Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os06g0704000 OGI:06083350 | 15/16 Nipponbare | IRGSP 1.0 | RAP-db Chr06:29727335-29731920
Gene Symbol -
DNA seq

GGGCTTTCTCCTCATCGCTTCTCTTCTCATCTCCACCCGTGAAGAGCGAATTGCTCAAGCCCTAGGAGGCGACGAGGGGGAGTACGGCGAGGGGGGGAGGTCGCGGGGATCGTCGTCGGCGGGAGGAGGCGCGGCGGGGCTGCCGGTTGCTGCTGCGCGCCCCCCTTTGCTTCGTTCGCGCATGGGAGAAGAGGAGGCAATGGTAAAAATTCTTTTGTAGATGTTGGGGTTTTGGAGTGGATTCTGGTGGTGATCCGGGGATGTATGTAGGAGTAGGAGCCCATCTATGCTGTGGGAGAAATCGGGGTTGGAGCGTGTAGAAGCCGTACCCCCCTCCTCCCCTTTTTTTTTACTCGTTTTAGGTTTTAGGTTTTGATTGTTTAAGAGTTACTTAGTTTGTATAATGTTGGATTTCAGTAGGCTTTTGAGTCGATTAGATTGAGAGATCATACGGCTAGGTTATCCGAAATGGAGAATTTTAGCAAACGAGGATTTCCAGGAAGGGGGTAAATAATAATAGTTCTTAACAACTTTGGATCAGTGCACAGTCTCACATCTTTTACACGCTTTGCGAGCGAAACGGAATGGAGAATTTTAGCAAACGAGGATTTCCAGGAAGGGGGTAAATAATAATAGTTCTTAACAACTTTGGATCAGCGCACAGTCGCACATCTTTTACACGCTTTGCGAGCGAACTTGTTTCGCTGCATAAGGTAATTTTGGCATGCCCATGTGTTGCCTCTGATGTATTATCACTATAGAGTTAGATATATTTTATAAATTTTGTGCTGAAGGTGGTTTCCACGTTTGCCGATAGCTTTCGTTACTGTAGAGTATAGACTAAGAGAGGAACATTGGCCATGTAATGATCTATTTACATGCTTACAGAAGGAAGTATGGTGAAAGTGGAAAATTCTTGAACCGACCTGTCATGGTTGCTGTTAAAAAGTGTTAACTCATTGTGTGACCAGAGTTGTACCCTTCTTCTTTTGGTAAATATGCATCAGAATGTAGATCATATGATCATATCTTTTTATGTTTTTCTTGAGGCAAGTTGTATAAAAAAAATGAGCATTCTGTACCACCACATAATACCATGTTTGAACTTCAAATGTATGATGCCTAACAATTTCTGTTTTCATTTTTTCTTAAAATTTTTTGGGTGGATTGGATCTTAGGATTCTTTAAAACTGTTGTTTATCATGTGTTTTATATGGTGCATTCTGTGATCTTAGTAGTCATCATGTACCATCATATTGGTGAGCAAGCAGATGAAATCTGATAACTTATGAAACTTTACACACTGGATAATGTTGGGAATAAGACAATGTTAGTTACTTTGCATTACATAATATGCCTTTATAACTATTCTTCAGGTTTGCACTACCCAAGATACTCAGAGAAGGAGGCTTGAAAAGGAAAAGCATGGCAAAACTGTCGATAAGGAAACACAGAAGGTGAGCTGTAATTACTGTGGGAAGGTGGTTAGGACATACAACCGTCTGGAGCACCACTTAGCGGGCATCAGGGGCAATGTTTATCCTTGCAGCTTAGTACCTGACAGTGTCAGGCAAAGCATAAAGAGTTCACTAGAGGCTCGCAAGAAAGATTGGATAGCCCGAAAAATAGGAAAACATAAATCTTCTGAGCTTCCTCCAGTAAGAAATCTATCCCTCACATCTGCTCATGCCTGCCGACCTCTTTTGCAGCCAATTACATCCGGTACGGATCAAGAAGGCTCTGTTAGTTGGCACCGCTGCTTTGTTCACTTCACAAATAATTTGGTGCAGCCCGGGGAAACTACACAAGTAAATGCCCATGATGTTTCTTGCAATGCAAGTTCATCTCAGAAGGGAGGCCAGACTATAGAAGTAACTAGGCCTCCATATCAAAATCCGTGTATGATGAATAAGCCACCGGAAATATCTTCAGGGCAGAGAATTGATCCATTGAGTTTCTCTATGGAGAATTCTTCATCACAGATGCAAGATTCGGAATCCTCAAAGGAGCCAACTAATGATTACTTGAATTCTCAGGCAAGAAAGTCAATAGGCAAGCTCATCTTTGAAGCTGGACTTGAGCCTGGTATTCTCCACTTGCCATCTTTCAAGGACATGGTTGATGTGCTTGCCTGGGCCCAGGTGGCAATCCCTACTTATGAATCGATTATGGAGGAGCAACTAAGAGAAATTCAATGCCATGCAAGGGATCTCAAGAAACACTGGGAAATGAATGGCTGCAGTGTAATTTTGGATACCTGGGAGAGTCGATGTGGTAAAAGCTTCATTAGTGTTTTGGTGCATTGCAGTAAAGGCATGTTGTTCATCAAATCAATGGATGTCTCTGATATCATTGATGACGTGGATGAGCTAGCAGTAATGCTTTTCCGTGTGGTGGAAGAGGTTGGTGTCCTCAACATTGTTCAGGTTATCACAAATGATGAGTCACCTTATATGCAAGCAGCAGAGCATGCCGTGCTAAAGAGATATGGCTACTCGTTCTTCTTCACACTATGTGCTGACCATTGCATCAACCTTCTGCTTGAGAACATAGCAGCACTTGATCATGTCAATGAGGTCCTAATCAAGGCAAGAGAAATTACCAGGTTCATTTATAGCCATGCAGTGCCAATGGAACTGAAAGGGAAGTATATTCAGGGCGGCGAGATTCTGAGCAGTTCTAATTTAAAATTTGTGGCAATGTTCATCACATTAGGGAAGTTAGTATCTGAGAGAATAAATTTGGTGGAGATGTTTAGCTCGCCTGAATGGGCTTCCTCTGATTTGGCTTCTAGAAGTTCATTCAGGCATGTCTATGAAGTAGTAAAAACTGATAATGCATTTTGGAGTGCTGCTGCTGATATTTTGAAGCTTACGGATCCACTTATCACTGTGTTGTACAAACTGGAAGCTGATAATTGCCCAATAGGTATCTTGTATGATGCTATGGATTGCGCAAAAGAAGACATAAAGTGCAATCTTCGAGACAAACATGGTGATTATTGGCCTATGGTTGATGAGATATGGGATCATTACTTGCATACCCCAGTCCATGCTGCCGGTTATATTCTGAATCCAAGGATCTTTTACACAGAAAGATTCAGTTATGATACTGAAATCAAAAGTGGGACCAATGCCTGTGTAACCCGTCTGGCCAAAAACCATTATGATCCTAAGAAAGTGGCCATACAAATGGATAGGTATCGACGCAAATCAGCTCCTTTTGATTCAGACTCAGCAATTCAGCAAACAATGGAAATACCACAAGGTAAAGTATAGCATATTCTCATGTAAAATGTCCCTCAATCACATGTTATTGCGAGCTCATGTACAGTGTTTAGACACAGCAAGATATAATAATGTTACAAGGTTTTCCATGGATCTGGCATGTGCATTACTAACTAAGATGCACTACAAAAGCATATTTGTTATGTGCAAAGTGGCATAAAGATTATCATATTTTTTGTTAAAGCCAGAATGTTGTTGTAGTTCTAAGAAAAAGTCAGAATGTTGTACTAAGTCAATTAGAGTTAGACTGTTAGTCTACTTGTCAACATGGTAAATCAGGTTCTGTTCTCCGCCTGAACGATACACAAAACATATATATAAGAGTGAATTTAAACAAAGTGCTTTGATATCCCCTTCGATGCAAATATGAGGTCTCTTTTGCACCTTTTATACTGGCTCTCCTTTTCTAATTGACGTAAGGACACTAAGGTTACCTTTAGAACAAGTGGTTTTATCTTTCATTTCACTTGGGCATTAATGTGAGGTTATCTTTCTAGTTTGTCTTCACTCCTACCCCCCCCCCCCCCCCCAAAACTGGTTCCCTCCCGTGTTACACTGATGCAAACACTTCCCATGTAATAGGCAACCTGCCACAGCCTGAACTGTTTGACTTGCTTAAGTTGTAGTAGTAGAAAATCTTCTCTTCGATGTTTAGAACTGGAACTAACGAATGCAGTTGTTGCTTTTGTTCATATTAAAGAAACACATCCTTACCATCTCTTACTTTTAAATTGCAGTTCGTTGGTGGTCGGCACATGGGACTGACACCCCTGAGCTGCAAACGTTTGCGATCAGGATCTTGAGCCAAACATGCTTCGGTGCTTCCATATACAACATTGACCGGAGCATATCCGAGCAGCTGCATGTTGTGAAGAGGACATATCCTGAGCAAGAGAGGTTCAGAACGATGGAGTATCTACACTACAATCTTCGCCTCGCCCATTGTGAGCCATGCGTACGCGGTGCTTCTGGGGCTCAACAGCATAGTAGGCTCACTAGTCAACTGGGTGACTGGATCTCATCAGGGCAGACCACCTCCTATTACAAGTGAGAAAGTGCTATGGTCTGGAGCAGTGCTTTCAGCTCTTTTTTGGGTCTTTCTGGCATTATGCTTATCCTCCAGACTCTGACAAAGCATTTCTTAGTGCTCGTACTATGCTGTTTCTTTGTTGGATTACCTGGTTTAGTTTCAGTCAAATCACCTCTGTAGTTTAACCATGTTACAAAATGGAAAACGACAGGTGAACATAGTGTTTTGGTGGCATTACCTGTGTTGAATTACCCTCCTTGTTTACTCTC

