Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0524900 | OGI:06053720 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:19434822-19439087 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAGGCAGCAGGCCATCCCACCGAGCGTACCATACACTACTGATACGCACACCTAGAGCAAGTTGAGCGAGCCATGGCGCTGGTGGCTGAGGCGATGGGGAGCCTTGTCCCCAAACTGACCGAGCTGCTCAAAGAGGAGTACAAGCTGCAAACGGGCGTTAGGGAGAAAATCAATTTTCTCAAGAGTGAGCTCGAGGACATGCATGCTGCCCTTCGCAAGGTTGGCAGCATGCATCCCGACCTGCTTGATGAGCAGGTCAGGATTTGGGCAAGCAAAGTCCGGGAGCTGTCGTATGACATGGAGGACGTCATCGACGCCTTTCTGGTGCGTGTAGATGGCAGTGTGCCTGCCAACCCCGGTTGCCTCGAACGGCTTGTGCACATGATGTGCGGCTTGTTCACCAAGATCAAGGTTCGCCATCAGATATCTGGCGTCGTCCAAGACATCAACACCAAACTAGAGGAGGTGTCCAAGGCGCGTGAAAGATACATAGCCTCTGATCTTCAGGCTAACCTAGCTGCCACACAATTGTCCACCCATGATCCTCGCATCCTGTTATCGAATACAGATGCGGCAAAGCTTGTTGGTATTGATGGCACAAGGAATGACATCATAAAGATCCTTTCCCTGGAGGGTGACAACTTGCCCTTGGGGAAGATGATAAAAGTTTCCATTGTTGGATCCGGGGGAATGGGCAAAACCACTCTCTCCAGAGCAGTGTACGACAGTGTTAAGGGGAAATTCCAATGCTCGGCATTTGTGCCAGTTGGCCAGAATCAAGACTTGAAGAGGGTCTTCATGGACGTTCTAAATGATCTTGACAAGGAAAAGTTCGACAATATCCATAGCACAAAAAAGGATGTAAGGTTACTCATGAACGAGGTCTACGACTTCCTTGAAAACAAGAGGTGCGCTCATGATTCTTATTCTAATTACCCTCGCATATTATACTTTCATACCATGGTACTATAAATCAAGCACGAGCAAATTTTAGAGTGCCAAAATGATGCCTCTATAGGAATAAATAGAAGAGCATGTGCTTTGGGTAAATGTATTCTAGGAAATTTTTGAAATTCCTCTAAAAAGTGTCTCTGCTCTGTAGAAATCCTGAATTTTGTTTTACTTGGTATATAAATCTTGATTTTAAAGGAGATTTAAACATCACCTCTAGATAATGTTTTTGTTGTATAAACTTCTTTTCTCTTTAGTTTTTACTATAGAAATTGCGGCAAAATGTTTTTGTATTCCATTTCGTTAACTTTTATTAGCTGGTAATTAAGTACTCTATTCGCAAGCTTGGAGGTTATTGGTAGGGGTTTCTCAATAACTGAAGGAAAACTAATTCGATCATCAACAAACATAACTCTTTAATTATATCTCAAACTAATAAATGGTGACAAAAGCATGTACGACCTAGTATGTGCCAAATTATAAGGAATCATTGTTTAAGAGAAGTCGGCATTTTCAACTTTTGACTAGTAAAAATTACTCTCAATATATATGTTCTTTAGTTTCACGATATTTGACATCAATAGATTTGTACTTTGAAGTACTTTCGTATGATGTTAATCTGGTAGTTGTTGATAATATATCATGTAAGAAATTAACGCCCAAACTTTTACATTAGGGACTGTGTAAAAACCTTGTAGACCTTATATTTTGAGGTGGAGTGGTATTGAACTACTCCGTATATTTTAAATGTTGGCTTGTTGATCTATGAATGGATAGGCAATCTGATTTTTGGGTTGTCCTGAAGGGCAAACTACTTTCAACAATCATCATAAAAAAATTCCACTTTGTCTCTCAAACTAATATAAGTGGTGACAAAAGCATGTACTACAAAATTGTATTTAAGGTCTGATAGAACAGATACTTAATTTAACTATAGTAAAAAAAACTAAGCATCATCATAACATTGTACATATTTACAACATTATAGTATTGCTCATGAAATCACTCGTGTATACGTTATGATGATGCATTTGTTGATCAGGGTTCAGAGATGAAACCAGTTTGTTTGTTTCCATTTTCCCGTTATTGGCACGTTTCTTGTATTTATAGGAGCAAAACGTGTATTTATACATTGCTAAACTCTTGCACTGTTTTCTTGATAGGTACATCATTGTTATTGATGACATTTGGAAATTCGATGCTTGGGACATGATTGCAAAAGTCCTGGGAGACAGTAGTTGTGGAAGTAGAGTGATCATAACTACTCGTATTTCTGAAATTGCTGAGGAAGTCGGTCATGTTTATGAAATAAAACACCTTTCTGATGTTGACTCGAGAAGGTTATTGCATAGAAGAATATTAAGTGGTGAAGACCAATGCCCCGATGATGATTATGATTTGGAAGAGGTTTGTGATGAAATTTTGAGGAAATGTGAAGGGGTACCATTGGCCATTGTTACAACGTCTAGTTTGTTGGAGAGTAAACCAAGGGAGGACTGGTCTGAGTTGTATCGGTCAATTGCTCTTGGCGCAAAAGACAACCGGCATGTGGATAATACTATGAAGATATTGTCTCTTAGTTTCTATCATTTGCCTTATCATCTAAGAACATGCTTATTGTACTTGAGCGCATTTCCAGAGGATTATTTAATTGGTAAACAAACATTGATATGGAGGTGGATAGGTGAAGGTTTTGTCTGTAAGGAAGAAGGAAGAGACTTATATGAGGTGTGAGAGGGTTACTTCAACGAGCTTGTAAAACGACGTATGATCATGCCAATAGAGGCAGAGAATGAAGACTACATACTAGGCTGTCGTGTTCATGACATGGTGCTCGGTCTGATCCGGTCATTGTCAAGCAGTGAAAACTTTGTCACCGTATTGGGTATAGAACAATACAACACATCTCACCAGGGCTATGGTCGAAGGATAGCCATCCTAAGCAGCAAGAATGGATTACCCCCAGTGGTGAACCTGGGAACGGCACAGTCACAAGTGACAATCCGGTCATTTAGTGCCAATGGTTTGTCATACATAGATGTTCTGCCAACACCGGCGAAATTTGAAGCTGTGCGTGTACTGGCACTGCAAAATTGTGAATCATTGCAGGACCTTCACGGCCTGGAGCATATTGGCAGTTTACTTCACCTACGATACCTTGCACTGACGTACACACCTCTTTCTGAGCTCCCAAATGGAATAGCGGGACGTCTGAGGTTCCTAGAGACGCTGGATCTGTGGGGGACTGGCATAGAGCAAGTGCCGTCGAGCGTGGGCAAGTTGACACAGTTGCTGTGCCTACAAGCCGATATTAAAACAAGGGTGCCGGATTGGATCGGGAACCTGACGTCCCTGCAAGAGTTGTGGATGTGGCCTGATGCTGCAGCTGCAGGGCAGTTTGTGAAGGAGCTGGGCAAGCTCGAGGATCTGAGGGTGCTCTGTACTCAGTTCGAGGGTGCCCCCGCAACGGACATTATCGAGTCTCTAGGAAGTCTGCCCAAGATACAGAAAATGCACGCCTTTGACCGTTGGGCAGCGGTGGGGCAGTGTGTGCCGTGGGAGCAAGGATTCGTCACTCCTCAATGCCTCCAGTTCCTGTGCCTGAGGTGTTTGACCTTCACCAGCCTGCCGCCGTGGATTAATCCGTCACTTCTGCCAAACCTCAGCAACCTGTCCCTGTCGTTGCAGGTTTTGCGACAGGCGGACATGGAAATCCTTGGCAGGCTGCGAATGCTCCGCAGACTCGATCTATTTGCGATGGGGAATGCAATTATAAGAATTGGGATTCATGACACCCTGTTGTTCCGCAAGTTGAGATTCTGCACGATGGCCACGACCTCCATCCGGTTTGTACCACCTCCTGCTGCTAGTGCTGCCGTCACAACACCTGTCTCAGTCATGCCATACCTGGAATTACTTCACTTCAGCTTGGACGTGCACTTCTTCAAGGACAGGAAAATTGCTTTTGACATTGGCTTGGAGCACCTCCCGAGTTCTCTTCGCACAGTAAAGGTTTTTGTGCTCTGCCACTTAGCCAAAGAAGAAGACGTCAAGGAGGCGGAGGCGGCATTGTTGCACTCCGTCAGCATCCATCCCAGCCGTCCCGCCCTTCAACTCGAAAGATTGGCCGAAGATAAAATGCTCCCTTCTCACCTCAAAGATGATCAGTGAACATCGTAGCCATCACATATCTCCCCAGTCACTCTATCTGTTGGAAATCATTCATGTGATGTACTAAGATAATGTACCCTGTATTGCATGCATAGTTTCTTGGTTCGTTGTGTAATATCAATGAATAAGTCTATTTTGCTTCC
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| CDS seq | ATGGCGCTGGTGGCTGAGGCGATGGGGAGCCTTGTCCCCAAACTGACCGAGCTGCTCAAAGAGGAGTACAAGCTGCAAACGGGCGTTAGGGAGAAAATCAATTTTCTCAAGAGTGAGCTCGAGGACATGCATGCTGCCCTTCGCAAGGTTGGCAGCATGCATCCCGACCTGCTTGATGAGCAGGTCAGGATTTGGGCAAGCAAAGTCCGGGAGCTGTCGTATGACATGGAGGACGTCATCGACGCCTTTCTGGTGCGTGTAGATGGCAGTGTGCCTGCCAACCCCGGTTGCCTCGAACGGCTTGTGCACATGATGTGCGGCTTGTTCACCAAGATCAAGGTTCGCCATCAGATATCTGGCGTCGTCCAAGACATCAACACCAAACTAGAGGAGGTGTCCAAGGCGCGTGAAAGATACATAGCCTCTGATCTTCAGGCTAACCTAGCTGCCACACAATTGTCCACCCATGATCCTCGCATCCTGTTATCGAATACAGATGCGGCAAAGCTTGTTGGTATTGATGGCACAAGGAATGACATCATAAAGATCCTTTCCCTGGAGGGTGACAACTTGCCCTTGGGGAAGATGATAAAAGTTTCCATTGTTGGATCCGGGGGAATGGGCAAAACCACTCTCTCCAGAGCAGTGTACGACAGTGTTAAGGGGAAATTCCAATGCTCGGCATTTGTGCCAGTTGGCCAGAATCAAGACTTGAAGAGGGTCTTCATGGACGTTCTAAATGATCTTGACAAGGAAAAGTTCGACAATATCCATAGCACAAAAAAGGATGTAAGGTTACTCATGAACGAGGTCTACGACTTCCTTGAAAACAAGAGGTACATCATTGTTATTGATGACATTTGGAAATTCGATGCTTGGGACATGATTGCAAAAGTCCTGGGAGACAGTAGTTGTGGAAGTAGAGTGATCATAACTACTCGTATTTCTGAAATTGCTGAGGAAGTCGGTCATGTTTATGAAATAAAACACCTTTCTGATGTTGACTCGAGAAGGTTATTGCATAGAAGAATATTAAGTGGTGAAGACCAATGCCCCGATGATGATTATGATTTGGAAGAGGTTTGTGATGAAATTTTGAGGAAATGTGAAGGGGTACCATTGGCCATTGTTACAACGTCTAGTTTGTTGGAGAGTAAACCAAGGGAGGACTGGTCTGAGTTGTATCGGTCAATTGCTCTTGGCGCAAAAGACAACCGGCATGTGGATAATACTATGAAGATATTGTCTCTTAGTTTCTATCATTTGCCTTATCATCTAAGAACATGCTTATTGTACTTGAGCGCATTTCCAGAGGATTATTTAATTGGTAAACAAACATTGATATGGAGGTGGATAGGTGAAGGTTTTGTCTGTAAGGAAGAAGGAAGAGACTTATATGAGGTGTGA
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| Protein seq | MALVAEAMGSLVPKLTELLKEEYKLQTGVREKINFLKSELEDMHAALRKVGSMHPDLLDEQVRIWASKVRELSYDMEDVIDAFLVRVDGSVPANPGCLERLVHMMCGLFTKIKVRHQISGVVQDINTKLEEVSKARERYIASDLQANLAATQLSTHDPRILLSNTDAAKLVGIDGTRNDIIKILSLEGDNLPLGKMIKVSIVGSGGMGKTTLSRAVYDSVKGKFQCSAFVPVGQNQDLKRVFMDVLNDLDKEKFDNIHSTKKDVRLLMNEVYDFLENKRYIIVIDDIWKFDAWDMIAKVLGDSSCGSRVIITTRISEIAEEVGHVYEIKHLSDVDSRRLLHRRILSGEDQCPDDDYDLEEVCDEILRKCEGVPLAIVTTSSLLESKPREDWSELYRSIALGAKDNRHVDNTMKILSLSFYHLPYHLRTCLLYLSAFPEDYLIGKQTLIWRWIGEGFVCKEEGRDLYEV |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0524900 | Os06t0524900-01 | Chr06 | 19434822 | 19439087 | + | irgsp1_rep | ||
| CDS seq | ATGGCGCTGGTGGCTGAGGCGATGGGGAGCCTTGTCCCCAAACTGACCGAGCTGCTCAAAGAGGAGTACAAGCTGCAAACGGGCGTTAGGGAGAAAATCAATTTTCTCAAGAGTGAGCTCGAGGACATGCATGCTGCCCTTCGCAAGGTTGGCAGCATGCATCCCGACCTGCTTGATGAGCAGGTCAGGATTTGGGCAAGCAAAGTCCGGGAGCTGTCGTATGACATGGAGGACGTCATCGACGCCTTTCTGGTGCGTGTAGATGGCAGTGTGCCTGCCAACCCCGGTTGCCTCGAACGGCTTGTGCACATGATGTGCGGCTTGTTCACCAAGATCAAGGTTCGCCATCAGATATCTGGCGTCGTCCAAGACATCAACACCAAACTAGAGGAGGTGTCCAAGGCGCGTGAAAGATACATAGCCTCTGATCTTCAGGCTAACCTAGCTGCCACACAATTGTCCACCCATGATCCTCGCATCCTGTTATCGAATACAGATGCGGCAAAGCTTGTTGGTATTGATGGCACAAGGAATGACATCATAAAGATCCTTTCCCTGGAGGGTGACAACTTGCCCTTGGGGAAGATGATAAAAGTTTCCATTGTTGGATCCGGGGGAATGGGCAAAACCACTCTCTCCAGAGCAGTGTACGACAGTGTTAAGGGGAAATTCCAATGCTCGGCATTTGTGCCAGTTGGCCAGAATCAAGACTTGAAGAGGGTCTTCATGGACGTTCTAAATGATCTTGACAAGGAAAAGTTCGACAATATCCATAGCACAAAAAAGGATGTAAGGTTACTCATGAACGAGGTCTACGACTTCCTTGAAAACAAGAGGTACATCATTGTTATTGATGACATTTGGAAATTCGATGCTTGGGACATGATTGCAAAAGTCCTGGGAGACAGTAGTTGTGGAAGTAGAGTGATCATAACTACTCGTATTTCTGAAATTGCTGAGGAAGTCGGTCATGTTTATGAAATAAAACACCTTTCTGATGTTGACTCGAGAAGGTTATTGCATAGAAGAATATTAAGTGGTGAAGACCAATGCCCCGATGATGATTATGATTTGGAAGAGGTTTGTGATGAAATTTTGAGGAAATGTGAAGGGGTACCATTGGCCATTGTTACAACGTCTAGTTTGTTGGAGAGTAAACCAAGGGAGGACTGGTCTGAGTTGTATCGGTCAATTGCTCTTGGCGCAAAAGACAACCGGCATGTGGATAATACTATGAAGATATTGTCTCTTAGTTTCTATCATTTGCCTTATCATCTAAGAACATGCTTATTGTACTTGAGCGCATTTCCAGAGGATTATTTAATTGGTAAACAAACATTGATATGGAGGTGGATAGGTGAAGGTTTTGTCTGTAAGGAAGAAGGAAGAGACTTATATGAGGTGTGA
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| Protein seq | MALVAEAMGSLVPKLTELLKEEYKLQTGVREKINFLKSELEDMHAALRKVGSMHPDLLDEQVRIWASKVRELSYDMEDVIDAFLVRVDGSVPANPGCLERLVHMMCGLFTKIKVRHQISGVVQDINTKLEEVSKARERYIASDLQANLAATQLSTHDPRILLSNTDAAKLVGIDGTRNDIIKILSLEGDNLPLGKMIKVSIVGSGGMGKTTLSRAVYDSVKGKFQCSAFVPVGQNQDLKRVFMDVLNDLDKEKFDNIHSTKKDVRLLMNEVYDFLENKRYIIVIDDIWKFDAWDMIAKVLGDSSCGSRVIITTRISEIAEEVGHVYEIKHLSDVDSRRLLHRRILSGEDQCPDDDYDLEEVCDEILRKCEGVPLAIVTTSSLLESKPREDWSELYRSIALGAKDNRHVDNTMKILSLSFYHLPYHLRTCLLYLSAFPEDYLIGKQTLIWRWIGEGFVCKEEGRDLYEV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0524900 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g33360 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0017940 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0017770 | RBH | 0.0 | 0.263731 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0017870 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027400 | SBH | 0.099196 | 0.064882 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0017950 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0302700 | RBH | 0 | 0.084806 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017480 | RBH | 0.0 | 0.077375 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0277800 | RBH | 0.0335185 | 0.019854 | 0.0118265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0017820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0017760 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017460 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018160 | RBH | 0.000000 | 0.186498 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0017600 | RBH | 0.0 | 0.878441 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G017600 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0017770 | RBH | 0.0 | 0.000000 | 0.0 |
