Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0557400 | OGI:06059390 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:21272920-21274683 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAGATATGGCACCAATCAGTTGGTTACCAGACAAGTTAAGACTTTTTAGGTTCAGCAACAGCTTGATGGATGCAGGTATCGGACCAGTTATACGATTATCAGGCACTTTCAATTCAATTAGGTTGGCGAGCTTGCTCATGTCGGCCGGGAGCTCACCGTCCAGCTGGTTGTTCTCCGCCGTGAAAACAAGCAGACCGATCGCTGTCCTCGGGATAGAGCCGGAGAACATGTTGTTCCCCATCTCAATGTGCTGGATATTGGACGATAGCACGGCTGGCAGGACTCCGGTGAAGTTGTTCGGTATCATTACAATTTCTAGCTCTGGGAGCAGCCATATCTTCTCCGGGAAGTCGCCGGAGAATCGGTTGTTGTCGAGCACGAGTTCCTGCAGCAGAACACAGTCCCCGAGATTAGCCGGGAGATTGCGAGAGAAGTTGTTGTTGGAGGCGTAAATGCCGTAGAGCTCCCCGTTGGCGCATAGCGTTTCCGGGAGCGGACCGGAGAGGTTGTTGTTGGAGATACCGATGCTGCTGAGCGGTGAGTGCTTCCCGAGTTCTGGTGGCAGCTCGCCGAAGAGATTGTTGTTATCCAGCCAGATGGTGCTGAGCTTGGGAAGCAGCCCAATGCTCGCCGGGATCGTGCCGGTGAGGTTGTTCATGTAAAGAGAAAGCAAAGTGAGGTTCCTGAGGTTACCAAAATCCTCCGACATTTCTCCTCTGAGCTGGTTCATAGACAAGACGATCTCAATCAGATTCTCCGTCATGACGTTGCGTGGCAGCTCGCCCGTGAGGCTGTTGTTGAACAGGTAGAGGCACTCGAGCTTCTCATGCCGCCACACCCAGGCCGGAATTGCACCGGTGAGGTTGTTCGAAGACAGGTCGAGCAGCGTAAGCTCAGTGAGGCTGGAGAGCGCCTCCGGAATCTCGCCGATGATGCTCATATCTGACATCCAAAGATAGGTGAGCTTGGTCAGCTTGGCGAACGCCACCGGCACGGGCGCCGGCGCGAACGCGTTGTCGGCCAGCGTGAGGCACTCGAGGCCGGCGAGCTTGCCTATCTCGGCCGCCGGGTACACCCCTGTGAACCGGTTGCTGTTGAGGTGCAGCGACTTGAGCGCCGGGAGCGCCGCCACCCCGGGCGGCACGGCGCCGGAGAAGCTGTTCCACGACAGGTTGAGGTGCTCCATCACCGGGGACAGGTTGCCGATGTCACGCGGGAGGGCGCCGTGGAGGGTGTTGTTGGCGAGGTCGAGGAACCGGAGCTGGGAGCATCGGTAGAGCGTCGCGCCGGGGAAGGTGCCGGGGAGGCCGGTGTTGGAGAGGTCGAGCCGAGTCAGGTTCACGAAGTCGCACATCGCCGCGGGCAGCGTCCAGGTGAGCTTCATGTCAGACAAGGATAGCTCCGTCACCACCCCCCCACCGCCGCCGCCGTCAGAGCACGTCACCCCATCCCAGCTACAGTGGTCGCTGGCGGAGTCGGGATCCCACGACGCAAGGCGGCGGGGGTTCCCCCACCCTTTCCTGATAGCCACGAGCGTGTCGCGGTCGCCGGAGGCGAGCTGGGAGCTGCATTCGCCGGCGGAGAGGAGGAGGACGCCGCCGATTACAACTGGGAGGAGGCAAGTGTTCGACATTGTTCCCTTGCAAATGGCGGCCTGATCGAGGCAAAAGTTGTTCGGCTCGGCAGTTATAATCGGTACGTGTGTGTGAGTGCGTGACTTGAAATGAAGTGGAGCAGTCGCTGGTGAGGGCCCACCACTCAT
