Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0273900 | OGI:07029940 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:10173157-10176751 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCCTGCATTGTTGCCTACGAACTCGAAATTCCTGTCATGGCGGAGGCGGACCATGGGGGAGAGAAACCCATCGCCCACGCCCTGAGAGACGCGCTGTTCCAGTTCGTTGTCAAGTCCAGGAAGCTGGCGTCCCCCATGTTGCGGGCGTTGGGGCGCGCGTCGACGGGGCCGGTCACCGTCGGCGACGACGAGCTGGCGGCGCTCAGGTCCATGCTCCGCAGGGTCCACGCCGCGCTCCGCGACGCCGAGAGGCTGTCCGTCGCCGACCACTCCGCCCGACTCTGGCTCGCCGAGCTCGGCGACCTCGAGTACCGCGCCGAGGACGTGTTCGAGGAGCTCGAGTACGAGTGCCGCCGCGCCGCGCAGCTGGAGGACCTCAAGATCGACCTTCTTCGCGCCGTGGGGGCGGCCCCGACGACGGGGAAGCGGAAGCGGGAGGTCGCGCAACTGTTCGCCGCCGCGCCGGCCGCGCGCCTCCGCCGCAAGATAGACGACATCTGGGCGAGGTACGGGGAGATCGCGTCGGACCGGAAGAGGCTCCGGCTAAGGCCCGGCGACGGCGCGGCGAGGCGGCCGGCGGCTGGTGCGCTCGTGCCAAGCAGCTCGCTTCCCCGTGGCGAGATCCACTGCCGGGAGCGCGACCTCCAGAGGGTGACCGACCTGGTTTGCCGCTGCAAGCCCGACGGCGGTAGAAACTACGCCGTCGTGGCAATCGTCGGGATGGCCGGCGTCGGGAAGACGTCGCTGGCGCAGCACGTGTGCAGCGAGGAGGCCGTCGCGTCGCAGTTCGACCTCAATCTCTGGGCCTGGGTCTCCCAAGAGTTCGACGTCATCGGCATGACGGCCAAGATCGTCGAGGCCATCACCAGAGCACGCCCCGACTGCTCCGAGCTGAACGCGCTCCACGGAACCATGGTCGAACACCTGGCGGGCAAGAGGTGTCTGCTCGTCCTCGACGACGTCTGGGACGACAATCCCATCCACTGGGACACCATCACGGCGCCGCTGAGCTGCTGCGCGCCGGGGAGCACAGTCGTCATCACGACGAGGAGCAAGATGGTCGCCAAGATGGTTACCCCCAATGTGTACCATCTCGACTGTTTGTCCGACGAACACAGCTGGTACATGTGCCGGCGACGGGCATCACGCGGCGGCGCCACCATCGACGACGAGCTTGCCAGCATCGGCCAACAGATTGCCAAGAAATGCAGAGGCTTGCCATTGGCAGCAGAGGCAGCAGGCACAACCATGAACACCTCAGTCACTAGGGAGCACTGGAATCATGTCCTGGAGAGCAACCTGTGGGCTGACAACGATGAGGCCAAGAACAATGTCCTACCTGCACTCAAGGTGAGCTATGACCATCTACCGGCGCCATTGAAGCGCTGCTTCGCCTTCTGCTCATTGTTCCCGAAGAGCTTCGTCTTCGACAAGGACGCTCTGGTCCAGCTCTGGACCGCGCAGGGCTTCATCAAAACCCGAGGAGAATGCCGGCCTGAAGATGTCGGCGCCGGTTACTTCTATGACTTGGTAGCAAGATGCTTCTTCCAGCTTTCTCCATCTCATGGCATAGGTAAAGGAAAGTATGTCATGCATGACCTGTATCAGGAGCTTGCGCAATTTGTTTCAGGCCATGAATGTAGGATGATACATCAACTAAACCTGACTGGAGCCGACAAGACGACTCGCCATTTGTCCATCGTCCACGACGAGTCAAATTCCGACAAAGAACTATTGTTAAAATCATTTTGTAGCCCCGATCTAAGAACATTCCTTTTTCTTGCAAGAATGGAACAGGTCATCCGTGGAGAAATGCCATACAGAAGAAAGATTGTTCCCTGTGGACTGGTCACAGATTTTGAATGTCTAAGAGTTCTAGGTTTGAGCAACACTGACATTGTAGAGGTACCAAAGTCTATTGGAAGTCTAATACATCTCAGGTACCTTGGCCTGGATAACACTGGAATCCAGATGCTGCCAGAGTCAGTAGGTGCCCTCTTCCACCTGCAGACAATCAAGCTTAACCATTGCTCATCCCTCACTCAGTTGCCACAAGGCATTAAGCTCCTGCTGAACTTAAGATGCCTGGAGATTGCACATTCCAATGTACAAATGCCATCTGGGATCAGAGTACTGACTAGCCTACAGAAGCTGCCTATTTTCAAAGGATGTTCTGTTCAAGGAACCATTTTGCAGCCTTTCTGAAAATATTTGCCACCTTTCACTTGTTCTTTCAGACTCCAACGCTGTTGTGCTGACTAAAGAACTTGGACATCTGCAGGCCCTTATGGTTGTCAGGTGATCTGCATCAGAGTACTCAGGTTCGTTTATGCCGCTTTTGAAAATATTGGGTTTGGATTATTTTCTCGTCAAAACCAGATTTTTTAAGAGCACTGAATTTGAGCGGTACAACAACAGTAGAATTGACCAGTTCTATTATTGGGAGGATGAAAGACTTAAGATTCTTGGCTCTGAACAACACAAAGACAGAGAGTCTCCCAATCCCAACTGATTGTTCAGATAGGTCAGTTAAACACCCTTCAGACATTGGAACTCAAGGATTGTTGCTGCCTCATTGAGTTACCGTAAAGCACAAAGAATTTGACCAAGCTGCGACACCTTGATGTTCGAAAGAAACCAGGAAATGTTCATGTTAGAATGGCTTCTGGGCTCGGGCAACTAACTGATCTGCAAACAGTAACAGTATTTAATATTGGGGATGATTTATCACATTGTTCAATTGGGGACCTGAAGAATCTCTGTAGACTAAGGGGACATATTCATATAACAGGGCTTCAGAATATTACTGCAGGCGATGATGCCAAAGAAGCAAATCTAGTAGTAATCAATTCCTAGAAGCTTTGACACTAGAATGATGTTGCAGCAGCGAGGAATTGGAAGATGACAGTGACAAAGAAATTGTTAATCAGGTCCAAAATCTTCAGCCTAACACTAGCCTTTTTGAGCTAGCTATACAAAATTATCCTGGCAATTTATTCCCTATTTGGATTCAGGATTCTTCCCTTGGCATGCTGGTGTCAATTACGATCGATGACTGCCAAAATTGTAATGAGATCCCATATCTTGGTGATCTTCCATCTCTTAAATATCTCTTCATACAGAAAATGTATGTTGTTGAAAGCTTTGGACAAAGAAGTAACTCTTTGACTACTGATGGGAGATGTACTGAATCTTTGGGAGATATACTCTTTGCAATTCTGGAATGGAACAAGCAAGGACGATTTCCCACGGCTTCGTTGTCTCTCTGTCAGTAGATGCCCAAAACTAAGTAATTTGCAGCGACGAATGACACAGCAGCTCAGGTGTTGCAGTACCTCAGACCCAATTCAAATCTGGAGGAGCTCATCATGAAAGGTTATAATGGATCATCATTCCCATCATGGGTAGGGTCTCTACCTTTGGACAGGTTAGCTTCAATAGAACTCAAAGACTGACAAAATTGCGAAGAACTACCACCTCCTGGAAGATTCCCATCCCTGAAACATGATGTGATACAGTCACTACCAAGTGTCAAACTAGTTGGGCCTGAATTTCTTGGCAATGTTGGCGATATTAATTACTTTTTTTTTTGAC
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| CDS seq | ATGGCGGAGGCGGACCATGGGGGAGAGAAACCCATCGCCCACGCCCTGAGAGACGCGCTGTTCCAGTTCGTTGTCAAGTCCAGGAAGCTGGCGTCCCCCATGTTGCGGGCGTTGGGGCGCGCGTCGACGGGGCCGGTCACCGTCGGCGACGACGAGCTGGCGGCGCTCAGGTCCATGCTCCGCAGGGTCCACGCCGCGCTCCGCGACGCCGAGAGGCTGTCCGTCGCCGACCACTCCGCCCGACTCTGGCTCGCCGAGCTCGGCGACCTCGAGTACCGCGCCGAGGACGTGTTCGAGGAGCTCGAGTACGAGTGCCGCCGCGCCGCGCAGCTGGAGGACCTCAAGATCGACCTTCTTCGCGCCGTGGGGGCGGCCCCGACGACGGGGAAGCGGAAGCGGGAGGTCGCGCAACTGTTCGCCGCCGCGCCGGCCGCGCGCCTCCGCCGCAAGATAGACGACATCTGGGCGAGGTACGGGGAGATCGCGTCGGACCGGAAGAGGCTCCGGCTAAGGCCCGGCGACGGCGCGGCGAGGCGGCCGGCGGCTGGTGCGCTCGTGCCAAGCAGCTCGCTTCCCCGTGGCGAGATCCACTGCCGGGAGCGCGACCTCCAGAGGGTGACCGACCTGGTTTGCCGCTGCAAGCCCGACGGCGGTAGAAACTACGCCGTCGTGGCAATCGTCGGGATGGCCGGCGTCGGGAAGACGTCGCTGGCGCAGCACGTGTGCAGCGAGGAGGCCGTCGCGTCGCAGTTCGACCTCAATCTCTGGGCCTGGGTCTCCCAAGAGTTCGACGTCATCGGCATGACGGCCAAGATCGTCGAGGCCATCACCAGAGCACGCCCCGACTGCTCCGAGCTGAACGCGCTCCACGGAACCATGGTCGAACACCTGGCGGGCAAGAGGTGTCTGCTCGTCCTCGACGACGTCTGGGACGACAATCCCATCCACTGGGACACCATCACGGCGCCGCTGAGCTGCTGCGCGCCGGGGAGCACAGTCGTCATCACGACGAGGAGCAAGATGGTCGCCAAGATGGTTACCCCCAATGTGTACCATCTCGACTGTTTGTCCGACGAACACAGCTGGTACATGTGCCGGCGACGGGCATCACGCGGCGGCGCCACCATCGACGACGAGCTTGCCAGCATCGGCCAACAGATTGCCAAGAAATGCAGAGGCTTGCCATTGGCAGCAGAGGCAGCAGGCACAACCATGAACACCTCAGTCACTAGGGAGCACTGGAATCATGTCCTGGAGAGCAACCTGTGGGCTGACAACGATGAGGCCAAGAACAATGTCCTACCTGCACTCAAGGTGAGCTATGACCATCTACCGGCGCCATTGAAGCGCTGCTTCGCCTTCTGCTCATTGTTCCCGAAGAGCTTCGTCTTCGACAAGGACGCTCTGGTCCAGCTCTGGACCGCGCAGGGCTTCATCAAAACCCGAGGAGAATGCCGGCCTGAAGATGTCGGCGCCGGTTACTTCTATGACTTGGTAGCAAGATGCTTCTTCCAGCTTTCTCCATCTCATGGCATAGGTAAAGGAAAGTATGTCATGCATGACCTGTATCAGGAGCTTGCGCAATTTGTTTCAGGCCATGAATGTAGGATGATACATCAACTAAACCTGACTGGAGCCGACAAGACGACTCGCCATTTGTCCATCGTCCACGACGAGTCAAATTCCGACAAAGAACTATTGTTAAAATCATTTTGTAGCCCCGATCTAAGAACATTCCTTTTTCTTGCAAGAATGGAACAGGTCATCCGTGGAGAAATGCCATACAGAAGAAAGATTGTTCCCTGTGGACTGGTCACAGATTTTGAATGTCTAAGAGTTCTAGGTTTGAGCAACACTGACATTGTAGAGGTACCAAAGTCTATTGGAAGTCTAATACATCTCAGGTACCTTGGCCTGGATAACACTGGAATCCAGATGCTGCCAGAGTCAGTAGGTGCCCTCTTCCACCTGCAGACAATCAAGCTTAACCATTGCTCATCCCTCACTCAGTTGCCACAAGGCATTAAGCTCCTGCTGAACTTAAGATGCCTGGAGATTGCACATTCCAATGTACAAATGCCATCTGGGATCAGAGTACTGACTAGCCTACAGAAGCTGCCTATTTTCAAAGGATGTTCTGTTCAAGGAACCATTTTGCAGCCTTTCTGA
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| Protein seq | MAEADHGGEKPIAHALRDALFQFVVKSRKLASPMLRALGRASTGPVTVGDDELAALRSMLRRVHAALRDAERLSVADHSARLWLAELGDLEYRAEDVFEELEYECRRAAQLEDLKIDLLRAVGAAPTTGKRKREVAQLFAAAPAARLRRKIDDIWARYGEIASDRKRLRLRPGDGAARRPAAGALVPSSSLPRGEIHCRERDLQRVTDLVCRCKPDGGRNYAVVAIVGMAGVGKTSLAQHVCSEEAVASQFDLNLWAWVSQEFDVIGMTAKIVEAITRARPDCSELNALHGTMVEHLAGKRCLLVLDDVWDDNPIHWDTITAPLSCCAPGSTVVITTRSKMVAKMVTPNVYHLDCLSDEHSWYMCRRRASRGGATIDDELASIGQQIAKKCRGLPLAAEAAGTTMNTSVTREHWNHVLESNLWADNDEAKNNVLPALKVSYDHLPAPLKRCFAFCSLFPKSFVFDKDALVQLWTAQGFIKTRGECRPEDVGAGYFYDLVARCFFQLSPSHGIGKGKYVMHDLYQELAQFVSGHECRMIHQLNLTGADKTTRHLSIVHDESNSDKELLLKSFCSPDLRTFLFLARMEQVIRGEMPYRRKIVPCGLVTDFECLRVLGLSNTDIVEVPKSIGSLIHLRYLGLDNTGIQMLPESVGALFHLQTIKLNHCSSLTQLPQGIKLLLNLRCLEIAHSNVQMPSGIRVLTSLQKLPIFKGCSVQGTILQPF |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0273900 | Os07t0273900-01 | Chr07 | 10173157 | 10176751 | + | irgsp1_rep | ||
