Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0670300 | OGI:06078080 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:27777556-27780675 | ||||||||
| Gene Symbol | OsMPH1, MPH1, OsMYB45, MYB45, DLN171, OsDLN171, OsMYB-R1, MYB-R1 | ||||||||||
| DNA seq | ATATATCATCATCACCATCTTTATCTCCCTCTCTCTCTCTCCCTCTCTGCATATATATAGCTACTTCGATCTCTTTGTAGCAACCATCAGTTAGCTAGCTAGCTTGAGGTAGCTAGCGCTTGTATTTATCAGAAGCTTAGAGATAATTTTCAGAAGCTTAGAGAGCTATCTTAGCTACAAGGAATTACCGGCCAATCGACGGCGAGATCGATCGATTGATCATGGGAGGGTTTGAGAGGAGAGGAGTTCGGCAGTACAACCGGTCCGAGGTGCCACGGATGCGGTGGACGGAGGAGATGCACCGGCAGTTCGTCGAGGCCGTCGAGTGCCTCGGCGGCCAGGACGGTGAGTTTGAAACACCAACCATGGATATGCATGTTTGGTATTGATCAATTCAAGCTATATGAGCAGATTGATCATGCAATTGCTTAATTATTGCATGGACATGGAGTTCGCTTTGATGATCAAATTAATTGGGATTTTAATTTGCTAGGTATAGATCGAGCTATCATGTTTTTCAAGGGAACTGATTAAACGAAGTGCTTTCTTGTTCTTTTTGTTTTTTGGTTTAGAAAGTTTGGTCTCCTTAATTATTAGTTGGTGTCGGTTAGGCAGGAGTTTGAAAACGAACACAGCGTAGCAGGAGTATAGTTAAAGAAAAATAAAGACACGTGATATTATATGTGCATATGCACGATGAACACCCACGGCCCGTTCTCTTTTGGATTTTCTACGGATAATTAAGACTGAATTAAGCATACAATTTAATAAGAGTTAATTAGTTAGATGGAATATCATTAGCACAATAATTTATCAATTGGAGCCACTTTCATCCTCGACTAGCTAGATATATATCTTTTTCCAAAATTAAATTAATATATGTTCTTCTTGACGATTTTTTATTTTTAGTTTTCATCTGAAAGTAATTTAGATCAAGTACTTTAGATATTTTTACACTCTTTTTCTACCTTTAATCGTGCATATATTTGTACCTTGAGTACTAACAGCCATTTTCGTATGTACTCAGCCTGAAGTACTGATCAGTTATTATCATTTGCAAACTAAAATATTTCAAAAGTTTCAAGTACTATCTCATTTGAACATTACCGTAATTAATTATTGTGTGCTTTATCCAGCACGGTCCGGCCATACGAAGCTGAACGTACTATCGATTTTCTCTATCCTTGAGGGAGACATAATATAATTTTTGGTCTCATGATACATGCATGGACCATGGAATAACAGTACTGCATCATGATGATATTTGTTTGTAGATCATTCTTCAGAAGTGCTGATAATTTATCTCCTCTCGCTTTTGTCTGACAGAAGCAACACCGAAGCGAATTCTTCAGTTGATGGGCGTGAAGGGAGTTAGCATCTCTCATATCAAGAGCCATCTTCAGGTAATTTTGTAGACCCAGGACTTACCTTTTCAGATTTGTATGCTAATAATATACATGCATATGTATATATGCAGCATATGCTCTTTAGATTTGTATGCTAATATTAGCTAGAGATTTGATCCGTGGCTCAACCTCTTTTTTCTCTCTCTTAAATAATGGTCAGATGTACAGATCAGGCTCTAGCAACAGCAATCATCCTGTCAGCCTCCAGAAGTTGACATCAGCTACTGTTAACAACATTAGCAAACGTGAGTTTGTGAATAGTGAAGATCGCTGCATTTACGCGTCAGGGGATAGAAACACTGCATCTTCAGACAAGAATACTTACACCATACTCCGCTGCGGCCGCTCATCAATGTGAGTGTGAGAGAGAGTTAATTAGTCATTTTTCAATTAATGTTAATTCCAAGTACATATGTGTGTTATGAATTTTTCATTTTATTCAATATATTGATTTTTATACCCACTTGCAGGCCATCAATAGAAGAAATATTCAGAAACTGGGAACAAACCAGAGGGCGTCTTCTTCCATGGAACTCCAACGTGATTACAACAGAACAGGTGCCTTTCCCCTCACTGGAAGCTACGCCTCAAATAATATCACTTAATTGCATATATATAATTTGCATTTTCGTTGGACATCTGTCTGAATTTTTAGCATGTATACATCTTGGTGTATATCCTGTATTCCATTCATGTAGAGAGATAGGAAAAAGCTATGGACAAATGCAGACGTATTTTACTTAAAGAATCCATCTTCCATATATGTAGTATTCCCTAGAAGTTTTTGTTTTGGAAACATGCATTAGGTGGCAGGCTGCCAAACTAGCAAACCATACTGCCGTGTATTGACTGTTCATTCCTGCTTCTGCATGCATGGTCGAAACCATGAACTATCTAGACTATCTCTGAAACACTTAATTACAAATTTAAAATCCATATATACATTTTTCAGCAAGCTTATTAACACTGAAACGTAGATTAATTAACATATGTATATATCTTTGCAGGCAACGACTAGAGCAAGTCGTCAGACTACTAACTACAGTAAGCCTCTGAAGCAGCTGACAGACTGCGACCTGACGCTGTCGATCGGGCAGCTGTGGGACGACGCCGCCGGCAGCGACGCCGACGGCTCCAGCACGATCAGCGAGGAGGTCGCCGCGCCGTCGAGGGACGAAGCGTTCGTCTCTTCGGCCGATGACCACTTCGCCGCCGCCGCCGCGAAGAAGGAGAGCAATATGCTGACCACTGATCTGAACCTGGACCTGACCATTTCATCTTCTTGGCTGTCCTGATCATATGATCATTCAGTTGATGGGCCTGTGTATAGCTGCATTATATTTGTGCATATATGTAGTAGTATGTGTACAAAAATAACGCGGAGAGAGAGAGCGTCAGGCTAGTAGTATTTGCAGGTTACCTGATGAGATGATCTTAGAGAGTGTAGTAATATTCTGGAGATTTCTTTAGGATTATTTTCTTATGGTCAGACACAGCATTTTATTAGGTTTTTCAGTAGCGCATGCACGCGTTTATCTGTATAGTTTTCTTTCTATTATTAATTGTTCGTTCGATTAGAGACCGGGGACTTCAGACGAAGACGGGTGAGAAATTTTGACAGTTTTTGCTTCTCTTGGGTAGACTTCTCTGTTGAATTTCTCACCTTTCATCATCTGGGCAGTTCCCCTATTTCTGATCGAATTGTTTGCGCACC
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| CDS seq | ATGGGAGGGTTTGAGAGGAGAGGAGTTCGGCAGTACAACCGGTCCGAGGTGCCACGGATGCGGTGGACGGAGGAGATGCACCGGCAGTTCGTCGAGGCCGTCGAGTGCCTCGGCGGCCAGGACGAAGCAACACCGAAGCGAATTCTTCAGTTGATGGGCGTGAAGGGAGTTAGCATCTCTCATATCAAGAGCCATCTTCAGATGTACAGATCAGGCTCTAGCAACAGCAATCATCCTGTCAGCCTCCAGAAGTTGACATCAGCTACTGTTAACAACATTAGCAAACGTGAGTTTGTGAATAGTGAAGATCGCTGCATTTACGCGTCAGGGGATAGAAACACTGCATCTTCAGACAAGAATACTTACACCATACTCCGCTGCGGCCGCTCATCAATGCCATCAATAGAAGAAATATTCAGAAACTGGGAACAAACCAGAGGGCGTCTTCTTCCATGGAACTCCAACGTGATTACAACAGAACAGGCAACGACTAGAGCAAGTCGTCAGACTACTAACTACAGTAAGCCTCTGAAGCAGCTGACAGACTGCGACCTGACGCTGTCGATCGGGCAGCTGTGGGACGACGCCGCCGGCAGCGACGCCGACGGCTCCAGCACGATCAGCGAGGAGGTCGCCGCGCCGTCGAGGGACGAAGCGTTCGTCTCTTCGGCCGATGACCACTTCGCCGCCGCCGCCGCGAAGAAGGAGAGCAATATGCTGACCACTGATCTGAACCTGGACCTGACCATTTCATCTTCTTGGCTGTCCTGA
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| Protein seq | MGGFERRGVRQYNRSEVPRMRWTEEMHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRSGSSNSNHPVSLQKLTSATVNNISKREFVNSEDRCIYASGDRNTASSDKNTYTILRCGRSSMPSIEEIFRNWEQTRGRLLPWNSNVITTEQATTRASRQTTNYSKPLKQLTDCDLTLSIGQLWDDAAGSDADGSSTISEEVAAPSRDEAFVSSADDHFAAAAAKKESNMLTTDLNLDLTISSSWLS |
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| Function | Putative Myb family transcription factor At1g14600 [UniProtKB/Swiss-Prot:Q700D9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0670300 | Os06t0670300-01 | Chr06 | 27777556 | 27780675 | + | irgsp1_rep | ||
