Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0267900 | OGI:06025160 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:8913931-8917864 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACTAAATTTTTTTCCATTTTAACATCCAGAAAATCAACAACGGTAGTCATAGTACATATTATCAAATAATTTCATGAGAAGGAGCACAGCTAGAACTATTATTCCTATGAACCAATTTCTAATGTCATTGGTCTCCTTTTCCTGCTTGGACAACTTCTTGAGTGAAATTTCCATGTCTAAAAACGGTCCGCCATTTCCAGCTCTAGCTTCATACTAAAGATCATCTTTAGTCTCGGTTTTTAGTGGAACCGGAACTATTGTGGATTTCGGCCGACGGACCAAAGATGGTTTCTCCACCAGTGTACCCAGATTGACATGTTCCAGCAAGTGCCAAAGCTGCTTGAATGTCTTTTGTACTCTTGGATGCCAGATCTACTCCAATCAGAGTGTCATCCTCCTTAAAAAAACAGGACTGTTATATTGACATGCATGACTAAATTAAAAGAAAATTTATTTATACTGAATTACCACTAAAAAAATGACATATGCTTGGAATGAAACTTACCTATCAACACACTTCAGCGTACAACTTATGTAATACCACTACGCATCGGCAATATCCTTGATCACCGGCATCGCAGCAACAGCAAACGAAAAGTCCTAGAGCTTCAGAGGACAACTGGAGCACCACCACTATGCCGCTGTGGCCGCCGACAGCTGCCAAAGTCCCCACCGCCGCCACCACATCACCGGCTCCAACGACTCCATGACTACCACGATACCGCGGCCACCACCACCTCGCTCCACGACCACCTCGTCACTGCAGCCGCCAAAGCCCCCGCCGCTGCCACAACATCGCCAGCTCTAACGACTCCATGACCACCTCAACACCGCGGCCGCCACCACCTCGCTGCCACGGCCGCTCACGCACCAGCCGCCGCCAACACCACCTCACCGCCACGGCCGCCACCACCTCGCCGCCACAGTTGCCCATGGACAAGCCACCGCTGTTACCACTCATCGGACAGAGGGGATTCAAGCACCTTCCACCTCTCTCAACACTGCCGGTACCACCTCATGGGCAAATATGTATCTGGAGGTACCACACCTTGCCAATCGTCTGATCGGATAGAACGAAGGGCAGAGATTTGTTACCGGGCTACCTGCTGAACAGAAGAAAATCTCTTCATAGTATCAGAAGAAAGTCTGCTCATGCACCTCGGCAGATCCCGCCATGGCTAACCCCAGACCTGCTCCCGCTTTCGCACTCGTTTCTAACATCAAAAACCACATCCACCGCTCACCCTCCAACTCTCTACATGGTGTGAACTTTTCTTTGTTCTTCTCGGCCATTTCAATCTCAAGGCACACGTCGACGGCTCACCCAAACCAGCCAACGCTCAATTATCAACAGAAGGCTCTGGGTGCCGCAGCGTGAAGAAAAATACCCCGGAAGTCTTTAGAAATCAGCTATGCTTTATCCATATAAGTGATAGGTAAATTGAAGCAGTTCCTTCTTGTCCTTATTAGTCAGCAGGCACTTTTTAAAGGGCTGCTCTACTTCGTGCAGCTTTGGGCAGATCGATATGCTCACGAACTGCATGGATGAAAGAACGTGTGATCCTCCAATGGATGACAGCTCCGAGCACCGCTCGAGAAGCAGGCATTTGACCTAAAGATTTGTGCCCAGCGGAATGGACTCCATGCCATCGCAGCTAGACAAATGCAGGATGTTGAGAGAGGTGAGGCTCTGTAGGCAGGCCGGGAAGTCAACCTTACGGCCAGACACAATAGAGAGTCGTCGGAGTGAGGGTGGCAAAACCATTCCCTGCGGGCATAACAATTTGCAGTGGATTTTCAGATCTTGTAGGTATTTGAATCCCACGAAACTATCGACAGGCATTGACAGTCCTAGATCGCTGGAGCTGTCGATCTCTATGGACTTGATGGATGGCAAGTATTCCGGGGACAAGCACCGATCAAGATTCTGCAGGTCCTCACAACTGTAAAGACCTATATAGGTGAGTCCACTAAGACATGTTGTGCCATTGCTGCTACTGCTACTGCTGCTTGCATGCTGCATCGTTTCACCACCAGTCGAACCACCAAGAATTGTTACTGTTTTCAGCCAAATATTTCCTGATAGCATTAGAAGTTCGAGGGAAGGAAACGATGGGATTGACAGATTTTTCAAGACGCCACAATGGAAAAGCACCAGGCTCCTTAAAGTCAGCAGGCTCTCTAGTCTAAACCAACTAGGAGAAAAGCTATCACCCCCAAAACCTTGGACTGTAAGGTGTTCAATTCTTGGTGGAGGATGCAAGGCTTCGAGCACTCCATTCTCACTACTCTTCACTAAACTTGTGACTTTCTTTCGCCATTGTAGAACTAGATTCTGGAGGTACCGTTTTTCAACAAGGCTAGCCTCAGCGGCCTCTTCCTCGTTCTTAACATTACAAATAGAACTAATAAGTAGAGCTACACTGAGCTGATTCATGCCCCTCAACTCACCAATTTTCCGCCCATCCCCTGTTTCAACTATAAAATATTGCAAGTTCCGTAGACGAGACAGATTTCCAAGCCTACTTATCTCTGATAACTTTGGAGAGCAACCTGTTGGCAATGCTAGACGATGCAAGTTGATTAGCTTTATGACATCCGGACTAATTGCTTTTAGACTTGAACCATTTGCATCAACAACCTATAGGCTGTAAAGGCACCAGAATTTCTCCGGCAATTCTTGTACACCGCTATAAGAAATATCAAGATAACGGAGACTGTTCAACTCGCCTATGCTCTCAGGTAGCTTGACCACCGTGCAACCCTTTAGGCTCAAATATAGGATGTTGGAGAGCTGATTGAACCAGGTAATCTCAACATTGAAATTGATTCCAAACCTAAGTGAATGTAATTTGTTCAAATCCTGAATGCCTCTCATTCCGCTCTTCAGGGATTCATCAGCGACCTCGACTGACATATGGCGAACTGCATATAGCATTCTCCTCTCATTCCGAGACCTCAAATCTTGCATCAAGAGGCATTCATCCACAGAAACGGATTGCGCCATATCATGGATCAAGTCATGCATGACCTATCTAGTTCGATTAGGATACTTGGGGTCGGTTTGAAAAAGAAACCTGCTCCTCAAATCATCCAAATACCTAATCCCCATATCTTCAAGACGTGTGCTTCCACTTGACACAACAAAGCCCTCGGCCACCCAAATGTCAACGATCTCATCTCGTTCAAAGCTGTAATCTTTTGGAAACATGCAGCAAAATGCAAAGCATCTCTTAAGTTCTTGTGGGAGATATAAGTAGCTCAGTTGGAGGGCCGGTAATATCTCATTCTCTCGATGTGGCAGCTCCCACAATTCACTGTTCCGAACTGTCTCCCAATGTTGCACGGTCAGCTCCATATTCAACAAACGTCCAATAGTTTTGGCAGCCAAAGGAGATCCACATAACCTAGAGGCAATGTTGTGACCAATATCTTGCAATTGAGGATATGATTCTGGACGCTCTTCTCCAAATGAACACTTGCTGAAGAACTCCCAAAATATATCTCTATCCAAGCCTTCGAGTTGGATAGGCTTACAATTGTTGGTGGCAACACGATCAGCAACAGTTGTAAATCTTGTAGTTACTAAGATCATACTGCCTTTAGGTCCGTTCTTGAATGGTGCATAAAATGACTCCCACTCGTCAATAGCTTCTTGCCAAATGTCATCCAACACCAAAAGGAACTTTCGTCTCCCTAGCTGCTCCATCATTTCCACCTGAAGAGCATCTAAACTGAACAGTGGCTTATACTCTTCCTTGGTGAAAGACTCAATGATCTCTTTTGTTATTCTTCTCTTGTCAAAGAGGTCTGAAACACAGACCCATACCCTCCTCTTGCCAAAGTGAGCTTGCACCCTTGGATCATTGTAGATGAACTGAGCCAGGGTAGACTTCCCCACCCCACCAATGCTAAAAATCGGCAAGACAGAAA
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| CDS seq | TCTGTCTTGCCGATTTTTAGCATTGGTGGGGTGGGGAAGTCTACCCTGGCTCAGTTCATCTACAATGATCCAAGGGTGCAAGCTCACTTTGGCAAGAGGAGGGTATGGGTCTGTGTTTCAGACCTCTTTGACAAGAGAAGAATAACAAAAGAGATCATTGAGTCTTTCACCAAGGAAGAGTATAAGCCACTGTTCAGTTTAGATGCTCTTCAGGTGGAAATGATGGAGCAGCTAGGGAGACGAAAGTTCCTTTTGGTGTTGGATGACATTTGGCAAGAAGCTATTGACGAGTGGGAGTCATTTTATGCACCATTCAAGAACGGACCTAAAGGCAGTATGATCTTAGTAACTACAAGATTTACAACTGTTGCTGATCGTGTTGCCACCAACAATTGTAAGCCTATCCAACTCGAAGGCTTGGATAGAGATATATTTTGGGAGTTCTTCAGCAAGTGTTCATTTGGAGAAGAGCGTCCAGAATCATATCCTCAATTGCAAGATATTGGTCACAACATTGCCTCTAGGTTATGTGGATCTCCTTTGGCTGCCAAAACTATTGGACGTTTGTTGAATATGGAGCTGACCGTGCAACATTGGGAGACAGTTCGGAACAGTGAATTGTGGGAGCTGCCACATCGAGAGAATGAGATATTACCGGCCCTCCAACTGAGCTACTTATATCTCCCACAAGAACTTAAGAGATGCTTTGCATTTTGCTGCATGTTTCCAAAAGATTACAGCTTTGAACGAGATGAGATCGTTGACATTTGGGTGGCCGAGGGCTTTGTTGTGTCAAGTGGAAGCACACGTCTTGAAGATATGGGGATTAGGTATTTGGATGATTTGAGGAGCAGGTTTCTTTTTCAAACCGACCCCAAGTATCCTAATCGAACTAGATAG
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| Protein seq | SVLPIFSIGGVGKSTLAQFIYNDPRVQAHFGKRRVWVCVSDLFDKRRITKEIIESFTKEEYKPLFSLDALQVEMMEQLGRRKFLLVLDDIWQEAIDEWESFYAPFKNGPKGSMILVTTRFTTVADRVATNNCKPIQLEGLDRDIFWEFFSKCSFGEERPESYPQLQDIGHNIASRLCGSPLAAKTIGRLLNMELTVQHWETVRNSELWELPHRENEILPALQLSYLYLPQELKRCFAFCCMFPKDYSFERDEIVDIWVAEGFVVSSGSTRLEDMGIRYLDDLRSRFLFQTDPKYPNRTR |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0267900 | Os06t0267900-01 | Chr06 | 8913931 | 8917864 | - | irgsp1_rep | ||