| CDS seq | ATGGCGGAGGCGGACCATGGGGGAGAGAAACCCATCGCCCACGCCCTGAGAGACGCGCTGTTCCAGTTCGTTGTCAAGTCCAGGAAGCTGGCGTCCCCCATGTTGCGGGCGTTGGGGCGCGCGTCGACGGGGCCGGTCACCGTCGGCGACGACGAGCTGGCGGCGCTCAGGTCCATGCTCCGCAGGGTCCACGCCGCGCTCCGCGACGCCGAGAGGCTGTCCGTCGCCGACCACTCCGCCCGACTCTGGCTCGCCGAGCTCGGCGACCTCGAGTACCGCGCCGAGGACGTGTTCGAGGAGCTCGAGTACGAGTGCCGCCGCGCCGCGCAGCTGGAGGACCTCAAGATCGACCTTCTTCGCGCCGTGGGGGCGGCCCCGACGACGGGGAAGCGGAAGCGGGAGGTCGCGCAACTGTTCGCCGCCGCGCCGGCCGCGCGCCTCCGCCGCAAGATAGACGACATCTGGGCGAGGTACGGGGAGATCGCGTCGGACCGGAAGAGGCTCCGGCTAAGGCCCGGCGACGGCGCGGCGAGGCGGCCGGCGGCTGGTGCGCTCGTGCCAAGCAGCTCGCTTCCCCGTGGCGAGATCCACTGCCGGGAGCGCGACCTCCAGAGGGTGACCGACCTGGTTTGCCGCTGCAAGCCCGACGGCGGTAGAAACTACGCCGTCGTGGCAATCGTCGGGATGGCCGGCGTCGGGAAGACGTCGCTGGCGCAGCACGTGTGCAGCGAGGAGGCCGTCGCGTCGCAGTTCGACCTCAATCTCTGGGCCTGGGTCTCCCAAGAGTTCGACGTCATCGGCATGACGGCCAAGATCGTCGAGGCCATCACCAGAGCACGCCCCGACTGCTCCGAGCTGAACGCGCTCCACGGAACCATGGTCGAACACCTGGCGGGCAAGAGGTGTCTGCTCGTCCTCGACGACGTCTGGGACGACAATCCCATCCACTGGGACACCATCACGGCGCCGCTGAGCTGCTGCGCGCCGGGGAGCACAGTCGTCATCACGACGAGGAGCAAGATGGTCGCCAAGATGGTTACCCCCAATGTGTACCATCTCGACTGTTTGTCCGACGAACACAGCTGGTACATGTGCCGGCGACGGGCATCACGCGGCGGCGCCACCATCGACGACGAGCTTGCCAGCATCGGCCAACAGATTGCCAAGAAATGCAGAGGCTTGCCATTGGCAGCAGAGGCAGCAGGCACAACCATGAACACCTCAGTCACTAGGGAGCACTGGAATCATGTCCTGGAGAGCAACCTGTGGGCTGACAACGATGAGGCCAAGAACAATGTCCTACCTGCACTCAAGGTGAGCTATGACCATCTACCGGCGCCATTGAAGCGCTGCTTCGCCTTCTGCTCATTGTTCCCGAAGAGCTTCGTCTTCGACAAGGACGCTCTGGTCCAGCTCTGGACCGCGCAGGGCTTCATCAAAACCCGAGGAGAATGCCGGCCTGAAGATGTCGGCGCCGGTTACTTCTATGACTTGGTAGCAAGATGCTTCTTCCAGCTTTCTCCATCTCATGGCATAGGTAAAGGAAAGTATGTCATGCATGACCTGTATCAGGAGCTTGCGCAATTTGTTTCAGGCCATGAATGTAGGATGATACATCAACTAAACCTGACTGGAGCCGACAAGACGACTCGCCATTTGTCCATCGTCCACGACGAGTCAAATTCCGACAAAGAACTATTGTTAAAATCATTTTGTAGCCCCGATCTAAGAACATTCCTTTTTCTTGCAAGAATGGAACAGGTCATCCGTGGAGAAATGCCATACAGAAGAAAGATTGTTCCCTGTGGACTGGTCACAGATTTTGAATGTCTAAGAGTTCTAGGTTTGAGCAACACTGACATTGTAGAGGTACCAAAGTCTATTGGAAGTCTAATACATCTCAGGTACCTTGGCCTGGATAACACTGGAATCCAGATGCTGCCAGAGTCAGTAGGTGCCCTCTTCCACCTGCAGACAATCAAGCTTAACCATTGCTCATCCCTCACTCAGTTGCCACAAGGCATTAAGCTCCTGCTGAACTTAAGATGCCTGGAGATTGCACATTCCAATGTACAAATGCCATCTGGGATCAGAGTACTGACTAGCCTACAGAAGCTGCCTATTTTCAAAGGATGTTCTGTTCAAGGAACCATTTTGCAGCCTTTCTGA