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| CDS seq | ATGAGTGGTGGGCCCTCACCAGCGACTGCTCCACTTCATTTCAAGTCACGCACTCACACACACGTACCGATTATAACTGCCGAGCCGAACAACTTTTGCCTCGATCAGGCCGCCATTTGCAAGGGAACAATGTCGAACACTTGCCTCCTCCCAGTTGTAATCGGCGGCGTCCTCCTCCTCTCCGCCGGCGAATGCAGCTCCCAGCTCGCCTCCGGCGACCGCGACACGCTCGTGGCTATCAGGAAAGGGTGGGGGAACCCCCGCCGCCTTGCGTCGTGGGATCCCGACTCCGCCAGCGACCACTGTAGCTGGGATGGGGTGACGTGCTCTGACGGCGGCGGCGGTGGGGGGGTGGTGACGGAGCTATCCTTGTCTGACATGAAGCTCACCTGGACGCTGCCCGCGGCGATGTGCGACTTCGTGAACCTGACTCGGCTCGACCTCTCCAACACCGGCCTCCCCGGCACCTTCCCCGGCGCGACGCTCTACCGATGCTCCCAGCTCCGGTTCCTCGACCTCGCCAACAACACCCTCCACGGCGCCCTCCCGCGTGACATCGGCAACCTGTCCCCGGTGATGGAGCACCTCAACCTGTCGTGGAACAGCTTCTCCGGCGCCGTGCCGCCCGGGGTGGCGGCGCTCCCGGCGCTCAAGTCGCTGCACCTCAACAGCAACCGGTTCACAGGGGTGTACCCGGCGGCCGAGATAGGCAAGCTCGCCGGCCTCGAGTGCCTCACGCTGGCCGACAACGCGTTCGCGCCGGCGCCCGTGCCGGTGGCGTTCGCCAAGCTGACCAAGCTCACCTATCTTTGGATGTCAGATATGAGCATCATCGGCGAGATTCCGGAGGCGCTCTCCAGCCTCACTGAGCTTACGCTGCTCGACCTGTCTTCGAACAACCTCACCGGTGCAATTCCGGCCTGGGTGTGGCGGCATGAGAAGCTCGAGTGCCTCTACCTGTTCAACAACAGCCTCACGGGCGAGCTGCCACGCAACGTCATGACGGAGAATCTGATTGAGATCGTCTTGTCTATGAACCAGCTCAGAGGAGAAATGTCGGAGGATTTTGGTAACCTCAGGAACCTCACTTTGCTTTCTCTTTACATGAACAACCTCACCGGCACGATCCCGGCGAGCATTGGGCTGCTTCCCAAGCTCAGCACCATCTGGCTGGATAACAACAATCTCTTCGGCGAGCTGCCACCAGAACTCGGGAAGCACTCACCGCTCAGCAGCATCGGTATCTCCAACAACAACCTCTCCGGTCCGCTCCCGGAAACGCTATGCGCCAACGGGGAGCTCTACGGCATTTACGCCTCCAACAACAACTTCTCTCGCAATCTCCCGGCTAATCTCGGGGACTGTGTTCTGCTGCAGGAACTCGTGCTCGACAACAACCGATTCTCCGGCGACTTCCCGGAGAAGATATGGCTGCTCCCAGAGCTAGAAATTGTAATGATACCGAACAACTTCACCGGAGTCCTGCCAGCCGTGCTATCGTCCAATATCCAGCACATTGAGATGGGGAACAACATGTTCTCCGGCTCTATCCCGAGGACAGCGATCGGTCTGCTTGTTTTCACGGCGGAGAACAACCAGCTGGACGGTGAGCTCCCGGCCGACATGAGCAAGCTCGCCAACCTAATTGAATTGAAAGTGCCTGATAATCGTATAACTGGTCCGATACCTGCATCCATCAAGCTGTTGCTGAACCTAAAAAGTCTTAACTTGTCTGGTAACCAACTGATTGGTGCCATATCTTAA
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| Protein seq | MSGGPSPATAPLHFKSRTHTHVPIITAEPNNFCLDQAAICKGTMSNTCLLPVVIGGVLLLSAGECSSQLASGDRDTLVAIRKGWGNPRRLASWDPDSASDHCSWDGVTCSDGGGGGGVVTELSLSDMKLTWTLPAAMCDFVNLTRLDLSNTGLPGTFPGATLYRCSQLRFLDLANNTLHGALPRDIGNLSPVMEHLNLSWNSFSGAVPPGVAALPALKSLHLNSNRFTGVYPAAEIGKLAGLECLTLADNAFAPAPVPVAFAKLTKLTYLWMSDMSIIGEIPEALSSLTELTLLDLSSNNLTGAIPAWVWRHEKLECLYLFNNSLTGELPRNVMTENLIEIVLSMNQLRGEMSEDFGNLRNLTLLSLYMNNLTGTIPASIGLLPKLSTIWLDNNNLFGELPPELGKHSPLSSIGISNNNLSGPLPETLCANGELYGIYASNNNFSRNLPANLGDCVLLQELVLDNNRFSGDFPEKIWLLPELEIVMIPNNFTGVLPAVLSSNIQHIEMGNNMFSGSIPRTAIGLLVFTAENNQLDGELPADMSKLANLIELKVPDNRITGPIPASIKLLLNLKSLNLSGNQLIGAIS |