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CDS seq

ATGGGAGAAGAGGAGGCAATGGTTTGCACTACCCAAGATACTCAGAGAAGGAGGCTTGAAAAGGAAAAGCATGGCAAAACTGTCGATAAGGAAACACAGAAGCCAATTACATCCGGTACGGATCAAGAAGGCTCTGTTAGTTGGCACCGCTGCTTTGTTCACTTCACAAATAATTTGGTGCAGCCCGGGGAAACTACACAAGTAAATGCCCATGATGTTTCTTGCAATGCAAGTTCATCTCAGAAGGGAGGCCAGACTATAGAAGTAACTAGGCCTCCATATCAAAATCCGTGTATGATGAATAAGCCACCGGAAATATCTTCAGGGCAGAGAATTGATCCATTGAGTTTCTCTATGGAGAATTCTTCATCACAGATGCAAGATTCGGAATCCTCAAAGGAGCCAACTAATGATTACTTGAATTCTCAGGCAAGAAAGTCAATAGGCAAGCTCATCTTTGAAGCTGGACTTGAGCCTGGTATTCTCCACTTGCCATCTTTCAAGGACATGGTTGATGTGCTTGCCTGGGCCCAGGTGGCAATCCCTACTTATGAATCGATTATGGAGGAGCAACTAAGAGAAATTCAATGCCATGCAAGGGATCTCAAGAAACACTGGGAAATGAATGGCTGCAGTGTAATTTTGGATACCTGGGAGAGTCGATGTGGTAAAAGCTTCATTAGTGTTTTGGTGCATTGCAGTAAAGGCATGTTGTTCATCAAATCAATGGATGTCTCTGATATCATTGATGACGTGGATGAGCTAGCAGTAATGCTTTTCCGTGTGGTGGAAGAGGTTGGTGTCCTCAACATTGTTCAGGTTATCACAAATGATGAGTCACCTTATATGCAAGCAGCAGAGCATGCCGTGCTAAAGAGATATGGCTACTCGTTCTTCTTCACACTATGTGCTGACCATTGCATCAACCTTCTGCTTGAGAACATAGCAGCACTTGATCATGTCAATGAGGTCCTAATCAAGGCAAGAGAAATTACCAGGTTCATTTATAGCCATGCAGTGCCAATGGAACTGAAAGGGAAGTATATTCAGGGCGGCGAGATTCTGAGCAGTTCTAATTTAAAATTTGTGGCAATGTTCATCACATTAGGGAAGTTAGTATCTGAGAGAATAAATTTGGTGGAGATGTTTAGCTCGCCTGAATGGGCTTCCTCTGATTTGGCTTCTAGAAGTTCATTCAGGCATGTCTATGAAGTAGTAAAAACTGATAATGCATTTTGGAGTGCTGCTGCTGATATTTTGAAGCTTACGGATCCACTTATCACTGTGTTGTACAAACTGGAAGCTGATAATTGCCCAATAGGTATCTTGTATGATGCTATGGATTGCGCAAAAGAAGACATAAAGTGCAATCTTCGAGACAAACATGGTGATTATTGGCCTATGGTTGATGAGATATGGGATCATTACTTGCATACCCCAGTCCATGCTGCCGGTTATATTCTGAATCCAAGGATCTTTTACACAGAAAGATTCAGTTATGATACTGAAATCAAAAGTGGGACCAATGCCTGTGTAACCCGTCTGGCCAAAAACCATTATGATCCTAAGAAAGTGGCCATACAAATGGATAGGTATCGACGCAAATCAGCTCCTTTTGATTCAGACTCAGCAATTCAGCAAACAATGGAAATACCACAAGTTCGTTGGTGGTCGGCACATGGGACTGACACCCCTGAGCTGCAAACGTTTGCGATCAGGATCTTGAGCCAAACATGCTTCGGTGCTTCCATATACAACATTGACCGGAGCATATCCGAGCAGCTGCATGTTGTGAAGAGGACATATCCTGAGCAAGAGAGGTTCAGAACGATGGAGTATCTACACTACAATCTTCGCCTCGCCCATTGTGAGCCATGCGTACGCGGTGCTTCTGGGGCTCAACAGCATAGTAGGCTCACTAGTCAACTGGGTGACTGGATCTCATCAGGGCAGACCACCTCCTATTACAAGTGA

