Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0129700 | OGI:07004730 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:1566125-1572085 | ||||||||
| Gene Symbol | OSH15, OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3, RLB | ||||||||||
| DNA seq | TCTCCCCTCCCTCTCGCCATTGGAGCTAGACAGCTCGAGCTCCAGGAGGAAGAAGAGAGAGAGCCTAGCTGCTAGGGTTTCCATCGGATTTGGTTTTTTATTTTCTTTTTGTTTCTTGTGTGTGTTTTGATGGATCAGAGCTTTGGGAATCTTGGAGGAGGAGGAGGAGCAGGGGGGAGCGGCAAGGCGGCGGCGTCGTCGTTCCTGCAGCTGCCGCTGTCCACGGCGGCGGCGGCCACCGCGTACTACGGCACGCCGCTCGCCTTGCACCAGGCGGCGGCCGCGGCTGGCCCGTCGCAGTACCACGGTCACGGTCACCCCCACCACGGCGGCGGCCACCACCACAGCAAGCACGGCGGCGCCGGTGGTGGGGAGATCTCGGCGGCGGAGGCCGAGTCCATCAAGGCCAAGATCATGGCGCACCCCCAGTACTCCGCCCTCCTCGCAGCCTACCTCGACTGCCAGAAAGTATATACGCTCGATTAATTCTTCTCCGATTTTGTTGAACAAAATACTCCGTAGTAATTATCTATCGATCATATATATCACTGCAATTTTGATCCATCCATCCATCCAGGTCGGAGCGCCGCCGGAGGTGCTGGAGAGGCTGACCGCCACGGCGGCAAAGCTGGACGCCCGCCCTCCCGGCCGCCACGACGCGCGCGACCCGGAGCTCGACCAGTTCATGGTTCGTTCGTCCCCCCCCAACTCCGGCGACCAGTTCATATATCGTTCATGATATATTGACCCGTCCGTACGACGTTGAATCGATCAATCACCGATGTTGGTTGCATTGATCGGGTTGATTAATCGGAATCGAATCAATCTTCGACGCAGGAGGCGTACTGCAACATGCTGGCCAAGTACAGGGAGGAGCTGACGCGGCCGATCGACGAGGCCATGGAGTTCCTCAAGAGGGTGGAGTCGCAGCTCGACACCATCGCCGGCGGCGCCCATGGCGGCGGCGCCGGCTCGGCGCGCCTCCTCCTCGCCGGTAAATCAACCAATCATCCATCCCCCTCCTCCTGCTCTCGCCTGCGGTTTTACTTCTATTTACACACATGCTCCTTCTGCTTCTTCTCTTCTGCTGCTGCTGCTGCTGCTGATGATGATGATCTCGTCGTCGGCGGCGATGGCGGCGGCGGCGGCGGCGGAGGCTTACCGCATTAGGAAATAGTTTGATCCGGATAATGGAGGTGGTTGCTTTGGATGATTGCCATTGTTAGTATAGCTACCCATCCAAAGCCCTGTGGATTAGTAATTTATTTATTGGGGTTAGTAACAAGACGCCTTTGCAGCAGCATGCACTAACAAAAGTAATTAAACTAACAATTAGTAGCGGTCTAGTCGAGTGATTAATCTAATCATGTTGGCAACCAGGGCACTGTGAGCAACCATGTCTCAAGCTTCTCCTCCTCTCGTTTCAGCAGCTTCACCTCCATTGTTTATTGCATCCATCCATCCATCCATGGCAGCAGCTAGCACAGCCTAGTTGCAAAACACAACACATGCTAGCCTTTCAACTCAACCATTTCTTTTTTCCCCTCTTTCTTTTGGCCATGAATTGTCTCTTCTCTCTTTCTTTTCTTACTGCTCTACTAGATGACAAGTGACTAGAAGCCTTGTCTTTAGGGTTCCAAGGCATGCAGGGCAGAGGAGAGAATCAGCCTGTCTATAGACTAATAGCTAGATTGATGGAGATTCTGAATGGTGATTAAGCCCAGTAAACAATGGTTTGAGGAAGAGTATTATAACTACATAGAGATGTATGGCAGTACAAGCTTGGTTAATCATCTCTCTGGTTGCTGCTGATTGGATAGCATGCATGCATCTACCCCGGATCAGTAGTATTATTCTTTTCTTGCTCTAGTGGAAGTAGAGCCATATGCATTGGAAATTGTTGTCATGGGGCTAGCTAGGTACCCAATGTTGCAGCAGCACTGTACGAACCGTCTTTCTTCTTCGCACGTAGCACTGCAGCTGTTCTTGTAATGGTTTTGGGATGCAGCACAGATTCATCTGGGCGTTCGTGTTTTCCGGGGGGTTGTACTGTCGATTGCTGCAGGGCAGGATAATCAATTAATATGATAGAGATCTGATGAACTGTTGATAGACTACTGTTGAATGCTTTTTATTTTCTGTGCATATATATATGTATAGAAGTATTGGAGAAGAGTGTCTGATTGGTAGATCAAACTAGGTCAGTTGCATTTGATTCATGATGGAAATTAAGACAGTTGTTGGAGCTTGCCAGCTGCTACTAGTAGTTTTCCTTTTTTTTTCTTGTGAAAGATTCAATTTGATTAAGCAGAGATGCAACTTTATTAGGCAATATTAGTGGAAGTCCCTTAAATGAAAAGTTACAGAACCATATATTATCAAAGGTTTTTATGAACAATATACAAATTTATTCTATGATCATTTTTTATATTACTAAATCTATGTTCGTCAGATATTGGGAAAGATTCACCCGGCACTTATGCTGCAAATGTGAACTCTTCTCTATTATCTAAAACAAATGGGAGAGATTACTAGTTTCTTATCTCTGTGATGCTCAAAACCTCACATGGTGATTCTGTATTCTCTCTATATAAGCCTAGCGCATCTATGCTGAATTTTCACAAATAAATCTCAACTATTGAAATTAGGCCACTTCAAAAGATCTTTTGTCAATGAGTTTGCTATATGTTGGTTTACTTCTATGATTGCTTTTTTGATAATGTATTTCATCTCATCCTCGCGCATGCATGCCCGGTTATTTATTGCCAGTTATGTGTTCCATTTGAGATTTAAAGAACCAGCTAATATATTATTATTGTTTTTCTTGTTTGTTATGGTATGACAACTGTCCTAGCAAATCCACATCCACACATCGATCTATATATCTTAACCAATCAGCAAGGCTCTATTTGTTTGTATAGATCAGCATGTTGTTTATATCGCATCATTGGTATTAAATTGTAACAGTTGCCTACTATACTGGTGAAACTTCTGCCTTTAAAACAAATGACACTAGCTTATACATTAAACAAATATGATTGTGCAAATGCATTTACTAATTTTTTTTATCTAATAAACTGTGCTTGTCACTTGTCAGTGTTTAACAAACTGTCCATTTTTCAGTCATTCATAAGTGTCAGTTTCCGCACCATTAGTTTTAGTATTATGGTTTCCTACTCTTGCCATGTATGCTTAATTAGATTCACTTTGCTGAAACTTGGAAAATTACCATTAATGTGTCCAAATCCATGGACTGGTTTTGATTTTATAATTTTATCAAAACTGTTTGAGAAATGTATTTTTCAAATGAATTATCATGTTTACTCATTCCACAAGTTAATTAACGTGTTTCTCCTCAAAATAAGCTAATGCGTTTTCTATAGGCGCCACAAATAAAAAGCAAAGGGTTCATTCACAAAATTTTGAAGGTTTTTTTTAGCAAATACCAAGTGCCATGTTATTAAAAGATTAAAATCTTGTCACTGTTAATGCATTAGTACATCAGGAATAATTCTTTTTCTGCGTAGAAGCACAAGGGCAACATTGGTGTATTTGTCATGCCATTTCCTTTTTTCATGTTATTTGTACCTCATCTTAAAAAAAAGGAGAAAGTATTACATAGGGGACTAATAGCTTATGTGAAAGACCACCGACTGGTTTATAATTAAACACTGGCTCATTTCTTTGAAGCTTTTTTTTTAAGGATCTGGTTTTCCCTCTAGTAGTTCTGAGCTGATGAAAAGTTTCTATAGCGGGTTACTGAGAGAATTACAGTCATTGTGCTACCATGAGAATAAATACAATAACAGAGTAACAACCATGAGAATATGTTCAAGAACTAATGGATTCTAAAATTTGAAAGGCGCTTAAAATGTTTTCTTGACACTATTCATGATGAGAATTAAACGGTTAATCAAGTAAGACATGGGACGATAACAACTACTACCTAATCCTGTAAATCTACAGAATCTCCATGCTTTTCAGTTGCTTTTTATGCACCCACAATATAGTTTTCAGTTGCATGTTATCATTGGAGGATGTAGAATACTCATGCATGCACAATTTTTTATAATATGGGGCCACATATATTATCTTTTATTTTCTTGTATCACATCCTGGGTCAGATCAACAACTGTCACTGTACAGTTTCCTATGTATAGATCAATTATTTTGATTGCCCATCTGAAATTAAGTTATGGTCATATGTATCTTTATTTATTTTGAAGTTGATCTCCGAATTATTCAATTACATAGGCCCAAGACAACGCTTTATGTGTGATATTTTTGTTTCTGGTTGTATGGTAGTAATTTTTGTTTTTTTGCTTTTATTTTATCCATTTCTTTGTTATATGCTATATTCTGTAGGACGCATGGTCAGCATGTGACCATTCTGTTTAGAGCAGAGAAATGCTCTGTCAATTCTTTATTTCTTTCCACTAAATGATTCTTTATCTACTGCCATAATATGTATTCCTTTGACCATTGGACCAAGTTTTTTAGGCCAAAGACCTAGCTTTTATATAAAGCAAAAGAACATAGGTGATAAGAGATAGGACCAAGTTTCAGTCAGTATCATTTTTTTCGTCGAAGCCTGGGACTCTACGTATACCTAGTTCAGTGGTTTCTACTATTTGGTTTATCAAACACTGTTTTAAAACCATAATCTGCACACCACAATCTGGTCAATATATCTTTCAACTGGCTGATTTGGCACAAATCAAACCTGACAAATTAATAAACCTAAAGCAGTGCTAGTTTTATCCTTGTATTGAATATCCTTGTCTTTTCACTTGCATAGTTTTTTTTACCGTTTTTTATAGTGTTTTCTTCTACGAAATCAGTAGGGCAGGATCCTTCTTGAAATCCATACTCTTTACTGTAGCTACTCTACCAGTAGTCAAATACACAGTGTCACCCTATTCTTGCATTCCAAAATGGATAGAGTTGTTTACCCACAGCTATGGGCCTTTCTGCGTCTGTTCCATTGCTGACCAACATGGTCTAGACTGAAGCTCATTCCAACAATACAATAGAAATCTGATGAACAAAATGTAGTATGATCTCTTACATTAACCACCTTTTGTCTGCAGATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTGGCCGCGAAAACGAGCCGCCTGAGATCGACCCGCGCGCTGAGGATAAGGAGCTCAAGTTTCAGCTTCTGAAGAAGTACAGTGGCTACTTGAGCAGCCTAAGGCAAGAATTTTCCAAGAAAAAGAAGAAAGGAAAGCTGCCTAAGGAGGCCAGGCAGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAGTAAGATTACACATACAAAATTACCTGATAATATATAGTAATTGCCACAATTACCTAATGCATACATAGTTCTACAAACATCTTAGTTCAGATCAGATGCATCATCACATTGTTACTAACTTTGCACCAATGGGATGAGTAGGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGGAGGACATGCCGTTCGTCATGATGGAAGGTTTTCACCCACAGAATGCTGCTGCATTGTACATGGATGGCCCGTTCATGGCAGATGGAATGTACCGCCTCGGTTCGTGAACCTCGATCTCGATCATCGGCGTGTTTGATGAGAGATCCAATGCCAAGATAAATTGATCATGGAATGTATTCAGCATGCGTTGCAATGCATGGACATTGTTATGGAATTTTTGGTTTATTTACCTTTCACCGTGGATTGACAAGGTCTCGATCATGTTAGTGTTGATGGCTTATAGTTCTCCAGTAATGTTGTTGTTTTTCCTTTCGATGGCTTGTAAAAGTTTAGGTGTATCGGAATTTCGATCAACTTGCTCGTACGCTGGTAATT
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| CDS seq | ATGGATCAGAGCTTTGGGAATCTTGGAGGAGGAGGAGGAGCAGGGGGGAGCGGCAAGGCGGCGGCGTCGTCGTTCCTGCAGCTGCCGCTGTCCACGGCGGCGGCGGCCACCGCGTACTACGGCACGCCGCTCGCCTTGCACCAGGCGGCGGCCGCGGCTGGCCCGTCGCAGTACCACGGTCACGGTCACCCCCACCACGGCGGCGGCCACCACCACAGCAAGCACGGCGGCGCCGGTGGTGGGGAGATCTCGGCGGCGGAGGCCGAGTCCATCAAGGCCAAGATCATGGCGCACCCCCAGTACTCCGCCCTCCTCGCAGCCTACCTCGACTGCCAGAAAGTCGGAGCGCCGCCGGAGGTGCTGGAGAGGCTGACCGCCACGGCGGCAAAGCTGGACGCCCGCCCTCCCGGCCGCCACGACGCGCGCGACCCGGAGCTCGACCAGTTCATGGAGGCGTACTGCAACATGCTGGCCAAGTACAGGGAGGAGCTGACGCGGCCGATCGACGAGGCCATGGAGTTCCTCAAGAGGGTGGAGTCGCAGCTCGACACCATCGCCGGCGGCGCCCATGGCGGCGGCGCCGGCTCGGCGCGCCTCCTCCTCGCCGATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTGGCCGCGAAAACGAGCCGCCTGAGATCGACCCGCGCGCTGAGGATAAGGAGCTCAAGTTTCAGCTTCTGAAGAAGTACAGTGGCTACTTGAGCAGCCTAAGGCAAGAATTTTCCAAGAAAAAGAAGAAAGGAAAGCTGCCTAAGGAGGCCAGGCAGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGGAGGACATGCCGTTCGTCATGATGGAAGGTTTTCACCCACAGAATGCTGCTGCATTGTACATGGATGGCCCGTTCATGGCAGATGGAATGTACCGCCTCGGTTCGTGA
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| Protein seq | MDQSFGNLGGGGGAGGSGKAAASSFLQLPLSTAAAATAYYGTPLALHQAAAAAGPSQYHGHGHPHHGGGHHHSKHGGAGGGEISAAEAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTATAAKLDARPPGRHDARDPELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKSECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPFMADGMYRLGS |
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| Function | Homeobox protein knotted-1-like 12 [UniProtKB/Swiss-Prot:O80416] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0129700 | Os07t0129700-01 | Chr07 | 1566125 | 1572085 | + | irgsp1_rep | ||