| CDS seq | TCTGTCTTGCCGATTTTTAGCATTGGTGGGGTGGGGAAGTCTACCCTGGCTCAGTTCATCTACAATGATCCAAGGGTGCAAGCTCACTTTGGCAAGAGGAGGGTATGGGTCTGTGTTTCAGACCTCTTTGACAAGAGAAGAATAACAAAAGAGATCATTGAGTCTTTCACCAAGGAAGAGTATAAGCCACTGTTCAGTTTAGATGCTCTTCAGGTGGAAATGATGGAGCAGCTAGGGAGACGAAAGTTCCTTTTGGTGTTGGATGACATTTGGCAAGAAGCTATTGACGAGTGGGAGTCATTTTATGCACCATTCAAGAACGGACCTAAAGGCAGTATGATCTTAGTAACTACAAGATTTACAACTGTTGCTGATCGTGTTGCCACCAACAATTGTAAGCCTATCCAACTCGAAGGCTTGGATAGAGATATATTTTGGGAGTTCTTCAGCAAGTGTTCATTTGGAGAAGAGCGTCCAGAATCATATCCTCAATTGCAAGATATTGGTCACAACATTGCCTCTAGGTTATGTGGATCTCCTTTGGCTGCCAAAACTATTGGACGTTTGTTGAATATGGAGCTGACCGTGCAACATTGGGAGACAGTTCGGAACAGTGAATTGTGGGAGCTGCCACATCGAGAGAATGAGATATTACCGGCCCTCCAACTGAGCTACTTATATCTCCCACAAGAACTTAAGAGATGCTTTGCATTTTGCTGCATGTTTCCAAAAGATTACAGCTTTGAACGAGATGAGATCGTTGACATTTGGGTGGCCGAGGGCTTTGTTGTGTCAAGTGGAAGCACACGTCTTGAAGATATGGGGATTAGGTATTTGGATGATTTGAGGAGCAGGTTTCTTTTTCAAACCGACCCCAAGTATCCTAATCGAACTAGATAG
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| Protein seq | SVLPIFSIGGVGKSTLAQFIYNDPRVQAHFGKRRVWVCVSDLFDKRRITKEIIESFTKEEYKPLFSLDALQVEMMEQLGRRKFLLVLDDIWQEAIDEWESFYAPFKNGPKGSMILVTTRFTTVADRVATNNCKPIQLEGLDRDIFWEFFSKCSFGEERPESYPQLQDIGHNIASRLCGSPLAAKTIGRLLNMELTVQHWETVRNSELWELPHRENEILPALQLSYLYLPQELKRCFAFCCMFPKDYSFERDEIVDIWVAEGFVVSSGSTRLEDMGIRYLDDLRSRFLFQTDPKYPNRTR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0267900 | RBH | 2.335468 | 2.046540 | 0.155964 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g15750 | SBH | 0.0 | 0.141558 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0268500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0010930 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0010790 | SBH | 0.457554 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0010780 | SBH | 10.271176 | 0.975264 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0010810 | SBH | 1.071697 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0010920 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0148800 | RBH | 0.5473485 | 1.0248155 | 0.0046045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0010500 | SBH | 0.372078 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0145700 | RBH | 0.0562605 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0010930 | RBH | 0.529298 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010780 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010820 | RBH | 2.339646 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0010980 | RBH | 1.182575 | 0.073818 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010710 | RBH | 0.785643 | 0.373404 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G010570 | RBH | 0.050706 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0010880 | RBH | 0.0 | 0.0 | 0.0 |
