Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0181700 | OGI:06011750 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:4040784-4041763 | ||||||||
| Gene Symbol | ERF55, OsERF#055, OsERF055, OsERF55, AP2/EREBP#146, AP2/EREBP146, ERF2, OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100 | ||||||||||
| DNA seq | ACTGATCACCTCGACCTCACTTCCTCCTCAACCTCGAGCTCACTCCTCGCTCTCCCGCCGCGAGCGCGCGCTCTCTCTCGCCGCGACCACGCGCAATCCGTCGCCGAGCTCGAGGACGTCGGCAATGGCGCGGCCGCAGCAGCGGTATCGCGGCGTGCGGCAGCGCCACTGGGGCTCATGGGTCTCCGAGATCCGCCACCCTCTCCTGTAATTCATCGTCGCCATCCTCCTCCTGATTGATTGATTCTTTGTTTCTTCCTCGCGTAGATTGGTTTCTTGGCCATGGCGGTTTGATTTCTTGGTTGGGCTTGCAGGAAGACGAGGATCTGGCTGGGCACGTTCGAGACGGCGGAGGACGCGGCACGCGCGTACGACGAGGCGGCGCGGATCATGTGCGGCCCGCGCGTGCGCACCAACTTCCCCCACGACGTCGCCGACGAGGCCGCGCCGCCGCCGCCGCCGCACAGCGCCGCCGCAGCCTCCTCGTCGTTCCTCTCCGCGGCGCTCGTCGCCAAGCTCCACCGCTTCAACCTCGCCTCCGTCCAGGCTGCGCAGCGCGGCAACAGCAACGACGACGACTCCACCACCTCCTCCTCCGCCGCCGCGTCGTCGCGCGCCGTGATTCCGTCCCTTCCCGCCGCCGCCGGCGCATTGGGCAATGCGGCGGCGACGGCGGAGTGGAGCGGCGGGTTCCTCGAGGAGCAGTACGTGGACCAGATGATCGAGGAGCTCCTCGACTCCAACTTCTCCATGGAGATCTCCTGCTGATGTGCCCTGTTCATCTACCTGTTCTTCTCTGCTCCATCTCCTGTTTCTTTCTCTCTCTCTTTTTTTTCTTTCTTTTTTTTTGTTTTTTTAGTTTAGTAAGCTATGTGAGGAAGAACTCTGATCGAGGTTAGTTTGGTCACAGTGAGTTCTGGAGCAGCTTGTGTATACGGTAGCATCATTTAGAGCATAATAGGGTTGCAGTTGAGACCTTC
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| CDS seq | ATGGCGCGGCCGCAGCAGCGGTATCGCGGCGTGCGGCAGCGCCACTGGGGCTCATGGGTCTCCGAGATCCGCCACCCTCTCCTGAAGACGAGGATCTGGCTGGGCACGTTCGAGACGGCGGAGGACGCGGCACGCGCGTACGACGAGGCGGCGCGGATCATGTGCGGCCCGCGCGTGCGCACCAACTTCCCCCACGACGTCGCCGACGAGGCCGCGCCGCCGCCGCCGCCGCACAGCGCCGCCGCAGCCTCCTCGTCGTTCCTCTCCGCGGCGCTCGTCGCCAAGCTCCACCGCTTCAACCTCGCCTCCGTCCAGGCTGCGCAGCGCGGCAACAGCAACGACGACGACTCCACCACCTCCTCCTCCGCCGCCGCGTCGTCGCGCGCCGTGATTCCGTCCCTTCCCGCCGCCGCCGGCGCATTGGGCAATGCGGCGGCGACGGCGGAGTGGAGCGGCGGGTTCCTCGAGGAGCAGTACGTGGACCAGATGATCGAGGAGCTCCTCGACTCCAACTTCTCCATGGAGATCTCCTGCTGA
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| Protein seq | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCGPRVRTNFPHDVADEAAPPPPPHSAAAASSSFLSAALVAKLHRFNLASVQAAQRGNSNDDDSTTSSSAAASSRAVIPSLPAAAGALGNAAATAEWSGGFLEEQYVDQMIEELLDSNFSMEISC |
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| Function | Ethylene-responsive transcription factor ERF003 [UniProtKB/Swiss-Prot:Q94AW5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0181700 | Os06t0181700-01 | Chr06 | 4040784 | 4041763 | + | irgsp1_rep | ||
| CDS seq | ATGGCGCGGCCGCAGCAGCGGTATCGCGGCGTGCGGCAGCGCCACTGGGGCTCATGGGTCTCCGAGATCCGCCACCCTCTCCTGAAGACGAGGATCTGGCTGGGCACGTTCGAGACGGCGGAGGACGCGGCACGCGCGTACGACGAGGCGGCGCGGATCATGTGCGGCCCGCGCGTGCGCACCAACTTCCCCCACGACGTCGCCGACGAGGCCGCGCCGCCGCCGCCGCCGCACAGCGCCGCCGCAGCCTCCTCGTCGTTCCTCTCCGCGGCGCTCGTCGCCAAGCTCCACCGCTTCAACCTCGCCTCCGTCCAGGCTGCGCAGCGCGGCAACAGCAACGACGACGACTCCACCACCTCCTCCTCCGCCGCCGCGTCGTCGCGCGCCGTGATTCCGTCCCTTCCCGCCGCCGCCGGCGCATTGGGCAATGCGGCGGCGACGGCGGAGTGGAGCGGCGGGTTCCTCGAGGAGCAGTACGTGGACCAGATGATCGAGGAGCTCCTCGACTCCAACTTCTCCATGGAGATCTCCTGCTGA
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| Protein seq | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCGPRVRTNFPHDVADEAAPPPPPHSAAAASSSFLSAALVAKLHRFNLASVQAAQRGNSNDDDSTTSSSAAASSRAVIPSLPAAAGALGNAAATAEWSGGFLEEQYVDQMIEELLDSNFSMEISC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0181700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g08340 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0797100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005780 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005630 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005590 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0005800 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005670 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0070000 | RBH | 0.395918 | 0.227576 | 0.5420175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0005530 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0069200 | RBH | 0.263806 | 0 | 1.6348295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0005860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0005700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0005750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G005470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0005720 | RBH | 0.0 | 5.256720 | 0.0 |