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| Protein seq | MAEADHGGEKPIAHALRDALFQFVVKSRKLASPMLRALGRASTGPVTVGDDELAALRSMLRRVHAALRDAERLSVADHSARLWLAELGDLEYRAEDVFEELEYECRRAAQLEDLKIDLLRAVGAAPTTGKRKREVAQLFAAAPAARLRRKIDDIWARYGEIASDRKRLRLRPGDGAARRPAAGALVPSSSLPRGEIHCRERDLQRVTDLVCRCKPDGGRNYAVVAIVGMAGVGKTSLAQHVCSEEAVASQFDLNLWAWVSQEFDVIGMTAKIVEAITRARPDCSELNALHGTMVEHLAGKRCLLVLDDVWDDNPIHWDTITAPLSCCAPGSTVVITTRSKMVAKMVTPNVYHLDCLSDEHSWYMCRRRASRGGATIDDELASIGQQIAKKCRGLPLAAEAAGTTMNTSVTREHWNHVLESNLWADNDEAKNNVLPALKVSYDHLPAPLKRCFAFCSLFPKSFVFDKDALVQLWTAQGFIKTRGECRPEDVGAGYFYDLVARCFFQLSPSHGIGKGKYVMHDLYQELAQFVSGHECRMIHQLNLTGADKTTRHLSIVHDESNSDKELLLKSFCSPDLRTFLFLARMEQVIRGEMPYRRKIVPCGLVTDFECLRVLGLSNTDIVEVPKSIGSLIHLRYLGLDNTGIQMLPESVGALFHLQTIKLNHCSSLTQLPQGIKLLLNLRCLEIAHSNVQMPSGIRVLTSLQKLPIFKGCSVQGTILQPF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0273900 | RBH | 2.922584 | 1.821040 | 2.912563 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g17250 | RBH | 1.931685 | 1.190258 | 0.735582 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0273600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010100 | RBH | 0.239268 | 8.428787 | 0.922209 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0010220 | RBH | 0.174742 | 2.726941 | 3.091355 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010030 | RBH | 1.987395 | 6.722004 | 4.820598 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009820 | RBH | 0.131406 | 0.107880 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010220 | RBH | 5.486380 | 1.592026 | 7.105233 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0183900 | RBH | 3.830701 | 9.078669 | 1.4626215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010670 | RBH | 0.307827 | 0.295310 | 0.627854 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0180600 | RBH | 4.7964225 | 11.613409 | 2.9463955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010150 | RBH | 0.329840 | 0.219817 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010210 | RBH | 0.565827 | 7.199344 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010150 | RBH | 9.760432 | 14.488188 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0010150 | RBH | 0.000000 | 0.165833 | 0.041616 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0010040 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010010 | RBH | 0.677805 | 2.455071 | 1.597943 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0009810 | RBH | 0.000000 | 13.573050 | 1.115876 |
