Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0474600 | OGI:06020700 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:15905914-15906632 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATAGAATCCATAATAATAGCAAATATTCAAATGCATTACACATAAAGTACACTTCCATAGTTCATGCATAAACACTAATTAAATACATTTTTTTCACATAAATCTAGCTAGCTGGTTTTTCTTTTCCTAGGAGCTAATTTCTTCGCGGCTTGGTCCCGAGGGGGAGGGACAGAAGATTGCACTCGTTGTGGGACCTTGTTGATGTTGTATTCGCCAGTTGGGTCTACAACATGATGACAGATGAACCCGCAAAACTCGTCAGTGAGAGCTTTGAAGACGTGTGGTAGAATTTCACTTGTATCGAGACCCAATTTCTACAACACAAGGATGGAAGCACGTAGAAATTTACTTAGTACTTAAATAGAATTGCTTAATGTTATGACTTAGGTACCTGAAGCATGTCATACCTCGGCATTGCGGTGATTGTATCCATCCTCTACAAAATATAGCATGTACCGCATGACGTAGAATCCGCAGAGGTCGGTGGCCTCTAGTTGACGAAGGATATATTTATGTTCGAAAATCCGAAATTCAGTTGCATCAATCTTGCATCTCCCATACGATCTTCCGGACCTACGGTACTTCTTATATGCCCTATTTAGTGCACTTAAAATAGTTTGGTACTTGTCTATCCCTCTCAGGCTATCATATATGCAAATCGAACTGTCGTCGATGTTGATTACGAGGAGGATCCAATGATGGCTACACATAGTGACAA
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| CDS seq | ATGTGTAGCCATCATTGGATCCTCCTCGTAATCAACATCGACGACAGTTCGATTTGCATATATGATAGCCTGAGAGGGATAGACAAGTACCAAACTATTTTAAGTGCACTAAATAGGGCATATAAGAAGTACCGTAGGTCCGGAAGATCGTATGGGAGATGCAAGATTGATGCAACTGAATTTCGGATTTTCGAACATAAATATATCCTTCGTCAACTAGAGGCCACCGACCTCTGCGGATTCTACGTCATGCGGTACATGCTATATTTTGTAGAGGATGGATACAATCACCGCAATGCCGAGAAATTGGGTCTCGATACAAGTGAAATTCTACCACACGTCTTCAAAGCTCTCACTGACGAGTTTTGCGGGTTCATCTGTCATCATGTTGTAGACCCAACTGGCGAATACAACATCAACAAGGTCCCACAACGAGTGCAATCTTCTGTCCCTCCCCCTCGGGACCAAGCCGCGAAGAAATTAGCTCCTAGGAAAAGAAAAACCAGCTAG
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| Protein seq | MCSHHWILLVINIDDSSICIYDSLRGIDKYQTILSALNRAYKKYRRSGRSYGRCKIDATEFRIFEHKYILRQLEATDLCGFYVMRYMLYFVEDGYNHRNAEKLGLDTSEILPHVFKALTDEFCGFICHHVVDPTGEYNINKVPQRVQSSVPPPRDQAAKKLAPRKRKTS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0474600 | Os06t0474600-00 | Chr06 | 15905914 | 15906632 | - | irgsp1_rep | ||
| CDS seq | ATGTGTAGCCATCATTGGATCCTCCTCGTAATCAACATCGACGACAGTTCGATTTGCATATATGATAGCCTGAGAGGGATAGACAAGTACCAAACTATTTTAAGTGCACTAAATAGGGCATATAAGAAGTACCGTAGGTCCGGAAGATCGTATGGGAGATGCAAGATTGATGCAACTGAATTTCGGATTTTCGAACATAAATATATCCTTCGTCAACTAGAGGCCACCGACCTCTGCGGATTCTACGTCATGCGGTACATGCTATATTTTGTAGAGGATGGATACAATCACCGCAATGCCGAGAAATTGGGTCTCGATACAAGTGAAATTCTACCACACGTCTTCAAAGCTCTCACTGACGAGTTTTGCGGGTTCATCTGTCATCATGTTGTAGACCCAACTGGCGAATACAACATCAACAAGGTCCCACAACGAGTGCAATCTTCTGTCCCTCCCCCTCGGGACCAAGCCGCGAAGAAATTAGCTCCTAGGAAAAGAAAAACCAGCTAG
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| Protein seq | MCSHHWILLVINIDDSSICIYDSLRGIDKYQTILSALNRAYKKYRRSGRSYGRCKIDATEFRIFEHKYILRQLEATDLCGFYVMRYMLYFVEDGYNHRNAEKLGLDTSEILPHVFKALTDEFCGFICHHVVDPTGEYNINKVPQRVQSSVPPPRDQAAKKLAPRKRKTS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0474600 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g28030 | RBH | 0.927351 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0472200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0015230 | RBH | 0.195650 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0014950 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0015210 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0015030 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0015150 | RBH | 0.529449 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0205500 | SBH | 0.08449 | 0.009639 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0014640 | RBH | 0.052893 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0289400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0015130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0015090 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0014790 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0015410 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0014870 | RBH | 0.097656 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G014760 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0015090 | RBH | 0.585311 | 0.0 | 0.0 |
