Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os06g0575500 OGI:06062170 | 2/16 Nipponbare | IRGSP 1.0 | RAP-db Chr06:22356485-22359985
Gene Symbol -
DNA seq

TTGGCTTTAATTAACCAATCTTTCGCACAAATGAGAGCTTCAAGCATTTCAGGTGTTAACGAACTTCGTGTGTCACCAAGTATCCTGCCCCCACAACTGAATGCTGATTCGGAAGATACAGTGCTGAGGGGTATTGCTAGGAAATCTCTGGCCATAGATGACAATACTGGGAATTTTTGAGCATGTCTCTTCCACCAGTCCAAAACATCGAAACTCTCACTATCCTCCTCAACATCTTCTTCTAAATATATGGCAAATTCTGATTTCGTTTGCCGTGCAGTTCTCCTTCGAGACTTGTATAAAGCAAACTCTTCCTCGAGTTTTCTTTTCCCAAGAACAGGTGATCCAACACTGTTGCTGCCTTCACAAGAATGTGAAAGCATGTGTTCATCATTTCTTCTTACAAACCCTTCGTATTTTTCATAATAATCCTTCAACCAATCTTCAGCAGAACCCACTTTTTTGACAATCTCTGTCACACTGTTAGATGTTTTCTCATAAAAGAAATTCAAATAATCTCCTTTTCTTCTTGGATCTAACATTGTGGCAATGACAAGTGCAGAGTTAAACCCACTGTCCCAATATTTGACAAACTTTGAGAGCATAGCTGCAGCCAATACCTTTAAAATATCACTAGTCTGCCAATCAGGGTCATTCAATGCATGACGAATTTGTAGCACCAAGGGCAAGAACCTATGTGCTGTTGGTTTCCTATCTGCTGACACCGATAATGTAGCTTCTTCAAAAGCTTTAAGAAAAGCACAAATTGATTCAACTTTCTGCCATTCTAGTTCAGTAGGTGCAACTTCACCATGTTGATTTGCATAGCTATCCAGGACAGATATGTACATTAATCCTTCTACAATCATTTTATAGGTGGAATTCCATCTAGTCGGTGTATCAAAAGAAAAACTCAACTTCGAAGGAAGATTTTTCGAGTTTGCCATAGAATTGAAATCTTGCATTCTTGATACTGAAGAATCTAAATGCTTCAACAACTCACGTAGCTTGTGTATTATAGGTTTAATTATCTTCATACCATCCTGAACCAAAATATTTAGGATATGGGCACAACATCTAACATGCAAATGCTGACCCTCAAACATCAATGCATTCTTGTGATTCTTTATCAACTCTTGACATGCAGAATTGTTATTACTGGCATTATCTAAAGTTATAGTAAACAGTTTGCTCTAATGCCTCAATATGTCAAGCAACTCATTATAGCTTCTTCAATGGCGAATCCCGTGTGGGGATACTTCAATTCCTTAAAGCTTATAATTTTCTTCTTAATGTTAAACTCTCTATCAATATAGTGTGCTGTGACAACCATGTAGCCTATATTTTGAATTGAAGTCCACATATCGGATGTTAGACATACGTGCGAATCAAGATTATGTAATTCAGCATGCAAGTCTTCCCTCATTCGCTCATACAAGTTAAAGGCATCATCACGAAGTGTTTGACGCCCCACAACTTTGAAAGTTGGCTGCATGGACTCCACCCACTCCAAAAAATAAGGATCCTCAATTTTCTTGAATGGCACCTCTGCATGAATGAAGAATCTGACCATTAGCTCCCGGCTTCTCTTGGGAACAAACACGAAACCTTCCCCAGTCTGTTTCTTAATTGTTGCAAGGAAGTTGATTCTAGCATCACCATCAATAGCTGGACATGATTCGGCTATGTGATTAATAAGGTGACTTGTTCCTGACTTTTTGGTGGCTGTCAATCTTAAGCTACAATATTTGCATTGAGTCTTGGGGACACCATCTATCATTACAACCTCTTGCTGAAAGTGTTCCCATACTTTAGCTCTCTTACGTGTTCTTGAAGATTGATTATTATTTGGACTATTAGTACCTGAACTCTCTGACATTTGTATGGACATATTTATTATTGAGTTTGTTCAATTGTCTGCATAGAGGAAGAAATCTAAAATCAAGATAGTTGAAAGAACATGGTCTATAATTATTTTTTTCACACATTGTACATGTGCTACAATCTAAAAATTGCACACTAAAATTCGATTGACCATAGAATTAATTTGCATCTCAAAATCATATCAGGACTCAATCTGTAATGATATGTTAAATAATTTGCATTGGGAGATGAAGGGAACCTGCATTCACTATACCTCCTTATCTTCTTCTTGAAATCTTGGAACTCCTGCACATAAACCCATCGAAGATTGTAATCTTGAGCAAGTTAACTCCTCAGTAAAACCAACAAAAAAAACAAAATCTTATAGAAACTATCACACCAATCACACTGTTCACATACGTCGTGGTACTTGGGCTTCTTAGGGAGATTGGCGACGCGGCCGGACCGCCAGAGGAGGACATCCTCGCCAGCGCCCGGCGGCGCACGCACCTTCCTCTTCTTCTGCTTCACCTGTACCCGCAACCACCAAGATCAGGAAGAGACCCAAAAAAAAACACAAACAAAACAACCAGGATATATCAAAGACCGAGAAAAACCAGGGAAAAAGAAAAGCAATGGTGGTGGGGGAGGGAATCTGACCGGCGACGGCTTGGCGGCGGATTCGCGGACGGTGGCGGAGAGGTGGAGGAGGCGAAGCAAGGGGAGGGAGCGGCAGCGGCGGAAGGAGTGGAGCCGTGGACGACTGATGACGCTAGGTTTGGACTTTGGAGAGTACTGGACTGTCTAGTGCATCCAAAGAAATCCATGGACTGAATCCAATTTGGATCCAAAAATCAGAAACCAAAAACCAATCCAATCCAAACCGTTTCCACCTCCACCCTAACCAGTCCAGCCCATTAAACTCCTCAATCCATTTCCATCCATCCAAACTACACCCAAAGCTGAAACCAATCCATTGGGCCCATTTCAATCTAGCCCATTGGCAGGCTTACCTCCAACTTATAAAATCAGTACAAATGAAGTCCCTCGGCGATATTGAACCTGGTTTTGGCTGACGTGTCGTCGACATGGCTTATTTGACTAAGTCTTCGTACCACGTGGCAATGATGTGGCGCTTAAGTGGCAATCTAATCTAAAAAATAATAAAAACTGTGGGACCCACAAATCAGGCACATACAAAATAATAAAAAATGTGGGACCACGCGGGACCCACATGATGGGGTCATTCTTCTGTGTTCGCAACCGGAAATCCCCAATTCACCGGCGGATACGACGCATCTAGCCGGGGGCTCGCCGGCGAGAAGCAAATCGACACCGCCGCCAGAATGTGTAACGGAATCAGCTCGTGCAGGTAAGACGAGCGGGCGGTTTTCCGGCGGCCGCTGCCATCGTTCGGGCTCGAGCGGAGGGCCGCATGTCGGGCCACGCGGGCTTCTCTCCGTCGGGCGCCACCCTTCTCTCCATCCTCTCTCTCTCTCAGTTGCTTGGCGGTGGAGCGGGGCGGTCGGAGCAGGCGACGGGCGGGGCAGAGCGAGGTGGGCGGCGGCGTCCGGAGCAGAGCGGCACAGCCGCACAGGCGAGGAGCAAGGCGGCGGAGGACGACGACAGCGCCGACGC