| CDS seq | ATGGGAGGGTTTGAGAGGAGAGGAGTTCGGCAGTACAACCGGTCCGAGGTGCCACGGATGCGGTGGACGGAGGAGATGCACCGGCAGTTCGTCGAGGCCGTCGAGTGCCTCGGCGGCCAGGACGAAGCAACACCGAAGCGAATTCTTCAGTTGATGGGCGTGAAGGGAGTTAGCATCTCTCATATCAAGAGCCATCTTCAGATGTACAGATCAGGCTCTAGCAACAGCAATCATCCTGTCAGCCTCCAGAAGTTGACATCAGCTACTGTTAACAACATTAGCAAACGTGAGTTTGTGAATAGTGAAGATCGCTGCATTTACGCGTCAGGGGATAGAAACACTGCATCTTCAGACAAGAATACTTACACCATACTCCGCTGCGGCCGCTCATCAATGCCATCAATAGAAGAAATATTCAGAAACTGGGAACAAACCAGAGGGCGTCTTCTTCCATGGAACTCCAACGTGATTACAACAGAACAGGCAACGACTAGAGCAAGTCGTCAGACTACTAACTACAGTAAGCCTCTGAAGCAGCTGACAGACTGCGACCTGACGCTGTCGATCGGGCAGCTGTGGGACGACGCCGCCGGCAGCGACGCCGACGGCTCCAGCACGATCAGCGAGGAGGTCGCCGCGCCGTCGAGGGACGAAGCGTTCGTCTCTTCGGCCGATGACCACTTCGCCGCCGCCGCCGCGAAGAAGGAGAGCAATATGCTGACCACTGATCTGAACCTGGACCTGACCATTTCATCTTCTTGGCTGTCCTGA
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| Protein seq | MGGFERRGVRQYNRSEVPRMRWTEEMHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRSGSSNSNHPVSLQKLTSATVNNISKREFVNSEDRCIYASGDRNTASSDKNTYTILRCGRSSMPSIEEIFRNWEQTRGRLLPWNSNVITTEQATTRASRQTTNYSKPLKQLTDCDLTLSIGQLWDDAAGSDADGSSTISEEVAAPSRDEAFVSSADDHFAAAAAKKESNMLTTDLNLDLTISSSWLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0670300 | RBH | 1.595647 | 0.353128 | 1.263435 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45890 | RBH | 1.005649 | 0.221350 | 0.303107 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0168200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0025880 | RBH | 0.139380 | 0.000000 | 1.391285 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0025690 | RBH | 0.0 | 0.781161 | 0.184557 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025870 | RBH | 0.573127 | 4.155628 | 2.846073 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025470 | RBH | 0.052054 | 0.042628 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0025950 | RBH | 0.768038 | 5.066904 | 3.521264 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0435800 | RBH | 1.9800525 | 2.33062 | 0.255339 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025420 | RBH | 0.069342 | 0.617324 | 0.290428 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0418700 | RBH | 1.8466765 | 13.078007 | 0.1690985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025830 | RBH | 0.090970 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0025830 | RBH | 0.000000 | 8.855944 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0025490 | RBH | 0.0 | 9.863461 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026100 | RBH | 0.000000 | 0.347977 | 1.489332 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0025740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G025580 | RBH | 0.114267 | 0.0 | 1.757107 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0025670 | RBH | 0.0 | 14.472473 | 0.000000 |
