Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0236700 | OGI:07021870 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:7604107-7605638 | ||||||||
| Gene Symbol | DOF21, OsDof21, Dof21, OsDof-21, OsCDF2, CDF2 | ||||||||||
| DNA seq | AATAATAATCAAGCGGTACCATTCATCCCTAGATACAATATTTCTAGAGCTTTGCTTAACACTAACACACAGCTATATAACCTAGCTAGCTTCATGATGACTTCAATATTTCTCGACCTTACTTAATACTAACACACAGCTATAACCTAGCTATAGCTTCATGACTTGATCTACCAAGCTAGGCATGCATATGCAAGAACAAGAAACAGATTAGTCACACCATAATGACTAACTAATTATAGATTCATATCAGCTAGTAATATAGTTCTTCTAGGCCCTGATCAGATCATGCAAAATTAAATTACTTACCTAGTTTGGTTCCATGCATGCATGATACACACAACATATATAACACTCTTCTAGTTCTAGGATTCTAGATTGATTTTTCTTCTTCTTTTCCCCATGAAGCCATGCACCATCCATGCATTGACCCATTCTGCATATGCCTCATGACTTGAGTCATCACAGTATATTTCCAGACGTTGACAAGTCAAACGCCGGCAGGTCGGACCACCCGCCGCCGCCGCCGCCGGGAGCAGCACTGCCGCCGGCACCATCACCACCGCCACGGTGGCCGCCGCCGCCTCCCCAGAACTGCAAGCTTCCACGGAGACCGAGGAACTCAATCGGCGAGCTCGCCGTCGTCGTTGCCGCAGACGGTGGTGGGTGGTTGTCGATGTCGTCCATCTTCACCGAGGCCATCTGCGTGATGAGCCCGGCGGAGCCGGCGACGCTGGCGGCGTTGGCCGGCATGTCGCCGCCAAGGCCGCCCGCCGCGACGTCGCCAAATGGATACGATACCCCGGCGGCGGTGGACATCAGCGGCGGTGGATGGACTGCGGCGTTGGATCGGGCTAAGAACGGGAAGTGCGGGAGGCGCTGCCGTTCGAGCCCGAGGCCGTCGCCGCCGCCGCCGCCGCCGAGCTGGTAGTCGACGGCGGCAGCCGCGTGCAGCGAGCTGAGCTCCGGAAACCCTAACCTCGACGCGCCACCACCACCACCACCACCGATGATACTACCATGGCCACCGCCGCCGCCGCCATCAAACCCGAAAGGGAGCTGCAGCTGCGCATGCGGCGGCGCCATGACGCCGCCGGCGACGGCGGCGGCGGGCTTCTTGGAGTTAGAGGGCTTGGTTCCGCGCTTGTTGCGGCGGAAGCCGCCGCCGACGGGGACGTTGCGGAGGGCGCCGCCGCGGGTCCAGTAGCGGCGGCAAGCCTTGCAGAAGTGGCGGGGCTGGGTGAGGGAGTAGTTGTTGAAGTAGCAGAACTTGGTGTTGGTGGAGTCGCAGCGCGGACACTTGAGCCCCGGCTCCGGCTGCGGGATCTTCGCCATCCTGGCGCGCTCCGCCATCGACACCGGCCGCGCCGAGGAGGCGCCGCCGCCACCACTCACCGGAAGGATCCCGGCGGCGGCCATGTCTGGCGACCGAGGAGCAAGCAGCAAGCTGGCCGAGGTCATCGGCAGCTGATTCGCCTCCACACTTTGGTGAAGCTGATGATGGCCATGGTGAGCTTGATGCTGCTAGTAAC
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| CDS seq | CAGCATCAAGCTCACCATGGCCATCATCAGCTTCACCAAAGTGTGGAGGCGAATCAGCTGCCGATGACCTCGGCCAGCTTGCTGCTTGCTCCTCGGTCGCCAGACATGGCCGCCGCCGGGATCCTTCCGGTGAGTGGTGGCGGCGGCGCCTCCTCGGCGCGGCCGGTGTCGATGGCGGAGCGCGCCAGGATGGCGAAGATCCCGCAGCCGGAGCCGGGGCTCAAGTGTCCGCGCTGCGACTCCACCAACACCAAGTTCTGCTACTTCAACAACTACTCCCTCACCCAGCCCCGCCACTTCTGCAAGGCTTGCCGCCGCTACTGGACCCGCGGCGGCGCCCTCCGCAACGTCCCCGTCGGCGGCGGCTTCCGCCGCAACAAGCGCGGAACCAAGCCCTCTAACTCCAAGAAGCCCGCCGCCGCCGTCGCCGGCGGCGTCATGGCGCCGCCGCATGCGCAGCTGCAGCTCCCTTTCGGGTTTGATGGCGGCGGCGGCGGTGGCCATGGTAGTATCATCGGTGGTGGTGGTGGTGGTGGCGCGTCGAGGTTAGGGTTTCCGGAGCTCAGCTCGCTGCACGCGGCTGCCGCCGTCGACTACCAGCTCGGCGGCGGCGGCGGCGGCGACGGCCTCGGGCTCGAACGGCAGCGCCTCCCGCACTTCCCGTTCTTAGCCCGATCCAACGCCGCAGTCCATCCACCGCCGCTGATGTCCACCGCCGCCGGGGTATCGTATCCATTTGGCGACGTCGCGGCGGGCGGCCTTGGCGGCGACATGCCGGCCAACGCCGCCAGCGTCGCCGGCTCCGCCGGGCTCATCACGCAGATGGCCTCGGTGAAGATGGACGACATCGACAACCACCCACCACCGTCTGCGGCAACGACGACGGCGAGCTCGCCGATTGAGTTCCTCGGTCTCCGTGGAAGCTTGCAGTTCTGGGGAGGCGGCGGCGGCCACCGTGGCGGTGGTGATGGTGCCGGCGGCAGTGCTGCTCCCGGCGGCGGCGGCGGCGGGTGGTCCGACCTGCCGGCGTTTGACTTGTCAACGTCTGGAAATATACTGTGA
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| Protein seq | QHQAHHGHHQLHQSVEANQLPMTSASLLLAPRSPDMAAAGILPVSGGGGASSARPVSMAERARMAKIPQPEPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGFRRNKRGTKPSNSKKPAAAVAGGVMAPPHAQLQLPFGFDGGGGGGHGSIIGGGGGGGASRLGFPELSSLHAAAAVDYQLGGGGGGDGLGLERQRLPHFPFLARSNAAVHPPPLMSTAAGVSYPFGDVAAGGLGGDMPANAASVAGSAGLITQMASVKMDDIDNHPPPSAATTTASSPIEFLGLRGSLQFWGGGGGHRGGGDGAGGSAAPGGGGGGWSDLPAFDLSTSGNIL |
