Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0116050 | OGI:09005370 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:874545-875959 | ||||||||
| Gene Symbol | POW1, OsPOW1, PANDA | ||||||||||
| DNA seq | TTATTTCCTTCGTGCTACGTAATGGTTCCACATCCGTTGTGCCATGTCATCTCGTTTTCTATTCCCAGCTTCTCTAGAGTTGTTAAATTCTTGTACATCACCATTATAGTTCTCGTCTCCATTTGGCACATCAACAATATGATCTGGATCAATCTCTAAACGACAATTACTTGGCCACACCAAATCTCCATTATGCAGGCGTATGAAGTTGTGTAGAGCACAACAGGCAACCGAAATATCAACTTGTTTATGAGCTGGGTGGTGTGAGCCGGTCTTTAGTATAGGAAATCTCATTTTTAATACACCAATTGCTCTCTCTATATGGTTTCTGAGTTGTGCATGCCGAAGATTGAATAACTCCTTATAATTTTGTGGCTTTTGATTAGCTCTGCCCTGTTCCTTTAAATGATATCTTGTCCCACGATACGGTGCTAGAAACTGTGTTGTATTTGCATAACCAGCATCTACAAGAAAAAATTTACCAGGAGGTACTTCAAAACCATGGTTTAGTGCATCTTGAAGAACTCTTGCGTCTGAAGCTGATCCCTCCCAGCCGGCATGTACATGTACAAATTTCAGATCGAAGTCGCAAGCTACCATAACATTCTGAGAAATTGTTTGCTTTCTATTCCGGTATGGTTCTTGCTGGTCTAGTGGAAGTATCATTGGTACATGTGTCCCGTCAATAGAGCCAACACAATTCTATACAAATACAAATATAACCTTGATTAAGTCTTTTTATGTACAATGATTGGTTTAACTCAAAGTAAAAAAAAATCAAAACATGAATCTGTTCATACCTCAAAAAAGGGGTGAAATTTTGGTCTTCTCAAGATATGATGGGGGTGTAGGAAAGGTGGCCGTATATATACACATGTAAGTTGCTTAACTGCATCAAGCACAACCCCAAAATACTTGCTTATTGTTTGCCCGCTGTGTTGAAACTGATCTTGCAAGGTCTCATTACTTGCATTTTTTGCTAGTGCATACAAGAATATAGCAACTTGTTCTTCTACTGAGACATCTCTTGCATCAGCAAGTAGTTGTTTCTCACGCAACTTATCGACTAAAGCTCGAAAAACATTAACTTCCATGCGAAAATTCCTTTTGCTTAGGCTCTGATGACCTGTTAAGATTTCATTAACACGACAAGCCCCTGAAAGTTTTGATGTGTGCATCGGTTTCCTACTAGATGATGGTTGTGACGAATCTCCTTCGATGGTAGGGAGAACAAAAAGCATGAACTCATCTTCATTCTGTGACCGTCGTCGATAACTTGGATCCATGACAATCACAGGGGAAATCAACAACAAATAATAAATCTGATGGTTTGGTCTACCAATATATATAGGAGAGCAGAAGCAAGCAAATAAGTTGTTAATCCTTACATACATACCAAAAAGAAAAAAAATCAT
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| CDS seq | ATGATTTTTTTTCTTTTTGGTATGTATGTAAGGATTAACAACTTATTTGCTTGCTTCTGCTCTCCTATATATATTGGTAGACCAAACCATCAGATTTATTATTTGTTGTTGATTTCCCCTGTGATTGTCATGGATCCAAGTTATCGACGACGGTCACAGAATGAAGATGAGTTCATGCTTTTTGTTCTCCCTACCATCGAAGGAGATTCGTCACAACCATCATCTAGTAGGAAACCGATGCACACATCAAAACTTTCAGGGGCTTGTCGTGTTAATGAAATCTTAACAGGTCATCAGAGCCTAAGCAAAAGGAATTTTCGCATGGAAGTTAATGTTTTTCGAGCTTTAGTCGATAAGTTGCGTGAGAAACAACTACTTGCTGATGCAAGAGATGTCTCAGTAGAAGAACAAGTTGCTATATTCTTGTATGCACTAGCAAAAAATGCAAGTAATGAGACCTTGCAAGATCAGTTTCAACACAGCGGGCAAACAATAAGCAAGTATTTTGGGGTTGTGCTTGATGCAGTTAAGCAACTTACATGTGTATATATACGGCCACCTTTCCTACACCCCCATCATATCTTGAGAAGACCAAAATTTCACCCCTTTTTTGAGAATTGTGTTGGCTCTATTGACGGGACACATGTACCAATGATACTTCCACTAGACCAGCAAGAACCATACCGGAATAGAAAGCAAACAATTTCTCAGAATGTTATGGTAGCTTGCGACTTCGATCTGAAATTTGTACATGTACATGCCGGCTGGGAGGGATCAGCTTCAGACGCAAGAGTTCTTCAAGATGCACTAAACCATGGTTTTGAAGTACCTCCTGGTAAATTTTTTCTTGTAGATGCTGGTTATGCAAATACAACACAGTTTCTAGCACCGTATCGTGGGACAAGATATCATTTAAAGGAACAGGGCAGAGCTAATCAAAAGCCACAAAATTATAAGGAGTTATTCAATCTTCGGCATGCACAACTCAGAAACCATATAGAGAGAGCAATTGGTGTATTAAAAATGAGATTTCCTATACTAAAGACCGGCTCACACCACCCAGCTCATAAACAAGTTGATATTTCGGTTGCCTGTTGTGCTCTACACAACTTCATACGCCTGCATAATGGAGATTTGGTGTGGCCAAGTAATTGTCGTTTAGAGATTGATCCAGATCATATTGTTGATGTGCCAAATGGAGACGAGAACTATAATGGTGATGTACAAGAATTTAACAACTCTAGAGAAGCTGGGAATAGAAAACGAGATGACATGGCACAACGGATGTGGAACCATTACGTAGCACGAAGGAAATAA