| CDS seq | ATGGATCAGAGCTTTGGGAATCTTGGAGGAGGAGGAGGAGCAGGGGGGAGCGGCAAGGCGGCGGCGTCGTCGTTCCTGCAGCTGCCGCTGTCCACGGCGGCGGCGGCCACCGCGTACTACGGCACGCCGCTCGCCTTGCACCAGGCGGCGGCCGCGGCTGGCCCGTCGCAGTACCACGGTCACGGTCACCCCCACCACGGCGGCGGCCACCACCACAGCAAGCACGGCGGCGCCGGTGGTGGGGAGATCTCGGCGGCGGAGGCCGAGTCCATCAAGGCCAAGATCATGGCGCACCCCCAGTACTCCGCCCTCCTCGCAGCCTACCTCGACTGCCAGAAAGTCGGAGCGCCGCCGGAGGTGCTGGAGAGGCTGACCGCCACGGCGGCAAAGCTGGACGCCCGCCCTCCCGGCCGCCACGACGCGCGCGACCCGGAGCTCGACCAGTTCATGGAGGCGTACTGCAACATGCTGGCCAAGTACAGGGAGGAGCTGACGCGGCCGATCGACGAGGCCATGGAGTTCCTCAAGAGGGTGGAGTCGCAGCTCGACACCATCGCCGGCGGCGCCCATGGCGGCGGCGCCGGCTCGGCGCGCCTCCTCCTCGCCGATGGTAAATCTGAATGTGTTGGTTCTTCTGAGGATGACATGGACCCAAGTGGCCGCGAAAACGAGCCGCCTGAGATCGACCCGCGCGCTGAGGATAAGGAGCTCAAGTTTCAGCTTCTGAAGAAGTACAGTGGCTACTTGAGCAGCCTAAGGCAAGAATTTTCCAAGAAAAAGAAGAAAGGAAAGCTGCCTAAGGAGGCCAGGCAGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGGAGGACATGCCGTTCGTCATGATGGAAGGTTTTCACCCACAGAATGCTGCTGCATTGTACATGGATGGCCCGTTCATGGCAGATGGAATGTACCGCCTCGGTTCGTGA
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| Protein seq | MDQSFGNLGGGGGAGGSGKAAASSFLQLPLSTAAAATAYYGTPLALHQAAAAAGPSQYHGHGHPHHGGGHHHSKHGGAGGGEISAAEAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTATAAKLDARPPGRHDARDPELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKSECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPFMADGMYRLGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0129700 | RBH | 0.0 | 0.0 | 4.489302 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g03770 | RBH | 0.0 | 0.0 | 1.084434 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0771500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001850 | RBH | 0.0 | 26.858036 | 6.288457 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001850 | RBH | 0.0 | 2.746886 | 4.203450 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001730 | RBH | 0.0 | 15.011328 | 7.217826 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001710 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001790 | RBH | 0.0 | 4.242129 | 16.887751 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0026700 | RBH | 0.795695 | 10.3600555 | 8.975523 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001850 | RBH | 0.0 | 1.299762 | 1.410318 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0023300 | RBH | 0.966443 | 7.260119 | 65.096197 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001850 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001820 | RBH | 0.0 | 3.851503 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001910 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001820 | RBH | 0.0 | 5.063704 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001850 | RBH | 0.0 | 0.544327 | 4.801298 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001790 | RBH | 0.0 | 13.289844 | 6.901653 |