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| Function | Receptor-like protein 52 [UniProtKB/Swiss-Prot:Q7FZR1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0557400 | Os06t0557400-00 | Chr06 | 21272920 | 21274683 | - | irgsp1_rep | ||
| CDS seq | ATGAGTGGTGGGCCCTCACCAGCGACTGCTCCACTTCATTTCAAGTCACGCACTCACACACACGTACCGATTATAACTGCCGAGCCGAACAACTTTTGCCTCGATCAGGCCGCCATTTGCAAGGGAACAATGTCGAACACTTGCCTCCTCCCAGTTGTAATCGGCGGCGTCCTCCTCCTCTCCGCCGGCGAATGCAGCTCCCAGCTCGCCTCCGGCGACCGCGACACGCTCGTGGCTATCAGGAAAGGGTGGGGGAACCCCCGCCGCCTTGCGTCGTGGGATCCCGACTCCGCCAGCGACCACTGTAGCTGGGATGGGGTGACGTGCTCTGACGGCGGCGGCGGTGGGGGGGTGGTGACGGAGCTATCCTTGTCTGACATGAAGCTCACCTGGACGCTGCCCGCGGCGATGTGCGACTTCGTGAACCTGACTCGGCTCGACCTCTCCAACACCGGCCTCCCCGGCACCTTCCCCGGCGCGACGCTCTACCGATGCTCCCAGCTCCGGTTCCTCGACCTCGCCAACAACACCCTCCACGGCGCCCTCCCGCGTGACATCGGCAACCTGTCCCCGGTGATGGAGCACCTCAACCTGTCGTGGAACAGCTTCTCCGGCGCCGTGCCGCCCGGGGTGGCGGCGCTCCCGGCGCTCAAGTCGCTGCACCTCAACAGCAACCGGTTCACAGGGGTGTACCCGGCGGCCGAGATAGGCAAGCTCGCCGGCCTCGAGTGCCTCACGCTGGCCGACAACGCGTTCGCGCCGGCGCCCGTGCCGGTGGCGTTCGCCAAGCTGACCAAGCTCACCTATCTTTGGATGTCAGATATGAGCATCATCGGCGAGATTCCGGAGGCGCTCTCCAGCCTCACTGAGCTTACGCTGCTCGACCTGTCTTCGAACAACCTCACCGGTGCAATTCCGGCCTGGGTGTGGCGGCATGAGAAGCTCGAGTGCCTCTACCTGTTCAACAACAGCCTCACGGGCGAGCTGCCACGCAACGTCATGACGGAGAATCTGATTGAGATCGTCTTGTCTATGAACCAGCTCAGAGGAGAAATGTCGGAGGATTTTGGTAACCTCAGGAACCTCACTTTGCTTTCTCTTTACATGAACAACCTCACCGGCACGATCCCGGCGAGCATTGGGCTGCTTCCCAAGCTCAGCACCATCTGGCTGGATAACAACAATCTCTTCGGCGAGCTGCCACCAGAACTCGGGAAGCACTCACCGCTCAGCAGCATCGGTATCTCCAACAACAACCTCTCCGGTCCGCTCCCGGAAACGCTATGCGCCAACGGGGAGCTCTACGGCATTTACGCCTCCAACAACAACTTCTCTCGCAATCTCCCGGCTAATCTCGGGGACTGTGTTCTGCTGCAGGAACTCGTGCTCGACAACAACCGATTCTCCGGCGACTTCCCGGAGAAGATATGGCTGCTCCCAGAGCTAGAAATTGTAATGATACCGAACAACTTCACCGGAGTCCTGCCAGCCGTGCTATCGTCCAATATCCAGCACATTGAGATGGGGAACAACATGTTCTCCGGCTCTATCCCGAGGACAGCGATCGGTCTGCTTGTTTTCACGGCGGAGAACAACCAGCTGGACGGTGAGCTCCCGGCCGACATGAGCAAGCTCGCCAACCTAATTGAATTGAAAGTGCCTGATAATCGTATAACTGGTCCGATACCTGCATCCATCAAGCTGTTGCTGAACCTAAAAAGTCTTAACTTGTCTGGTAACCAACTGATTGGTGCCATATCTTAA