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CDS seq

ACAAACTCAATAATAAATATGTCCATACAAATGTCAGAGAGTTCAGGTACTAATAGTCCAAATAATAATCAATCTTCAAGAACACGTAAGAGAGCTAAAGTATGGGAACACTTTCAGCAAGAGGTTGTAATGATAGATGGTGTCCCCAAGACTCAATGCAAATATTGTAGCTTAAGATTGACAGCCACCAAAAAGTCAGGAACAAGTCACCTTATTAATCACATAGCCGAATCATGTCCAGCTATTGATGGTGATGCTAGAATCAACTTCCTTGCAACAATTAAGAAACAGACTGGGGAAGGTTTCGTGTTTGTTCCCAAGAGAAGCCGGGAGCTAATGGTCAGATTCTTCATTCATGCAGAGGTGCCATTCAAGAAAATTGAGGATCCTTATTTTTTGGAGTGGGTGGAGTCCATGCAGCCAACTTTCAAAGTTGTGGGGCGTCAAACACTTCGTGATGATGCCTTTAACTTGTATGAGCGAATGAGGGAAGACTTGCATGCTGAATTACATAATCTTGATTCGCACGTATGTCTAACATCCGATATGTGGACTTCAATTCAAAATATAGGCTACATGGTTGTCACAGCACACTATATTGATAGAGAGTTTAACATTAAGAAGAAAATTATAAGCTTTAAGGAATTGAAGTATCCCCACACGGGATTCGCCATTGAAGAAGCTATAATGAGTTGCTTGACATATTGA

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Protein seq

TNSIINMSIQMSESSGTNSPNNNQSSRTRKRAKVWEHFQQEVVMIDGVPKTQCKYCSLRLTATKKSGTSHLINHIAESCPAIDGDARINFLATIKKQTGEGFVFVPKRSRELMVRFFIHAEVPFKKIEDPYFLEWVESMQPTFKVVGRQTLRDDAFNLYERMREDLHAELHNLDSHVCLTSDMWTSIQNIGYMVVTAHYIDREFNIKKKIISFKELKYPHTGFAIEEAIMSCLTY

Function Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0]

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os06g0575500 Os06t0575500-00 Chr06 22356485 22359985 - irgsp1_rep
CDS seq

ACAAACTCAATAATAAATATGTCCATACAAATGTCAGAGAGTTCAGGTACTAATAGTCCAAATAATAATCAATCTTCAAGAACACGTAAGAGAGCTAAAGTATGGGAACACTTTCAGCAAGAGGTTGTAATGATAGATGGTGTCCCCAAGACTCAATGCAAATATTGTAGCTTAAGATTGACAGCCACCAAAAAGTCAGGAACAAGTCACCTTATTAATCACATAGCCGAATCATGTCCAGCTATTGATGGTGATGCTAGAATCAACTTCCTTGCAACAATTAAGAAACAGACTGGGGAAGGTTTCGTGTTTGTTCCCAAGAGAAGCCGGGAGCTAATGGTCAGATTCTTCATTCATGCAGAGGTGCCATTCAAGAAAATTGAGGATCCTTATTTTTTGGAGTGGGTGGAGTCCATGCAGCCAACTTTCAAAGTTGTGGGGCGTCAAACACTTCGTGATGATGCCTTTAACTTGTATGAGCGAATGAGGGAAGACTTGCATGCTGAATTACATAATCTTGATTCGCACGTATGTCTAACATCCGATATGTGGACTTCAATTCAAAATATAGGCTACATGGTTGTCACAGCACACTATATTGATAGAGAGTTTAACATTAAGAAGAAAATTATAAGCTTTAAGGAATTGAAGTATCCCCACACGGGATTCGCCATTGAAGAAGCTATAATGAGTTGCTTGACATATTGA

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Protein seq

TNSIINMSIQMSESSGTNSPNNNQSSRTRKRAKVWEHFQQEVVMIDGVPKTQCKYCSLRLTATKKSGTSHLINHIAESCPAIDGDARINFLATIKKQTGEGFVFVPKRSRELMVRFFIHAEVPFKKIEDPYFLEWVESMQPTFKVVGRQTLRDDAFNLYERMREDLHAELHNLDSHVCLTSDMWTSIQNIGYMVVTAHYIDREFNIKKKIISFKELKYPHTGFAIEEAIMSCLTY

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0575500 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g37760 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os08g0393150 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0351800 RBH 0.028636 0.077369 0.0579085
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0317600 RBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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