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| Function | Dof zinc finger protein DOF3.6 [UniProtKB/Swiss-Prot:Q9M2U1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0236700 | Os07t0236700-01 | Chr07 | 7604107 | 7605638 | - | irgsp1_rep | ||
| CDS seq | CAGCATCAAGCTCACCATGGCCATCATCAGCTTCACCAAAGTGTGGAGGCGAATCAGCTGCCGATGACCTCGGCCAGCTTGCTGCTTGCTCCTCGGTCGCCAGACATGGCCGCCGCCGGGATCCTTCCGGTGAGTGGTGGCGGCGGCGCCTCCTCGGCGCGGCCGGTGTCGATGGCGGAGCGCGCCAGGATGGCGAAGATCCCGCAGCCGGAGCCGGGGCTCAAGTGTCCGCGCTGCGACTCCACCAACACCAAGTTCTGCTACTTCAACAACTACTCCCTCACCCAGCCCCGCCACTTCTGCAAGGCTTGCCGCCGCTACTGGACCCGCGGCGGCGCCCTCCGCAACGTCCCCGTCGGCGGCGGCTTCCGCCGCAACAAGCGCGGAACCAAGCCCTCTAACTCCAAGAAGCCCGCCGCCGCCGTCGCCGGCGGCGTCATGGCGCCGCCGCATGCGCAGCTGCAGCTCCCTTTCGGGTTTGATGGCGGCGGCGGCGGTGGCCATGGTAGTATCATCGGTGGTGGTGGTGGTGGTGGCGCGTCGAGGTTAGGGTTTCCGGAGCTCAGCTCGCTGCACGCGGCTGCCGCCGTCGACTACCAGCTCGGCGGCGGCGGCGGCGGCGACGGCCTCGGGCTCGAACGGCAGCGCCTCCCGCACTTCCCGTTCTTAGCCCGATCCAACGCCGCAGTCCATCCACCGCCGCTGATGTCCACCGCCGCCGGGGTATCGTATCCATTTGGCGACGTCGCGGCGGGCGGCCTTGGCGGCGACATGCCGGCCAACGCCGCCAGCGTCGCCGGCTCCGCCGGGCTCATCACGCAGATGGCCTCGGTGAAGATGGACGACATCGACAACCACCCACCACCGTCTGCGGCAACGACGACGGCGAGCTCGCCGATTGAGTTCCTCGGTCTCCGTGGAAGCTTGCAGTTCTGGGGAGGCGGCGGCGGCCACCGTGGCGGTGGTGATGGTGCCGGCGGCAGTGCTGCTCCCGGCGGCGGCGGCGGCGGGTGGTCCGACCTGCCGGCGTTTGACTTGTCAACGTCTGGAAATATACTGTGA
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| Protein seq | QHQAHHGHHQLHQSVEANQLPMTSASLLLAPRSPDMAAAGILPVSGGGGASSARPVSMAERARMAKIPQPEPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGFRRNKRGTKPSNSKKPAAAVAGGVMAPPHAQLQLPFGFDGGGGGGHGSIIGGGGGGGASRLGFPELSSLHAAAAVDYQLGGGGGGDGLGLERQRLPHFPFLARSNAAVHPPPLMSTAAGVSYPFGDVAAGGLGGDMPANAASVAGSAGLITQMASVKMDDIDNHPPPSAATTTASSPIEFLGLRGSLQFWGGGGGHRGGGDGAGGSAAPGGGGGGWSDLPAFDLSTSGNIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0236700 | RBH | 0.0 | 0.408035 | 0.568776 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g13260 | RBH | 0.0 | 0.260818 | 0.139148 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0821200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0008340 | RBH | 0.267617 | 0.0 | 0.487693 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008440 | RBH | 0.0 | 0.0 | 0.203600 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0008290 | RBH | 0.417085 | 0.0 | 0.402492 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0008100 | RBH | 0.045365 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0008220 | RBH | 0.0 | 0.0 | 1.113552 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0130200 | RBH | 1.056524 | 1.332685 | 4.7237735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0008700 | RBH | 0.061746 | 0.0 | 0.078650 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0131100 | RBH | 1.456163 | 1.80975 | 0.9810655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0008190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0008200 | RBH | 0.103012 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0008190 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0008370 | RBH | 0.230637 | 0.0 | 0.199831 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0008270 | RBH | 0.164478 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G008260 | RBH | 0.148626 | 0.0 | 0.241111 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0008150 | RBH | 0.298937 | 0.0 | 0.498676 |