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| Protein seq | MSGGPSPATAPLHFKSRTHTHVPIITAEPNNFCLDQAAICKGTMSNTCLLPVVIGGVLLLSAGECSSQLASGDRDTLVAIRKGWGNPRRLASWDPDSASDHCSWDGVTCSDGGGGGGVVTELSLSDMKLTWTLPAAMCDFVNLTRLDLSNTGLPGTFPGATLYRCSQLRFLDLANNTLHGALPRDIGNLSPVMEHLNLSWNSFSGAVPPGVAALPALKSLHLNSNRFTGVYPAAEIGKLAGLECLTLADNAFAPAPVPVAFAKLTKLTYLWMSDMSIIGEIPEALSSLTELTLLDLSSNNLTGAIPAWVWRHEKLECLYLFNNSLTGELPRNVMTENLIEIVLSMNQLRGEMSEDFGNLRNLTLLSLYMNNLTGTIPASIGLLPKLSTIWLDNNNLFGELPPELGKHSPLSSIGISNNNLSGPLPETLCANGELYGIYASNNNFSRNLPANLGDCVLLQELVLDNNRFSGDFPEKIWLLPELEIVMIPNNFTGVLPAVLSSNIQHIEMGNNMFSGSIPRTAIGLLVFTAENNQLDGELPADMSKLANLIELKVPDNRITGPIPASIKLLLNLKSLNLSGNQLIGAIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0557400 | RBH | 0.100366 | 0.170135 | 0.338275 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g36310 | RBH | 0.045283 | 0.092374 | 0.084260 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0227700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0019490 | RBH | 0.0 | 0.0 | 0.795836 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019360 | RBH | 0.0 | 0.0 | 0.634953 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019420 | RBH | 0.0 | 0.0 | 1.287541 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019220 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019620 | RBH | 0.0 | 0.0 | 0.715215 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0336700 | RBH | 0.483078 | 2.3404795 | 0.082032 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019100 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0310900 | RBH | 0.4137355 | 3.6910425 | 0.229435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019540 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019520 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019180 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0019870 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019320 | RBH | 0.074678 | 2.631249 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G019220 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019390 | RBH | 0.0 | 0.0 | 0.0 |
