Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0225900 | OGI:06018020 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:6503743-6507744 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACAAAATGGAAAGAATATGGGATTTATTTTGTTGTAACAGCATATTATCTGTTGTCTCGGGACAAAATTTCTTCTTCGGCTATTTACAGTTTGGTCAGGTTTCAACAGAGGGATGCATCAAAATTACAACAGGAGGACGGAGCACTTGTTCAAAAAGGCTCAGGAAAATTTGGTGTGATTAGGTGTTTCTCTATTGATACAGGGATCACATAACTCTGAAATAGGATATAGGTGAAAAGGAAAGGAGGCGGGCACATCAGAGAAAGAAGCGCCTATTGCTGGCTTCCTATGGCTAAAGTTGGAGCTCGCTAATGATGCAGATGATACAATGTGAGAACTAAAAATACTGACAGAACAATGTTAGCTGCCGAACCCAAATGGTGATTTACTCCTGCTTCCACCTTCCCCGTACTGCTCGTTCCATTTTCGTAACTCGTTCATGCTCGTGGCGTCAAAAGCGACGGATGGACTTACCTGTATAGGGGGCAAAAGAACCAGATAAGTATCACAAAAGCACAGCACAGTGAAACATTGGAGATGCAGTAGCCAGTGGTTAGGTTATACCTTTGCTTTTGCTTGCACAAAATCCTCCAACTTTAAGGGCCTCAAAGATATTTTTGTGCCACTAACGCCTCCCTAAAAAAATGGAGATCGTATGAACAAACGTGGGGACACCACATCCAAGATGATGAACAAAGCTTAAGAACGGAAGTACAAATATTTACAAGCATGGACAAATCACCTAGCTTGAAGTATAAATATTTACAAGCAAGGACAAATCACCTTTTCTTCTTCTAGAAGCTCATGAACTGGTCTGTACGCAGCTGCGATGCATAGGTTCTGCAGAAAGTGCCACGTTAGTCTCCATACACAAAACAAACATGGCTAGTAGATGTTTTCTTGGAAAGCAGGAGGTTAAGAGTTGAACCGCTATGGAGGGCTTAGCAATACCTTCAAGTCACTACCAGAGTAACCCTCAGTTGCATTGGCTAGTTCGTCAAATCTGAAATCAGATTCCAGGTTTTCTTTTGCAAGTAAAATCTTCAGAATTTTCATTCGATTCTGTGAGTCCGGAAGGTCAACGTATATCCTACATATCACATTGACAGACCGTCATTTTGATATACTGACCAAGCTTAGATAATTTTGGTAAAATCACACGATTGCAGATCTTACCGCCTAGGTAAACGCCGAATTACTGCATCATCTAGATCAAATGGACGGTTTGTTGCACCAAGAATAAGGATCCTTTGGTTCTCTTTGGATCTTAAACCATCCCAAGCTGCCATGAATTCATTCCGCATTCTTCTTGTTGCTTCGTGTTCAAATGCACCACCTCTTGCACCAAGTAAGCTATCAACCTGTCATTATCAAATACAAATTGCATTAGAATAAAGAGATTTCGTATGAAATTGGAAACCACAAGATAATCTCCTGAATATAAATGACTATGCCAGTTTCATTAACGGAAGCAAAATTTACCTCGTCCACAAATATGATAACAGGTGCTAGCCGACTAGCAAAGGAGAAAAGGGCCTTAGTGAGCTTCTCAGCGTCTCCAAACCACTGTAAACAGAGAAATATATGGACAAGGGCTCCATGAGAAAAGTTTTATGCAAGGGATGGACTGCTAAGTTCTGTGTTGCCTCCTAATTTCTTTCAAGTGGCAGGCACACACTCGCAAAAGATGGGGAAAAACGTTAAATAAAAGCTGTACTGAAATTGGTGTGGGAGCTAGTAGAGATTTTGATTCAGTGCAGACTGCAGCACCAGCACAGTTCATATAGTCAGTAATTTGTCCAGTCACCATTTATAAAAGAATGTTTGGCATTATCATGTCTTTCATTCACTTAAAAACTTTGATGAAGGGGAGAAAACTAAATACAGAAGGGCATAGAAATCTACCTATGGTGAAATAAATAAAAGATTTAACATGAGTACATGACTCCAAGTCCAAACAGTTAAAAAGAATCAAAAGAGTCAGACAGAACCTTTGATGTAAGATTAGAACCAGTTATGCTGATAAAATTTGCTCCAGCTTCTGTTGCAAGTGCCTTTGCCAAAAGTGTTTTCCCTGTCCCTGGAGGTCCAAAAAGCAATATACCTTTGCAAGGCTAAACAAAGGTCCATACAAACATGTCATGTTAAAATTACAACAATGAAAATTTTATGCATATGCAAAACAATTAACAGAACATAACAATAAGGAAGTACACCCAACAAAGCAAAGCTAAATATCCAGATTTTGTTTCATACTCCAATTTTTGCAAGGCATGGATCGACTTGTTGCAGCCATTTATTTAGCAGTTTGACCATAAGTTTTTCTTGGAATATGTTGTTACTAAGAATATCATGTACAATGTACAAATCTACTAATACCACTTCTGTATGATTAAACCTATATATAGTTAGCCTGGTAAAAATTTGCGAAGTTTGAATTTTGAAATGAATGCCTATCATACAATTTTTGACACACAGGGCACAGTTGAACTAAGAAAGATGGTCATGAGACCTTGAACTTCAGGTTTGCCAACTTGGCAAATACAGTGGAATCAAGCAGTATGGCATAAAACAATAATCTCATTAACATCTCTAATGATTTTCGCATTTTCATCTGTGATAGCAACACTTGCGCCTTGACGTGCAACAGCCATAGCAAGTAGGTTCAAACTCGACCTGGTGGGGGTGGGGGGGGGGGTTAAGACAACCCCGGGGTATTTTGCTAAGAAGACCTTCTCATGCAGGTCAAGAAAACCCCCGAACCCCTGCCCCAACCTTACACAGCAGCACCATAGCCCATGTGAGAACGACCAATGACCTGGCCAGGCCTTAGACCTGTGCTTCGGTGTAGGACAGACGAGGGGAATTTTTTTAACCCCAAGCTGAAATTCACTCCCACGGGGAGTCGAACCCAGTACCTAAGGAGTGCTACTAGAGCCACCTAACCAACTCACCTAGAGGAAATCAGGAACAAAGTTTATGCTATAAAGGGACAAAACTATTTAGAGACCTGATTTAAGGATTTATTTTCCATCCAATTAACATTTTGTTGTTTTTGCGTCTAGTGCAAACATGTAATAGTACTGTAGACTCACTATGACCCATTATATCATATGTTCAAGACATAACTTGTAACAGGTAAAGCAGATAATACAGAAAAGACGTCCCCATTAAAATTGGCATCAGATAATCGCTGATTATAAAACAACATCAAGCAATAGTGACATAGCTGCAAACAAACTTGTAGAGTCACGAGTCAGAACACCAAAGGCCCCAACAAGTTACAAGCTTCTTTATATAGAAAGGGATAGCACTAAATTTTTTGTACATTAGAACATAACATTCCATGATTTTAAGCTATGGATTGGTAACATACTCCAAGGTATTTTATACACCCAAGTGGTAACAATGAAGCAAAAACACTATATACAAGATCAAAAAAAGGTGCAGGTAGACACGATAACAAAAACAGGAAGGCATACCCTTAACAAGTTCCCATGAGAAAAAAGCTCTGGTCTCCTCATTGGAAGAGTAACAAGTTCATCCAGTGTCTTCTTAACATCCTCAAGAGCACCAATATCATCAAATTTTACTCCAATTTCATTGGGAGGTACAACTGCTGAAATGAAATTGCGCTCGAATTCATCTTTTGCCAAAATCTGCAGTGAAGATCCCCCTTGAGCTTGGAAGTAACGCAGTACAATGACTTGCCAGCAGGACAAATAAGACTAGCAACTAATAGAAAAGTTAAACAACTAAAGCTAAATTACCTTAATTTTTTCAGAAGACTTCCTCGATGAAGCCTCCTGTGCCTTTAACCTTCCAATTGCTAGGTCCAGACTTCAAAAAAAACAAGAAAGCATTGTCAGTGCAGAGCCAACAGAGATGACCGAATCCCAAAATCAATGATGAAATACCTCTCACGGGGAATGATCAGCCTGTCACCCTTTATAGAGGGACACGTCACTGATGATAAATAGTGACTTCTAGCCCATCCAATG
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| CDS seq | ATTGGATGGGCTAGAAGTCACTATTTATCATCAGTGACGTGTCCCTCTATAAAGGGTGACAGGCTGATCATTCCCCGTGAGAGTCTGGACCTAGCAATTGGAAGGTTAAAGGCACAGGAGGCTTCATCGAGGAAGTCTTCTGAAAAAATTAAGATTTTGGCAAAAGATGAATTCGAGCGCAATTTCATTTCAGCAGTTGTACCTCCCAATGAAATTGGAGTAAAATTTGATGATATTGGTGCTCTTGAGGATGTTAAGAAGACACTGGATGAACTTGTTACTCTTCCAATGAGGAGACCAGAGCTTTTTTCTCATGGGAACTTGTTAAGGCCTTGCAAAGGTATATTGCTTTTTGGACCTCCAGGGACAGGGAAAACACTTTTGGCAAAGGCACTTGCAACAGAAGCTGGAGCAAATTTTATCAGCATAACTGGTTCTAATCTTACATCAAAGTGGTTTGGAGACGCTGAGAAGCTCACTAAGGCCCTTTTCTCCTTTGCTAGTCGGCTAGCACCTGTTATCATATTTGTGGACGAGGTTGATAGCTTACTTGGTGCAAGAGGTGGTGCATTTGAACACGAAGCAACAAGAAGAATGCGGAATGAATTCATGGCAGCTTGGGATGGTTTAAGATCCAAAGAGAACCAAAGGATCCTTATTCTTGGTGCAACAAACCGTCCATTTGATCTAGATGATGCAGTAATTCGGCGTTTACCTAGGCGGATATACGTTGACCTTCCGGACTCACAGAATCGAATGAAAATTCTGAAGATTTTACTTGCAAAAGAAAACCTGGAATCTGATTTCAGATTTGACGAACTAGCCAATGCAACTGAGGGTTACTCTGGTAGTGACTTGAAGAACCTATGCATCGCAGCTGCGTACAGACCAGTTCATGAGCTTCTAGAAGAAGAAAAGGGAGGCGTTAGTGGCACAAAAATATCTTTGAGGCCCTTAAAGTTGGAGGATTTTGTGCAAGCAAAAGCAAAGGTAAGTCCATCCGTCGCTTTTGACGCCACGAGCATGAACGAGTTACGAAAATGGAACGAGCAGTACGGGGAAGGTGGAAGCAGGAGTAAATCACCATTTGGGTTCGGCAGCTAA
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| Protein seq | IGWARSHYLSSVTCPSIKGDRLIIPRESLDLAIGRLKAQEASSRKSSEKIKILAKDEFERNFISAVVPPNEIGVKFDDIGALEDVKKTLDELVTLPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSNLTSKWFGDAEKLTKALFSFASRLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDSQNRMKILKILLAKENLESDFRFDELANATEGYSGSDLKNLCIAAAYRPVHELLEEEKGGVSGTKISLRPLKLEDFVQAKAKVSPSVAFDATSMNELRKWNEQYGEGGSRSKSPFGFGS |
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| Function | Protein MSP1 [UniProtKB/Swiss-Prot:P28737] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0225900 | Os06t0225900-01 | Chr06 | 6503743 | 6507744 | - | irgsp1_rep | ||
| CDS seq | ATTGGATGGGCTAGAAGTCACTATTTATCATCAGTGACGTGTCCCTCTATAAAGGGTGACAGGCTGATCATTCCCCGTGAGAGTCTGGACCTAGCAATTGGAAGGTTAAAGGCACAGGAGGCTTCATCGAGGAAGTCTTCTGAAAAAATTAAGATTTTGGCAAAAGATGAATTCGAGCGCAATTTCATTTCAGCAGTTGTACCTCCCAATGAAATTGGAGTAAAATTTGATGATATTGGTGCTCTTGAGGATGTTAAGAAGACACTGGATGAACTTGTTACTCTTCCAATGAGGAGACCAGAGCTTTTTTCTCATGGGAACTTGTTAAGGCCTTGCAAAGGTATATTGCTTTTTGGACCTCCAGGGACAGGGAAAACACTTTTGGCAAAGGCACTTGCAACAGAAGCTGGAGCAAATTTTATCAGCATAACTGGTTCTAATCTTACATCAAAGTGGTTTGGAGACGCTGAGAAGCTCACTAAGGCCCTTTTCTCCTTTGCTAGTCGGCTAGCACCTGTTATCATATTTGTGGACGAGGTTGATAGCTTACTTGGTGCAAGAGGTGGTGCATTTGAACACGAAGCAACAAGAAGAATGCGGAATGAATTCATGGCAGCTTGGGATGGTTTAAGATCCAAAGAGAACCAAAGGATCCTTATTCTTGGTGCAACAAACCGTCCATTTGATCTAGATGATGCAGTAATTCGGCGTTTACCTAGGCGGATATACGTTGACCTTCCGGACTCACAGAATCGAATGAAAATTCTGAAGATTTTACTTGCAAAAGAAAACCTGGAATCTGATTTCAGATTTGACGAACTAGCCAATGCAACTGAGGGTTACTCTGGTAGTGACTTGAAGAACCTATGCATCGCAGCTGCGTACAGACCAGTTCATGAGCTTCTAGAAGAAGAAAAGGGAGGCGTTAGTGGCACAAAAATATCTTTGAGGCCCTTAAAGTTGGAGGATTTTGTGCAAGCAAAAGCAAAGGTAAGTCCATCCGTCGCTTTTGACGCCACGAGCATGAACGAGTTACGAAAATGGAACGAGCAGTACGGGGAAGGTGGAAGCAGGAGTAAATCACCATTTGGGTTCGGCAGCTAA