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| Protein seq | MIFFLFGMYVRINNLFACFCSPIYIGRPNHQIYYLLLISPVIVMDPSYRRRSQNEDEFMLFVLPTIEGDSSQPSSSRKPMHTSKLSGACRVNEILTGHQSLSKRNFRMEVNVFRALVDKLREKQLLADARDVSVEEQVAIFLYALAKNASNETLQDQFQHSGQTISKYFGVVLDAVKQLTCVYIRPPFLHPHHILRRPKFHPFFENCVGSIDGTHVPMILPLDQQEPYRNRKQTISQNVMVACDFDLKFVHVHAGWEGSASDARVLQDALNHGFEVPPGKFFLVDAGYANTTQFLAPYRGTRYHLKEQGRANQKPQNYKELFNLRHAQLRNHIERAIGVLKMRFPILKTGSHHPAHKQVDISVACCALHNFIRLHNGDLVWPSNCRLEIDPDHIVDVPNGDENYNGDVQEFNNSREAGNRKRDDMAQRMWNHYVARRK |
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| Function | Putative nuclease HARBI1 [UniProtKB/Swiss-Prot:B0BN95] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0116050 | Os07t0116050-00 | Chr07 | 874545 | 875959 | - | irgsp1_rep | ||
| CDS seq | ATGATTTTTTTTCTTTTTGGTATGTATGTAAGGATTAACAACTTATTTGCTTGCTTCTGCTCTCCTATATATATTGGTAGACCAAACCATCAGATTTATTATTTGTTGTTGATTTCCCCTGTGATTGTCATGGATCCAAGTTATCGACGACGGTCACAGAATGAAGATGAGTTCATGCTTTTTGTTCTCCCTACCATCGAAGGAGATTCGTCACAACCATCATCTAGTAGGAAACCGATGCACACATCAAAACTTTCAGGGGCTTGTCGTGTTAATGAAATCTTAACAGGTCATCAGAGCCTAAGCAAAAGGAATTTTCGCATGGAAGTTAATGTTTTTCGAGCTTTAGTCGATAAGTTGCGTGAGAAACAACTACTTGCTGATGCAAGAGATGTCTCAGTAGAAGAACAAGTTGCTATATTCTTGTATGCACTAGCAAAAAATGCAAGTAATGAGACCTTGCAAGATCAGTTTCAACACAGCGGGCAAACAATAAGCAAGTATTTTGGGGTTGTGCTTGATGCAGTTAAGCAACTTACATGTGTATATATACGGCCACCTTTCCTACACCCCCATCATATCTTGAGAAGACCAAAATTTCACCCCTTTTTTGAGAATTGTGTTGGCTCTATTGACGGGACACATGTACCAATGATACTTCCACTAGACCAGCAAGAACCATACCGGAATAGAAAGCAAACAATTTCTCAGAATGTTATGGTAGCTTGCGACTTCGATCTGAAATTTGTACATGTACATGCCGGCTGGGAGGGATCAGCTTCAGACGCAAGAGTTCTTCAAGATGCACTAAACCATGGTTTTGAAGTACCTCCTGGTAAATTTTTTCTTGTAGATGCTGGTTATGCAAATACAACACAGTTTCTAGCACCGTATCGTGGGACAAGATATCATTTAAAGGAACAGGGCAGAGCTAATCAAAAGCCACAAAATTATAAGGAGTTATTCAATCTTCGGCATGCACAACTCAGAAACCATATAGAGAGAGCAATTGGTGTATTAAAAATGAGATTTCCTATACTAAAGACCGGCTCACACCACCCAGCTCATAAACAAGTTGATATTTCGGTTGCCTGTTGTGCTCTACACAACTTCATACGCCTGCATAATGGAGATTTGGTGTGGCCAAGTAATTGTCGTTTAGAGATTGATCCAGATCATATTGTTGATGTGCCAAATGGAGACGAGAACTATAATGGTGATGTACAAGAATTTAACAACTCTAGAGAAGCTGGGAATAGAAAACGAGATGACATGGCACAACGGATGTGGAACCATTACGTAGCACGAAGGAAATAA
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| Protein seq | MIFFLFGMYVRINNLFACFCSPIYIGRPNHQIYYLLLISPVIVMDPSYRRRSQNEDEFMLFVLPTIEGDSSQPSSSRKPMHTSKLSGACRVNEILTGHQSLSKRNFRMEVNVFRALVDKLREKQLLADARDVSVEEQVAIFLYALAKNASNETLQDQFQHSGQTISKYFGVVLDAVKQLTCVYIRPPFLHPHHILRRPKFHPFFENCVGSIDGTHVPMILPLDQQEPYRNRKQTISQNVMVACDFDLKFVHVHAGWEGSASDARVLQDALNHGFEVPPGKFFLVDAGYANTTQFLAPYRGTRYHLKEQGRANQKPQNYKELFNLRHAQLRNHIERAIGVLKMRFPILKTGSHHPAHKQVDISVACCALHNFIRLHNGDLVWPSNCRLEIDPDHIVDVPNGDENYNGDVQEFNNSREAGNRKRDDMAQRMWNHYVARRK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0116050 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g07880 | SBH | 1.268478 | 0.529976 | 1.284461 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0643050 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027990 | SBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017820 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017740 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0088400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0093500 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009930 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G018910 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027270 | SBH | 0.0 | 0.000000 | 0.000000 |
