Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
Os07g0242400 | OGI:07023120 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:7938936-7941316 | ||||||||
Gene Symbol | OsFbox356, Os_F0118 | ||||||||||
DNA seq | GAACCGAAAACATTTTTTTGGAACCGATATCATTATGATCCGTCTTTGAAAGAAAGCCAACACGGGGACAGGGATTTCTTTAGAGATTCACAAACAATAATTAAAAGCAGCATACTGTGGATTCCAGTTTTAGGTAGAAAATACCATGGAACAACCCACAGGTCCAAAAACTATTCACTAGCTGCATAACTGAACCATCTGCAGAACCAAGAAAAATAACACCCCAGTAGCTTGCACGACAGTAGCCTGTCCAAGAGTGTTATAGTTTTCAGGAGCGGCCTCAAATTCTCCAGTATGCAATCACACCAGTCCTGACATCGGTTTTGCTCCTCTTCTTTTGGCACTTCTTCCATTTCTGCAGGAAGAAAATTATTTTGTACAACGCATTCAGGAGAGATTTGGCAATTAACTTCATTGAACACAAAAACATAACCACAATAACCAGCAAACAGTTTGCTAAAATAGTAGGCCGAAAATTACTATGGTTCTTATTCCATTTCAAATGCAAAATTTACTATGAAAAAAACTTGATAGAACTATTATGCACCTTTATATTCAAATGCAAATCCACACAAAAGGCCCTCCCATTATTTTTTTTATCAACATGTCGAGAAGATATGTGCTCATTCAAATTAAAAAGACCCTCCTTAAACACCAAGTTTAGCAAGAATTGCCAATTGCCAGCAATGCAAAATTACCAATTTACAATACATCTAAATTAATAGAGTATATGATTTTAAGTGTTTGAGTAACGATTGAAGTCCTTATATTCCTGAAACAAATAATCAAACTATATAGGCCCATTTCCTAATTTCAGTTGGATATCATCTTATTTCGATGAGCATATGGAAGCTTTTAGCATAAAAGATACAAGTAGAAGATGAATTTGCAATGAAATTTGTAGAACTGCATTTGTGACAGATAAGTAAATGACAAAATGATGCTGTTTATCAAATCACGGCATGAATACCAATTATGTGATGATACGAAACCAAACTTTACCTTGTCACATACTCTGTGGACATAATTGATTTCCAGTATATACACCTACTCCAGTAAAGATACTAGCCTTTGTCTGAACTATCTCTGAGGAAGTGTTGGTTACTGGATTATAAATCCAGACCATCCCTTTTGATCCTATCTGCACCCAAAGTACCACATTTCCCTCATCCGTCACAAGCAAAGGTTGCACACCATCTCCAAAACCATCAAAAGCAAATTCAACATTTATCCTATATTCTTTGGACCACATACCATTCTCAAAATCAACTAGAAACCATAAGTCCACCGCAGAAATTTGATCATTGAAATGTGCTGTACACAAAGTTCCTTCAAGTTGGGCTAACATAAGACGATCGGTAAGGTCAGCATAGTTGAGTGTGCCATTCGCTTCCTCAAGAATTCTGTTTACTGGCCCTTGGAGAGCCGTGCTCCACTGCTCCGTCGCAAGGTCGAAGGAAGGTATGCAGCCCGTAGCAAAATAGTAGGAGGGATCCATTTGCCAGTGATCCAAGAAGAAGTAAGCAGCCCCTTCGAAGACAACTCCATTGGTGCAGCTCGGATCAAGATACCCCGGTGGACTCTCCATCTTCCTCCACCGTCCATTCATGTCGCCGATTGCGAAAACCTCACACACTGGATCAGCCTCATATCCATCCTCCAAGTCCTCTAGAATCCGGAGTAGTTTGTACTCTCCTGTGGAATTCGTCTGACCAAATGCAAACCAGGCTGGCCTCATCCCGTTGCGACGCACCATATCCTCTGCAATGCCGAAGGGCAAGGCGGAGACGGATCCTGTGGCGGGGTCGAGCACGCTGACGCGGTGGTGCTCCCCGGCGACGAGGACACGGTCGTAGCTCGCCGTCAGCACCCTGCACTCGCCGCCCACGCCGAGGATCTCCTCGACGACGTTGCCGGACAGGTCCACGAGATCAACGCAGCATCGACTGGGGAAGCTGTCAACCAAGACGGCGAGGAGCGGGTGAGGGTGGACGGCGGCGTAGGCGGCGAGGAAGAGCCGGTCCGTGGTGAAGGACAGCCACGAGCGGCAGACGGCGCGGAGGCGGCAGATCGGCTTGGCGGGGAGGCGCAGCAGGACCTCGAGCAGCAGCTCCGGGGGCAGGACGCCGTCCACGGCTCCGAACCCGCTTCCCGGTGCGGCGGCGGCGGCGCACGGCTCTGGGGACGCCATCGCGGACGCCTGGATTGGGGGTCAAAACCGGATGAAAACTTGAACCAATCAGTGCGAGAAGAAGGACGAGTTCTCTGCCATCAAGGAGAAGGGTTTACCTCGAGCGGAGCGCGGTGGCCAGCCGGAGTCCAGCACGGCGGCGGCGGCGGCGGCGGTGGCGCCGTCTCTCGTCTCTCGCCGGGATGTGTCT