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Protein seq

MGEEEAMVCTTQDTQRRRLEKEKHGKTVDKETQKPITSGTDQEGSVSWHRCFVHFTNNLVQPGETTQVNAHDVSCNASSSQKGGQTIEVTRPPYQNPCMMNKPPEISSGQRIDPLSFSMENSSSQMQDSESSKEPTNDYLNSQARKSIGKLIFEAGLEPGILHLPSFKDMVDVLAWAQVAIPTYESIMEEQLREIQCHARDLKKHWEMNGCSVILDTWESRCGKSFISVLVHCSKGMLFIKSMDVSDIIDDVDELAVMLFRVVEEVGVLNIVQVITNDESPYMQAAEHAVLKRYGYSFFFTLCADHCINLLLENIAALDHVNEVLIKAREITRFIYSHAVPMELKGKYIQGGEILSSSNLKFVAMFITLGKLVSERINLVEMFSSPEWASSDLASRSSFRHVYEVVKTDNAFWSAAADILKLTDPLITVLYKLEADNCPIGILYDAMDCAKEDIKCNLRDKHGDYWPMVDEIWDHYLHTPVHAAGYILNPRIFYTERFSYDTEIKSGTNACVTRLAKNHYDPKKVAIQMDRYRRKSAPFDSDSAIQQTMEIPQVRWWSAHGTDTPELQTFAIRILSQTCFGASIYNIDRSISEQLHVVKRTYPEQERFRTMEYLHYNLRLAHCEPCVRGASGAQQHSRLTSQLGDWISSGQTTSYYK

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os06g0704000 Os06t0704000-01 Chr06 29727335 29731920 + irgsp1_rep
CDS seq

ATGGGAGAAGAGGAGGCAATGGTTTGCACTACCCAAGATACTCAGAGAAGGAGGCTTGAAAAGGAAAAGCATGGCAAAACTGTCGATAAGGAAACACAGAAGCCAATTACATCCGGTACGGATCAAGAAGGCTCTGTTAGTTGGCACCGCTGCTTTGTTCACTTCACAAATAATTTGGTGCAGCCCGGGGAAACTACACAAGTAAATGCCCATGATGTTTCTTGCAATGCAAGTTCATCTCAGAAGGGAGGCCAGACTATAGAAGTAACTAGGCCTCCATATCAAAATCCGTGTATGATGAATAAGCCACCGGAAATATCTTCAGGGCAGAGAATTGATCCATTGAGTTTCTCTATGGAGAATTCTTCATCACAGATGCAAGATTCGGAATCCTCAAAGGAGCCAACTAATGATTACTTGAATTCTCAGGCAAGAAAGTCAATAGGCAAGCTCATCTTTGAAGCTGGACTTGAGCCTGGTATTCTCCACTTGCCATCTTTCAAGGACATGGTTGATGTGCTTGCCTGGGCCCAGGTGGCAATCCCTACTTATGAATCGATTATGGAGGAGCAACTAAGAGAAATTCAATGCCATGCAAGGGATCTCAAGAAACACTGGGAAATGAATGGCTGCAGTGTAATTTTGGATACCTGGGAGAGTCGATGTGGTAAAAGCTTCATTAGTGTTTTGGTGCATTGCAGTAAAGGCATGTTGTTCATCAAATCAATGGATGTCTCTGATATCATTGATGACGTGGATGAGCTAGCAGTAATGCTTTTCCGTGTGGTGGAAGAGGTTGGTGTCCTCAACATTGTTCAGGTTATCACAAATGATGAGTCACCTTATATGCAAGCAGCAGAGCATGCCGTGCTAAAGAGATATGGCTACTCGTTCTTCTTCACACTATGTGCTGACCATTGCATCAACCTTCTGCTTGAGAACATAGCAGCACTTGATCATGTCAATGAGGTCCTAATCAAGGCAAGAGAAATTACCAGGTTCATTTATAGCCATGCAGTGCCAATGGAACTGAAAGGGAAGTATATTCAGGGCGGCGAGATTCTGAGCAGTTCTAATTTAAAATTTGTGGCAATGTTCATCACATTAGGGAAGTTAGTATCTGAGAGAATAAATTTGGTGGAGATGTTTAGCTCGCCTGAATGGGCTTCCTCTGATTTGGCTTCTAGAAGTTCATTCAGGCATGTCTATGAAGTAGTAAAAACTGATAATGCATTTTGGAGTGCTGCTGCTGATATTTTGAAGCTTACGGATCCACTTATCACTGTGTTGTACAAACTGGAAGCTGATAATTGCCCAATAGGTATCTTGTATGATGCTATGGATTGCGCAAAAGAAGACATAAAGTGCAATCTTCGAGACAAACATGGTGATTATTGGCCTATGGTTGATGAGATATGGGATCATTACTTGCATACCCCAGTCCATGCTGCCGGTTATATTCTGAATCCAAGGATCTTTTACACAGAAAGATTCAGTTATGATACTGAAATCAAAAGTGGGACCAATGCCTGTGTAACCCGTCTGGCCAAAAACCATTATGATCCTAAGAAAGTGGCCATACAAATGGATAGGTATCGACGCAAATCAGCTCCTTTTGATTCAGACTCAGCAATTCAGCAAACAATGGAAATACCACAAGTTCGTTGGTGGTCGGCACATGGGACTGACACCCCTGAGCTGCAAACGTTTGCGATCAGGATCTTGAGCCAAACATGCTTCGGTGCTTCCATATACAACATTGACCGGAGCATATCCGAGCAGCTGCATGTTGTGAAGAGGACATATCCTGAGCAAGAGAGGTTCAGAACGATGGAGTATCTACACTACAATCTTCGCCTCGCCCATTGTGAGCCATGCGTACGCGGTGCTTCTGGGGCTCAACAGCATAGTAGGCTCACTAGTCAACTGGGTGACTGGATCTCATCAGGGCAGACCACCTCCTATTACAAGTGA

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Protein seq

MGEEEAMVCTTQDTQRRRLEKEKHGKTVDKETQKPITSGTDQEGSVSWHRCFVHFTNNLVQPGETTQVNAHDVSCNASSSQKGGQTIEVTRPPYQNPCMMNKPPEISSGQRIDPLSFSMENSSSQMQDSESSKEPTNDYLNSQARKSIGKLIFEAGLEPGILHLPSFKDMVDVLAWAQVAIPTYESIMEEQLREIQCHARDLKKHWEMNGCSVILDTWESRCGKSFISVLVHCSKGMLFIKSMDVSDIIDDVDELAVMLFRVVEEVGVLNIVQVITNDESPYMQAAEHAVLKRYGYSFFFTLCADHCINLLLENIAALDHVNEVLIKAREITRFIYSHAVPMELKGKYIQGGEILSSSNLKFVAMFITLGKLVSERINLVEMFSSPEWASSDLASRSSFRHVYEVVKTDNAFWSAAADILKLTDPLITVLYKLEADNCPIGILYDAMDCAKEDIKCNLRDKHGDYWPMVDEIWDHYLHTPVHAAGYILNPRIFYTERFSYDTEIKSGTNACVTRLAKNHYDPKKVAIQMDRYRRKSAPFDSDSAIQQTMEIPQVRWWSAHGTDTPELQTFAIRILSQTCFGASIYNIDRSISEQLHVVKRTYPEQERFRTMEYLHYNLRLAHCEPCVRGASGAQQHSRLTSQLGDWISSGQTTSYYK

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0704000 RBH 0.0 0.092938 3.024248
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g49050 RBH 0.0 0.068510 0.786896
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0028310 RBH 0.065314 2.274368 1.748300
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_06g0028120 RBH 0.830115 0.728833 1.217121
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_06g0028270 RBH 0.619640 2.521484 4.142800
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0027860 RBH 0.090400 0.094593 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0028350 RBH 3.144972 3.469493 6.817504
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0467400 RBH 4.544683 2.577458 5.3293875
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0027720 SBH 0.149678 0.097098 0.503745
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0450900 RBH 5.8715015 1.559654 5.683077
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_06g0028260 RBH 0.405519 0.196901 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_06g0028310 RBH 1.782538 21.729767 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_06g0027900 RBH 3.528042 24.403395 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_06g0028560 RBH 0.817116 0.162216 0.572311
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_06g0028180 RBH 0.443598 0.785024 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_06G028060 RBH 0.470170 0.828561 2.088798
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0028140 SBH 2.416501 1.514634 2.442400
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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