCGGTGTCTCTCCTGAGGTCAAGAAGCTGGTCCTTGACAAACTGTTGGAGATAGCATCCACTTCGCGCGTGCTGGAATGGGACCTTGGTGTCGGCAAGTTTCGTGGCCAATGGGCTCAGTGGGTTGTTGAAGCGAAGGAAGACCATCTCCGTAGCGCAGCTCAGCAAGTGCTTCAGGTTAGTAACATCCAAGGCCTGGAATTTGTGTCGAGCGTCCTTCTTTGGCACATCATCACAGACATATGTTTGCTTGTCGATGAGGATGAAGATGGCGGTGCTGAGCTGAGAGGCCCTATCAGAGACCTGTCGGAGTACACCATGTACCTAATTGCAGATTGCGGCGTCATGGCTGGCAGCGAAGGACATTTCGTGCTCAGGAAGGGCCGCCATGAGGTGTTAAGCTGGCTGCGGGAGAAGGGTGAATCTGGATGTGACCGGAGGAAGGTGATTGAGGAGATTCGCAATGAGGACAGCTCCTTCTTCGCTGATAACTATTACCCTGTGCTCGATCGAGCTCGCCGGGTATCGTCGGACTTGCTTGTGCTTGAAGAACCCGGCGATCGATGGGAGCTCATTGCTGCGGTGTGGATGGAGATGCTTTGCCACATTTCATACAACTGCGGGGCTGGGTTCCACGCCAAGCAGCTGACGACAGGTGGGGAGTTCGTCACGCATGTCAAGATGCTCCTGTTTATGCTCGGGGTGCCTTTTCTGAGGGATGTGAAGGAACCGTTGTTCTACAGGGCTGGGAACCTCTATTCATAA
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| Protein seq | NPLHLGTKEVSNHTEHICNHSYSYFFFQSFKLPVHYISSLSRAQQFINKWELQCMLLASFSLQIFLLFSSGFRKRHSSRVLSVLLWLAYLSADPVAVYVLGRLSLRASGSSDPRNQQQLVLFWAPFLLLHLGGQETMTAFSMEDNTLWKRHLLSLATQMATAIYVVSKQLRGDSRLVAPMVLVFVFGTAKYAERIWALRRAGSVAPGTSSSTANLVSRASSNAVWDTQGYYSQLCYVIERKLERNFEFILAVANEGFRLSLGFFMDMTPSISLLPEDISEIKNSVEVFKSSEDIVHMAYKLAEINLSLIYDYLYTKFGTRHFHIVPVCNVFHLIIKIALISVALALFMRARAGQKAHDVVDVIISYILLVGAIVLEICSVLMSFISSCWAYKTIITLPLACPLCQKFPGVIAALLSLVRHLHPDSRGEWSGKLAQYNMIEGCIQEKQAGAGLLRRARRYIGIDDSKAIKHIGVSPEVKKLVLDKLLEIASTSRVLEWDLGVGKFRGQWAQWVVEAKEDHLRSAAQQVLQVSNIQGLEFVSSVLLWHIITDICLLVDEDEDGGAELRGPIRDLSEYTMYLIADCGVMAGSEGHFVLRKGRHEVLSWLREKGESGCDRRKVIEEIRNEDSSFFADNYYPVLDRARRVSSDLLVLEEPGDRWELIAAVWMEMLCHISYNCGAGFHAKQLTTGGEFVTHVKMLLFMLGVPFLRDVKEPLFYRAGNLYS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0447000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g26560 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0013100 | RBH | 0.0 | 0.0 | 0.387184 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0012950 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0012920 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0012840 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0012730 | RBH | 0.0 | 4.125558 | 2.107765 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0252600 | RBH | 0.2695125 | 0.883861 | 2.0327025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0013230 | RBH | 0.013011 | 0.0 | 0.617475 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0257100 | RBH | 0.340298 | 1.4284465 | 4.0875195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0012730 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0012780 | RBH | 0.0 | 1.804680 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0012800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0013030 | RBH | 0.0 | 0.308920 | 0.149196 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0012810 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G012770 | RBH | 0.000000 | 0.0 | 0.470477 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0012610 | RBH | 0.0 | 0.0 | 1.007799 |