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| Protein seq | IGWARSHYLSSVTCPSIKGDRLIIPRESLDLAIGRLKAQEASSRKSSEKIKILAKDEFERNFISAVVPPNEIGVKFDDIGALEDVKKTLDELVTLPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSNLTSKWFGDAEKLTKALFSFASRLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDSQNRMKILKILLAKENLESDFRFDELANATEGYSGSDLKNLCIAAAYRPVHELLEEEKGGVSGTKISLRPLKLEDFVQAKAKVSPSVAFDATSMNELRKWNEQYGEGGSRSKSPFGFGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0225900 | RBH | 1.404257 | 0.817555 | 2.358843 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g12160 | RBH | 0.908005 | 0.553983 | 0.584365 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0749150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008600 | RBH | 0.469536 | 3.132538 | 2.757881 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0008460 | RBH | 0.080150 | 0.876566 | 1.488599 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0008470 | RBH | 0.520273 | 5.276272 | 5.401687 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0008590 | RBH | 0.044041 | 0.459601 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008580 | RBH | 3.775912 | 9.575722 | 9.998668 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0108200 | RBH | 3.740178 | 12.4645335 | 11.412899 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0008190 | RBH | 0.239042 | 0.321828 | 0.787964 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0108700 | RBH | 4.9869545 | 16.00261 | 10.7418475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0008670 | RBH | 0.115404 | 0.235575 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0008470 | RBH | 0.142157 | 11.741285 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0008530 | RBH | 2.749060 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0008590 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0008390 | RBH | 0.029964 | 4.985390 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G008300 | RBH | 0.343681 | 5.645348 | 3.276383 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0008590 | RBH | 2.142447 | 10.489040 | 5.507257 |