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CDS seq | ACACATCCCGGCGAGAGACGAGAGACGGCGCCACCGCCGCCGCCGCCGCCGCCGTGCTGGACTCCGGCTGGCCACCGCGCTCCGCTCGAGGCGTCCGCGATGGCGTCCCCAGAGCCGTGCGCCGCCGCCGCCGCACCGGGAAGCGGGTTCGGAGCCGTGGACGGCGTCCTGCCCCCGGAGCTGCTGCTCGAGGTCCTGCTGCGCCTCCCCGCCAAGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTGTCCTTCACCACGGACCGGCTCTTCCTCGCCGCCTACGCCGCCGTCCACCCTCACCCGCTCCTCGCCGTCTTGGTTGACAGCTTCCCCAGTCGATGCTGCGTTGATCTCGTGGACCTGTCCGGCAACGTCGTCGAGGAGATCCTCGGCGTGGGCGGCGAGTGCAGGGTGCTGACGGCGAGCTACGACCGTGTCCTCGTCGCCGGGGAGCACCACCGCGTCAGCGTGCTCGACCCCGCCACAGGATCCGTCTCCGCCTTGCCCTTCGGCATTGCAGAGGATATGGTGCGTCGCAACGGGATGAGGCCAGCCTGGTTTGCATTTGGTCAGACGAATTCCACAGGAGAGTACAAACTACTCCGGATTCTAGAGGACTTGGAGGATGGATATGAGGCTGATCCAGTGTGTGAGGTTTTCGCAATCGGCGACATGAATGGACGGTGGAGGAAGATGGAGAGTCCACCGGGGTATCTTGATCCGAGCTGCACCAATGGAGTTGTCTTCGAAGGGGCTGCTTACTTCTTCTTGGATCACTGGCAAATGGATCCCTCCTACTATTTTGCTACGGGCTGCATACCTTCCTTCGACCTTGCGACGGAGCAGTGGAGCACGGCTCTCCAAGGGCCAGTAAACAGAATTCTTGAGGAAGCGAATGGCACACTCAACTATGCTGACCTTACCGATCGTCTTATGTTAGCCCAACTTGAAGGAACTTTGTGTACAGCACATTTCAATGATCAAATTTCTGCGGTGGACTTATGGTTTCTAGTTGATTTTGAGAATGGTATGTGGTCCAAAGAATATAGGATAAATGTTGAATTTGCTTTTGATGGTTTTGGAGATGGTGTGCAACCTTTGCTTGTGACGGATGAGGGAAATGTGGTACTTTGGGTGCAGATAGGATCAAAAGGGATGGTCTGGATTTATAATCCAGTAACCAACACTTCCTCAGAGATAGTTCAGACAAAGGCTAGTATCTTTACTGGAGTAGGTGTATATACTGGAAATCAATTATGTCCACAGAGTATGTGA
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Protein seq | THPGERRETAPPPPPPPPCWTPAGHRAPLEASAMASPEPCAAAAAPGSGFGAVDGVLPPELLLEVLLRLPAKPICRLRAVCRSWLSFTTDRLFLAAYAAVHPHPLLAVLVDSFPSRCCVDLVDLSGNVVEEILGVGGECRVLTASYDRVLVAGEHHRVSVLDPATGSVSALPFGIAEDMVRRNGMRPAWFAFGQTNSTGEYKLLRILEDLEDGYEADPVCEVFAIGDMNGRWRKMESPPGYLDPSCTNGVVFEGAAYFFLDHWQMDPSYYFATGCIPSFDLATEQWSTALQGPVNRILEEANGTLNYADLTDRLMLAQLEGTLCTAHFNDQISAVDLWFLVDFENGMWSKEYRINVEFAFDGFGDGVQPLLVTDEGNVVLWVQIGSKGMVWIYNPVTNTSSEIVQTKASIFTGVGVYTGNQLCPQSM |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
Os07g0242400 | Os07t0242400-01 | Chr07 | 7938936 | 7941316 | - | irgsp1_rep | ||
CDS seq | ACACATCCCGGCGAGAGACGAGAGACGGCGCCACCGCCGCCGCCGCCGCCGCCGTGCTGGACTCCGGCTGGCCACCGCGCTCCGCTCGAGGCGTCCGCGATGGCGTCCCCAGAGCCGTGCGCCGCCGCCGCCGCACCGGGAAGCGGGTTCGGAGCCGTGGACGGCGTCCTGCCCCCGGAGCTGCTGCTCGAGGTCCTGCTGCGCCTCCCCGCCAAGCCGATCTGCCGCCTCCGCGCCGTCTGCCGCTCGTGGCTGTCCTTCACCACGGACCGGCTCTTCCTCGCCGCCTACGCCGCCGTCCACCCTCACCCGCTCCTCGCCGTCTTGGTTGACAGCTTCCCCAGTCGATGCTGCGTTGATCTCGTGGACCTGTCCGGCAACGTCGTCGAGGAGATCCTCGGCGTGGGCGGCGAGTGCAGGGTGCTGACGGCGAGCTACGACCGTGTCCTCGTCGCCGGGGAGCACCACCGCGTCAGCGTGCTCGACCCCGCCACAGGATCCGTCTCCGCCTTGCCCTTCGGCATTGCAGAGGATATGGTGCGTCGCAACGGGATGAGGCCAGCCTGGTTTGCATTTGGTCAGACGAATTCCACAGGAGAGTACAAACTACTCCGGATTCTAGAGGACTTGGAGGATGGATATGAGGCTGATCCAGTGTGTGAGGTTTTCGCAATCGGCGACATGAATGGACGGTGGAGGAAGATGGAGAGTCCACCGGGGTATCTTGATCCGAGCTGCACCAATGGAGTTGTCTTCGAAGGGGCTGCTTACTTCTTCTTGGATCACTGGCAAATGGATCCCTCCTACTATTTTGCTACGGGCTGCATACCTTCCTTCGACCTTGCGACGGAGCAGTGGAGCACGGCTCTCCAAGGGCCAGTAAACAGAATTCTTGAGGAAGCGAATGGCACACTCAACTATGCTGACCTTACCGATCGTCTTATGTTAGCCCAACTTGAAGGAACTTTGTGTACAGCACATTTCAATGATCAAATTTCTGCGGTGGACTTATGGTTTCTAGTTGATTTTGAGAATGGTATGTGGTCCAAAGAATATAGGATAAATGTTGAATTTGCTTTTGATGGTTTTGGAGATGGTGTGCAACCTTTGCTTGTGACGGATGAGGGAAATGTGGTACTTTGGGTGCAGATAGGATCAAAAGGGATGGTCTGGATTTATAATCCAGTAACCAACACTTCCTCAGAGATAGTTCAGACAAAGGCTAGTATCTTTACTGGAGTAGGTGTATATACTGGAAATCAATTATGTCCACAGAGTATGTGA
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Protein seq | THPGERRETAPPPPPPPPCWTPAGHRAPLEASAMASPEPCAAAAAPGSGFGAVDGVLPPELLLEVLLRLPAKPICRLRAVCRSWLSFTTDRLFLAAYAAVHPHPLLAVLVDSFPSRCCVDLVDLSGNVVEEILGVGGECRVLTASYDRVLVAGEHHRVSVLDPATGSVSALPFGIAEDMVRRNGMRPAWFAFGQTNSTGEYKLLRILEDLEDGYEADPVCEVFAIGDMNGRWRKMESPPGYLDPSCTNGVVFEGAAYFFLDHWQMDPSYYFATGCIPSFDLATEQWSTALQGPVNRILEEANGTLNYADLTDRLMLAQLEGTLCTAHFNDQISAVDLWFLVDFENGMWSKEYRINVEFAFDGFGDGVQPLLVTDEGNVVLWVQIGSKGMVWIYNPVTNTSSEIVQTKASIFTGVGVYTGNQLCPQSM
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | None | None | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0242400 | RBH | 0.0 | 0.0 | 0.721889 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g13870 | RBH | 0.0 | 0.0 | 0.185602 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0008610 | RBH | 0.000000 | 1.257977 | 0.912091 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008720 | RBH | 0.0 | 1.936625 | 0.386717 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0008550 | RBH | 0.0 | 1.741357 | 1.194350 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0008350 | RBH | 0.0 | 0.064984 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0008490 | RBH | 0.912674 | 0.000000 | 12.786172 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0137500 | RBH | 0.98382 | 2.9583005 | 6.404438 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0008980 | RBH | 0.042002 | 0.209578 | 0.811103 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0139100 | RBH | 1.619566 | 4.837988 | 9.8072955 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0008450 | RBH | 0.076779 | 0.056306 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0008470 | RBH | 0.177356 | 21.922144 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0008460 | RBH | 3.995538 | 7.558509 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0008640 | RBH | 0.0 | 0.000000 | 0.317393 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0008520 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G008520 | RBH | 0.075160 | 0.999404 | 0.635161 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0008430 | RBH | 0.0 | 3.190505 | 0.727447 |