Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0731900 | OGI:06087140 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:31212403-31217518 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGGATCGCGCCGCGCCGCACTCCTGTCTGTCTCTGCACTCTCGGACTCGTCTCCCATCCCTGGGGCGTGGGATCCCCTTCCGACCAAGGCAAGGCGAGGCGACCACCTGTCGCCGCCGCCGCCGCCGCCATGAAGCCTCCGCGGCGCCGCTATGGTTTACTCGCGGTGGTCGTCACTCTCATCGTCCTCGCCTCCCTCCAGATCCAGTTCCACCACCTCAAGGTTCTCTCCTCTCTCTATATCTATAATAGCTTCGCCATCCATTTTTAGGTAGGGTATTAGAGCATCTCCTTCTTTGAGGAGCTCCTCTTGCCTGCTATCAAAATCCAACCCATTGATGGGAACTTCCATCAGGAGGACCGTCTCACCGGGGACCGCACCTTCGCCACCACCACCACCGACCCCGTTCACTGGCGGACCGGCGCCGAGGGCCTGCCACGCGGCATTGTTCACTCCAACTCCGACATGTACCTCCGCCCTCTCTGGGACTCTGGCGCCAACCCCAAGGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTGCTTGCTTCTTCTTCTTGGTAATATTAGCCTTGCTCAGTCTGGGTCTGGTTTTATAGTAGCATCCTATCCTATATAACCCTACCACCCATCTCTACTATCATCATCTGCTTCCAGTTTCAACTTAACAGGCGATTCGTTTGCCCATTTTATTGCTAATGTATACTCTGTTAATTGTGCAGAATAAAAACGATAATCACAATGCTCTTTTGGCGATGGCAGTCGGCATTTCACAAATGCAGAATGTAGACATTATGGCCCGTAAGGTGTGTCTTTATCTCATATTTCTTCTTCTTGCATAAAAATAATATATATTTCTTCTTCGCCTTTATTGTTTTTTCTTATTTATGTTGTTTGGTAAAAAAAATTACCTATTCTAATATGGTTTTAACCATTTACTTGTTTAGTTTCTTAACCAAAACTACACAGTCATGCTCTTCCATTATGACGGGAATGTAGATGGATGGCACAATCTTGAGTGGAGTGATAAGGCCATACACATACTTGCTCGTAACCAAACAAAGTGGTAATTCCCACGTAGCTTGCATTCCATTGCTTTACTTTTTATGGTAATTAGATATATATTCCCTTTCCTCAAAAGTGTAGTATTGAGCGTCCCCATTCTTCAATATATACAAGATGTAATAGTCCTTTGCTAAAATAGTGCAATGTTCCATTTCATTAGATTTTCCCACTTCCAAAGCAAGCATATGTTCCTGCTGCAGGTGGTTTGCTAAGCGCTTTCTACATCCTGATGTTGTGGCTATCTACGGTTTTATCTTTTTATGGGATGAAGACCTTGGAGTGGACAACTTTGACCCGAGAAGGTATGGCCCAGGTTGTAGGCCTTCTGCTCTAGGCAGATATGTTATTCAGTGCTCAGTATGAAGTAAAACATACCATCTCACCATCCAAGATCTTGATATCAGCACCTCTTTGCTAGTGTACTTAGTTCAGTCAATTTGAAGTTTCATATGCTTTCATGTTATGTGCTGCAGGGAACTGAAATTTTGCTTATGATTCAATAGTTTGTCCTGCGAACTCTTAGCCCCTGTACAGATTGTGGGGGCCTTTTTCAGTTTCCCGTGGGAAATGAAACGGTTCACGTGAAATTCCTGAGCTCTAAAGTCTAAAACCTGTGTTTTGTTGAACAACATTGATACCTTGGGCAGCACATTTGCCGATTTATGAAATTTAACATGTGTTGACCTTTCTCCTGTGTTCATGTTCTAATCTCGGCATCTTACATGCTAATGCTACTATGCTACTCCCTCCGTTCCAAAATATTGCAACCTAGGATGGGTCTACTACGAATCTGGACAAAGATTCGTAGATGAGACATGCTGCTGAAACGTGGGCAGCGTTTGTTGTTGATACGACTCCTGTGAGTTGTGACACCTAATCCTTGCGATGATGGAATGGAAAAATTGACACCTAATCAGATTCGTATTACTAGGATGGGTCTGATCCCAGGCCCATCCTAGGTTGCAATATTTTGGGACAGAGGGAGTAGTAATTAGTCAGCTATACTAGCTCTTCCTGTCACTGTATATAGACCAAAATCTGATCAGCCAATATGTTGGTAGCTTACAAATCTACTACTTCCTCCGTTTCAAAATGTAAGACTTTCTAGCATTGCCCACATTCATATAGATGTTAATGAATCTGGACATAACATCTGTATGAATGTGGGATATATGTCTAGATTCATTAATATCTATATGAATGTGGGCAATGCTAGAAAGTCTTATATTGTGAAACGGAGGGAGTAGCATTTATTCAGATGGAAGAGTGTATTTTTCTTTTTTAGCCTTTTGCATGAGGTTTTGGGACGGAGTTTGTTGTTGATGATATATATATTTTGGTGGAGCGATCTTTACTTACTTTTTTTTGACGTAAAACAGTAGGAGAGGCTCCTACTATGCTAGATCTTTACTTACTTTGGTCATTGATGTTCTTGTATCCGTAGTATATTGCTCCTCTTTTTGTGCTGAAAGTGCCTTCTCATTTGCATGTTCTCTTCCTAGATATCTTGATATAATGGTTTCTGAAGGATTGGAAATTACACAACCTGCTCTGGACCCTGATCTATCGACTGATATTCACCATCGGATCACAATCCGCAACAAGATGATGAAAGTGCATAGGTGCCATGTCTTTGTAATTTTCAATTTTTTCACATCTCAAAACGTCATTTGTTTTTGCTAATAAATGCACCATTCTTTTTTAATGATTATTTAGGAGAATATATGATAACCGTGCAAGTATGAATTGTTCTGATGGAAGTAAAGGACCTCCATGCACAGGGTAAAGATTGTTTAGCCTCATGAGCTTACTTTTGATTCTATTCCAAGTCATATTTTGCTGTTGCTGTTTTGTTCGTTGGCCTAGAGTTTATCTGGTTATCTGCCCTTCTTTATTTTAAATCTTGACACAATTTATTTTTCTAATATTTAGTAACCGCCAGATCATGGGTTGAATGAATGTTTGAGAATATTGTACTTTTCTTTCTTGGATAGGTGGGTTGAGGGCATGGCACCTGTTTTTTCTCGGGCTGCTTGGAGATGTGTATGGCATTTGATTCAGGTGCAAATTCTGATAGTGCAGTCTCAATTTACCCTGCCATCTGATTATATTGATGTTGACTGAAATGTTGTAACTCTTTTCTTGACGCAGAATGACCTGATCCATGGATGGGGCCTTGACATGAAGCTTGGTTATTGTGCTCAGGTACTCAAGATAATACACAATCATGCACTACAGCTCTATGCAAGAATCATGAACTGTTTGATTTCTTTTTTGTTATTTTCTAGGACATCCTGTTAAAGGCATTCACTGATAGTACAAGATGGCCTGACAATGTTTGTTCATTTATTGTTTATATCCACCATCGCTTGTAAAAAGGTTTTTCACCTGTGAGATGTGTAAGAAGCCACAATCCACCGAATTCCAGTTAGGTGTTTTTTTTGGAGGAAGGTGCTTTATTAATTAGCTAGGAGTTCACAATTGACAAGGGATTGAGTATAAGTTGGAGCTTGCAATCTCCAAAACGCACAATGCCTAGCCCTTCTAGCTTTGCACTAACTCATGAGCTACTAAATTACACCCTCTACTAATACACCTTACTATGACCTGTGAAAGCATCTGCATCAACCCTCGAATTTCTAAAATTGTGTAGTTAGGTGTCTTTTTGGTCCTCGGTTTAATAGTTCCTGTCATGTTATCTTCTTTTTCTTATGTATCATGTGGCTTTGTTGCTACTTTATTGCTCAAATTTCGCCGATGTTTGATCTATCATCTCATCATTGATGAAGATTCATTTTTGTTTTACATAGCATATGTTGATTGAGAATGAAAGTAACCAAAATATTAATGAATGTAGCGCCATGGGATTTCAGGGTGATCGAGCTGAGAAGGTTGGCGTAATCGACAGTGAGTATGTTGTTCATCAAGGAATACCATCGTTAGGAGGACCATCACTAAGCAGTAAGGTCTGTTTGTCGTCACAAATTGGTACTTTTGAAAGTAAAATGATGCACCTATTCCTTACATTTGTACAACATATGATCATGTCTTACATTCCAAACATTATGGTACATTTTGATGTAGCATCATATATTTTTATTTTTTTAATTGTAATTTTCATCTCCAAGACCACAAAAATGCTAAGCTGGACCTGACATTAGTACATTACAGATTAAACATTTCCAGACTCAGAAGACAGGAGCATCCAGGCAGACTTGAGATGCCCTATTTGATGATAATTTCTATTCCATGAAAAACAAAACTTAGATTTTAGGGCTTCTTACTGTCATCTTCTTTAACCTAGAGTGTTTTAAAATAAAAATAGAAATTTGTTTGGCATATGCCTGCAAGATTATAATATTAGTTTATCACCTTTATCAAGGCTCAAGAATGAAGGCTATACATACTGTTACTGACCTAGTTTTCTCACTACAGACCCCTCGGAGATCTCTGGATTTACGGACCCACGTGAGTATAATTTTATGGTCTCTTGTTAGACCAGTATAACAATTCGGTCTTTGTATACTTTTAATTTCAATCATGTTACTCTTGTTTCAATAGATTAGAAGACAATCGTCTGCTGAGCTGGAGAAGTTTAAAGAGCGCTGGAACAGAGCTGTAAGGGAAGATGAAGAATGGACAGATCCTTTTGATACTTGATTACTTTGAAAGAAGAATCCGATACAAATATACAAGCCCACCTGATACAAATATACAAGCCCACCTCACATTAGAGTTGCAGGACAGTCCACATCGATTACAATAATTGGACTCGAGATCATCTCACATGGCAATCTGTGGGCTTCATAGTAAACGGTTTGTTACAGACATTTATCTGACTAGCGTTCACCATTATGTCCTCAAGAGGTGAAGAGCCACTGGATACGGTACCATCAACACAAGGATCAAGGTGCAACTGAACGGCAACCCAAACTAACCAGAGACTTAACACAGTGTCTTGTAATTTAATTTAATTCCTCATTTCACTACGGGTGTATAGTGACATGATATACACACTTGTGCAGTTATCTTAATAGCAAGTTTCAAAG
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| CDS seq | ATGAAGCCTCCGCGGCGCCGCTATGGTTTACTCGCGGTGGTCGTCACTCTCATCGTCCTCGCCTCCCTCCAGATCCAGTTCCACCACCTCAAGGAGGACCGTCTCACCGGGGACCGCACCTTCGCCACCACCACCACCGACCCCGTTCACTGGCGGACCGGCGCCGAGGGCCTGCCACGCGGCATTGTTCACTCCAACTCCGACATGTACCTCCGCCCTCTCTGGGACTCTGGCGCCAACCCCAAGAATAAAAACGATAATCACAATGCTCTTTTGGCGATGGCAGTCGGCATTTCACAAATGCAGAATGTAGACATTATGGCCCGTAAGTTTCTTAACCAAAACTACACAGTCATGCTCTTCCATTATGACGGGAATGTAGATGGATGGCACAATCTTGAGTGGAGTGATAAGGCCATACACATACTTGCTCGTAACCAAACAAAGTGGTGGTTTGCTAAGCGCTTTCTACATCCTGATGTTGTGGCTATCTACGGTTTTATCTTTTTATGGGATGAAGACCTTGGAGTGGACAACTTTGACCCGAGAAGATATCTTGATATAATGGTTTCTGAAGGATTGGAAATTACACAACCTGCTCTGGACCCTGATCTATCGACTGATATTCACCATCGGATCACAATCCGCAACAAGATGATGAAAGTGCATAGGAGAATATATGATAACCGTGCAAGTATGAATTGTTCTGATGGAAGTAAAGGACCTCCATGCACAGGGTGGGTTGAGGGCATGGCACCTGTTTTTTCTCGGGCTGCTTGGAGATGTGTATGGCATTTGATTCAGAATGACCTGATCCATGGATGGGGCCTTGACATGAAGCTTGGTTATTGTGCTCAGGGTGATCGAGCTGAGAAGGTTGGCGTAATCGACAGTGAGTATGTTGTTCATCAAGGAATACCATCGTTAGGAGGACCATCACTAAGCAGTAAGACCCCTCGGAGATCTCTGGATTTACGGACCCACATTAGAAGACAATCGTCTGCTGAGCTGGAGAAGTTTAAAGAGCGCTGGAACAGAGCTGTAAGGGAAGATGAAGAATGGACAGATCCTTTTGATACTTGA
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| Protein seq | MKPPRRRYGLLAVVVTLIVLASLQIQFHHLKEDRLTGDRTFATTTTDPVHWRTGAEGLPRGIVHSNSDMYLRPLWDSGANPKNKNDNHNALLAMAVGISQMQNVDIMARKFLNQNYTVMLFHYDGNVDGWHNLEWSDKAIHILARNQTKWWFAKRFLHPDVVAIYGFIFLWDEDLGVDNFDPRRYLDIMVSEGLEITQPALDPDLSTDIHHRITIRNKMMKVHRRIYDNRASMNCSDGSKGPPCTGWVEGMAPVFSRAAWRCVWHLIQNDLIHGWGLDMKLGYCAQGDRAEKVGVIDSEYVVHQGIPSLGGPSLSSKTPRRSLDLRTHIRRQSSAELEKFKERWNRAVREDEEWTDPFDT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0731900 | Os06t0731900-01 | Chr06 | 31212403 | 31217514 | + | irgsp1_rep | ||
| CDS seq | ATGAAGCCTCCGCGGCGCCGCTATGGTTTACTCGCGGTGGTCGTCACTCTCATCGTCCTCGCCTCCCTCCAGATCCAGTTCCACCACCTCAAGGAGGACCGTCTCACCGGGGACCGCACCTTCGCCACCACCACCACCGACCCCGTTCACTGGCGGACCGGCGCCGAGGGCCTGCCACGCGGCATTGTTCACTCCAACTCCGACATGTACCTCCGCCCTCTCTGGGACTCTGGCGCCAACCCCAAGAATAAAAACGATAATCACAATGCTCTTTTGGCGATGGCAGTCGGCATTTCACAAATGCAGAATGTAGACATTATGGCCCGTAAGTTTCTTAACCAAAACTACACAGTCATGCTCTTCCATTATGACGGGAATGTAGATGGATGGCACAATCTTGAGTGGAGTGATAAGGCCATACACATACTTGCTCGTAACCAAACAAAGTGGTGGTTTGCTAAGCGCTTTCTACATCCTGATGTTGTGGCTATCTACGGTTTTATCTTTTTATGGGATGAAGACCTTGGAGTGGACAACTTTGACCCGAGAAGATATCTTGATATAATGGTTTCTGAAGGATTGGAAATTACACAACCTGCTCTGGACCCTGATCTATCGACTGATATTCACCATCGGATCACAATCCGCAACAAGATGATGAAAGTGCATAGGAGAATATATGATAACCGTGCAAGTATGAATTGTTCTGATGGAAGTAAAGGACCTCCATGCACAGGGTGGGTTGAGGGCATGGCACCTGTTTTTTCTCGGGCTGCTTGGAGATGTGTATGGCATTTGATTCAGAATGACCTGATCCATGGATGGGGCCTTGACATGAAGCTTGGTTATTGTGCTCAGGGTGATCGAGCTGAGAAGGTTGGCGTAATCGACAGTGAGTATGTTGTTCATCAAGGAATACCATCGTTAGGAGGACCATCACTAAGCAGTAAGACCCCTCGGAGATCTCTGGATTTACGGACCCACATTAGAAGACAATCGTCTGCTGAGCTGGAGAAGTTTAAAGAGCGCTGGAACAGAGCTGTAAGGGAAGATGAAGAATGGACAGATCCTTTTGATACTTGA
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| Protein seq | MKPPRRRYGLLAVVVTLIVLASLQIQFHHLKEDRLTGDRTFATTTTDPVHWRTGAEGLPRGIVHSNSDMYLRPLWDSGANPKNKNDNHNALLAMAVGISQMQNVDIMARKFLNQNYTVMLFHYDGNVDGWHNLEWSDKAIHILARNQTKWWFAKRFLHPDVVAIYGFIFLWDEDLGVDNFDPRRYLDIMVSEGLEITQPALDPDLSTDIHHRITIRNKMMKVHRRIYDNRASMNCSDGSKGPPCTGWVEGMAPVFSRAAWRCVWHLIQNDLIHGWGLDMKLGYCAQGDRAEKVGVIDSEYVVHQGIPSLGGPSLSSKTPRRSLDLRTHIRRQSSAELEKFKERWNRAVREDEEWTDPFDT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0731900 | Os06t0731900-02 | Chr06 | 31212465 | 31217518 | + | irgsp1_rep | ||
| CDS seq | ATGAAGCCTCCGCGGCGCCGCTATGGTTTACTCGCGGTGGTCGTCACTCTCATCGTCCTCGCCTCCCTCCAGATCCAGTTCCACCACCTCAAGGAGGACCGTCTCACCGGGGACCGCACCTTCGCCACCACCACCACCGACCCCGTTCACTGGCGGACCGGCGCCGAGGGCCTGCCACGCGGCATTGTTCACTCCAACTCCGACATGTACCTCCGCCCTCTCTGGGACTCTGGCGCCAACCCCAAGAATAAAAACGATAATCACAATGCTCTTTTGGCGATGGCAGTCGGCATTTCACAAATGCAGAATGTAGACATTATGGCCCGTAAGTTTCTTAACCAAAACTACACAGTCATGCTCTTCCATTATGACGGGAATGTAGATGGATGGCACAATCTTGAGTGGAGTGATAAGGCCATACACATACTTGCTCGTAACCAAACAAAGTGGTTTGCTAAGCGCTTTCTACATCCTGATGTTGTGGCTATCTACGGTTTTATCTTTTTATGGGATGAAGACCTTGGAGTGGACAACTTTGACCCGAGAAGATATCTTGATATAATGGTTTCTGAAGGATTGGAAATTACACAACCTGCTCTGGACCCTGATCTATCGACTGATATTCACCATCGGATCACAATCCGCAACAAGATGATGAAAGTGCATAGGAGAATATATGATAACCGTGCAAGTATGAATTGTTCTGATGGAAGTAAAGGACCTCCATGCACAGGGTGGGTTGAGGGCATGGCACCTGTTTTTTCTCGGGCTGCTTGGAGATGTGTATGGCATTTGATTCAGAATGACCTGATCCATGGATGGGGCCTTGACATGAAGCTTGGTTATTGTGCTCAGGGTGATCGAGCTGAGAAGGTTGGCGTAATCGACAGTGAGTATGTTGTTCATCAAGGAATACCATCGTTAGGAGGACCATCACTAAGCAGTAAGACCCCTCGGAGATCTCTGGATTTACGGACCCACATTAGAAGACAATCGTCTGCTGAGCTGGAGAAGTTTAAAGAGCGCTGGAACAGAGCTGTAAGGGAAGATGAAGAATGGACAGATCCTTTTGATACTTGA
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| Protein seq | MKPPRRRYGLLAVVVTLIVLASLQIQFHHLKEDRLTGDRTFATTTTDPVHWRTGAEGLPRGIVHSNSDMYLRPLWDSGANPKNKNDNHNALLAMAVGISQMQNVDIMARKFLNQNYTVMLFHYDGNVDGWHNLEWSDKAIHILARNQTKWFAKRFLHPDVVAIYGFIFLWDEDLGVDNFDPRRYLDIMVSEGLEITQPALDPDLSTDIHHRITIRNKMMKVHRRIYDNRASMNCSDGSKGPPCTGWVEGMAPVFSRAAWRCVWHLIQNDLIHGWGLDMKLGYCAQGDRAEKVGVIDSEYVVHQGIPSLGGPSLSSKTPRRSLDLRTHIRRQSSAELEKFKERWNRAVREDEEWTDPFDT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0731900 | RBH | 0.387011 | 0.498057 | 3.967412 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g51520 | RBH | 0.229289 | 0.293479 | 0.913382 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0030090 | RBH | 0.986121 | 14.680395 | 6.793319 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0029890 | RBH | 0.228858 | 5.106701 | 2.273418 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0030250 | RBH | 0.910095 | 10.315158 | 15.198704 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0029590 | RBH | 0.070269 | 0.367351 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0030090 | RBH | 0.000000 | 18.952810 | 14.749016 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0489100 | RBH | 3.1190535 | 9.8476215 | 6.576453 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0029480 | RBH | 0.172470 | 0.783829 | 1.228909 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0471400 | RBH | 2.6120195 | 5.527914 | 15.6940585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0030020 | RBH | 0.0 | 0.071171 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0029800 | RBH | 1.399718 | 16.783625 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0030360 | RBH | 0.216344 | 0.989370 | 1.078111 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0029880 | RBH | 0.0 | 7.379871 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G029780 | RBH | 0.341399 | 2.914124 | 1.255342 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0029940 | RBH | 0.443330 | 0.000000 | 1.971615 |
