Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0163900 | OGI:06009390 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:3241818-3246312 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCATTTTACTCCAGTTTAATTAATGGATAGAGCTAGCAAACCATAACATATGGGGCTAGAGGAGCAACCAAACGTAGCGTGCTTATTCAAATACATGAAAATTGAAACAAGTGAACAAGTTTGAAAATGGTAATTATGCAACTGAGTAAAAATGGTAGAGATGAAACACAAATGCTGTGCCAACTCCAGGACCAAGCCAAGGTAGCCATTGATGCAAAAGCCATCGTCCTGTTCCATTGAGCAAGGAAGACCAATCAGTGGTGTTCATGGAAAAGGTAAATGAAACAAGGAGCAAGCTGGGGAGCAAATTATATTATCTGGCAACAAATTATCACTTAGAAGGAAGGAGCAAGTTAATTACCTGCGGCTCATTGACGCTTCTGTTTTTCGCTGCTCCACCTCTAGTGCTACTGAATGTATGTCGCAGTCGTGAGTGAGGGACGGTTGGGATGTGTGTTCGCAATGTTCAAGATTTTTTCTTTCAGTTTTGAGACCGCATCTAGATTGCCAGAAATCCAGGCATGGACTCTGCAGAGGGTGTTGGGGAGGTGCTGGAAGGAATCATTCTCACCAACCACATTCAATCTAATGCCAATGTGGAGGTCCTTCAGATTAGGCATGGAATCATGCATAAACAACACGTTGCAAAGAAAGGCAAACTTGAGACATCGGAAACCATGGTTGCTGATGGTGAGCCATGATCCTTGTGTGTCTGAAAAGGGAAGGGCAAGATATTCGAGAGCTTTCAGGTCTCCAAGCATTTCGAGATCGTCCTGAGTAACATATGCTTTACTGAGCTCTAATTTCTCAAGCTTGGCAGCAAGGCGAATCCAACTTGGAATGGTTGTCGTCTTGAACCCGTTTACAATGCTCAATCTCCGGAGGTTTTTTAGGGAAGGGAACCACGAATCAAACAAGAAGCGTTTTGCAGCTATATCCGAATAAGAATAATAAAGAGACAGATCTAGATATTGAAGGCTATGTCTGTCCAGTGCATTAAGTGAGGAGATGAAAATCTTCTCGTAGCTCTTTTCATGCTCGGCATGGGCCTCATCAGAATCTCTAACATGGTCAGGAATCCAAGATACCGCTAGTACTCTCAGCTTGGTAAGCTCACCTAGCTCCTTCAAAAAGCTTACCGGTTGATTGAAGGGCAAGAGACCTGTTAGCTGCTCCAATGCTTGCATCTTGCTAACACCTTCTGCAGGGAACATGACGTCAGAATTGACAGACAGACGAACCAATTGCTGAAGTAGAACAATGGATGGTGGTAATTCTTTAACTTGAGTATCTAGTATATCTAATGTCTCCAAATGCTGGAGACGCCCAATATTGGCGGGGAGCACACTTACTCCTGTTCCGCTAATGCTCAGATACCTCAAATAGGCTAACTTTTCTATATTAGCAAGATGGTTGTTTGTCAATGATTCGCACCCTTCTAGATCCAGTACTCTTGCAACTTTAAATTCCGATAGAGGATGCAATCCTGTGCAGTCCATAGAACAAGCAAGTGACCGGACATGAGGCTTAATCGACTTCATGCTCGAGGCAAATTTCTCTTGGCAGTAGCTACCCTGGAGAGACATGCGACGAACCTTGCAGCAGTTGCTATGCTGCAAAGGTACAGGACCAGACGGATCCAACAAGGTCATAAAGTTCTCCTCTACTGATTTGGACACTATGAAATTAAGAATGACGTCGTGAACACGGCAGCTCAGCACCTCACCGTAGTGCTCATTCCATGGTTGGATCAAGCTCTGGTTTATCAGCACATTGAAATACCTCAGCCCTGCTTCATATAGATTTTCTCCTGGTCTTGCATTGATAAATCCTTCTGCAATCCATCTGCTTACCAAACGGGTCTTTCCAATTTCACAATCTTCTGGGAATGCACTCAAGTATAACAGGCAACTTCTTAAATCATGTGGAAGGTTGTAATAACTGAGTGCTAACACTGATTGCATGGTCTCAAGATCCTTATTTCCTGGTATTGGAGAACTGATAATTTTTTTTACCTCATTCCAGTGATATAACGATTGACGATCAGCCAAGAAGCTGGATATGGAAATGATTGCTAGGGGTATACCATCACATCTTTCCAGTATCTCTTTAGAAGCTTGTTCAAATTCAGGAGGACATTGCTCTTCACAGTCAAAAATTCTTTTGTAAAACAACCTTTTGGAGTGAGCGCCATCGAGATGTTTCATCGGATAAACAAAACCACCATGAGAAGATGAAGATGACATCGCCACTTCTTTCACACGTGTCGTCAAAATTATTATGCTACCAGGACTAGTTTTGACCAATGCTTCTCCAATGAAGTTCCATGGTTCTGGGTTCCATATATCATCCACTACGACAATATACCTGCCACATGTAATTTTAATTTTATCATGGAAAAGAAAATTAAAGTATAATTGATGTATAGATTTTCAAAGGACCGAAATTATAAATGATACCCTTGCAAAGAACCAGAATTAGATTTTCAAAGCATGCTCACATGTTTGGTTGGGTGTTGATTTACAAAATTCTTGAAATTGGTTTTACCCTTTGTATTACGAGGTAACTATAGCTTACATAACATTAAACAATAGTTTACTCTGGTTCGCAACAAGTATACATCAGGGTTCTGTGTCCCAGAAAAGAAAAACAGTGCTTAGAATTACAACATCAGCATTTGAGCTATCTTTGCCTCACAGCAAAATACTTAGGAAAGCTTGGCCCACTCAGTGCTTAGAACAAAATACATCAAACTGGGGCACTTGTTTTTATCTCATGTTGAAAACAAACCAAATAATTGTTTGTTTTGAGCCTACTATTTTCTGTAACTGAACTAATAAAATGCAAAAGGATTTATTTTTTCTTTGTTTTTGTCCAACTATTTTTGTAACTGAACTAGTAGGTCTTCTTGGCAGTGTTTATTGTCTATTAATCGTAGCACATAATAAAATTAATGCCTCCTTCAGTCTTTAGCTAAGTTCCAAGTTTTGTATAGTTGAAGGATGTTTAGGAAAGTGTTGATGAAAACTTAAGAATATATAATTTTGAGTTCATGCATAGGGCTTGAAGCAAAGTTAAAGATAAAAAAATAGACTATAATCTATATTTTCTATAAAGTTACAACCTACTAAACATCTAAAGCTTAACATGCAAGCACAGTACGCATAGTAGTTATTAGTACACTCTAAAGGTTAAAACGCAAGCATGCAACATTAACCTACTAAGAACCTACTCCCTCCGTTTCAGGTTATAAGACTTTCTAACATTGTCCATATTCATATAGATGTTAATGAATCTAATCACACATATATGTCTAGATTCATTAATATATATATAAATGTGGGCAATGCTAGAAAGTCTTATAATATGAAAAGGAGGAAGTAATATAAAACCCATCATGTATGCATAGCAATTACTCCTACAATTCATTATATTGTAAACCTCAACATACAAGCATACTAACTTATATTTCTCACATTATTTTCACAATATTTAACCAAAAAAAATCTATCCTTAAAAAAGATAAGTTCTACAACATTCAACATAAATCCATCCTTATATTCTGCAGCAAAGCGAGAAAGGTCAGCGGAAAACAAAACGGAACATGAGAGTGCACCTTTTTTGCTTGAGATATTCCCTAAGATTATCCACCAGATTTGCTACATCATCCGACATGTTTGTTGACTTGTTGCCAACTTGATTAGAAATGTTGAGGATAAGCTCCTTTATGTTCGGTTTCTGAGACACCGAAACAAAGGCCTTGCACTCGAATTCCCCTTTGATTTTGTCGTACACTTGTTTGGCCAGAGTGGTCTTGCCCAAGCCCGCACACCCGACGATGGATACCATCCTGACACCGTGCTGCACCGATGACAACGACTCCTGCTACTGCTCCATCAACCGACTGATGATGTCATCCCTAGGGCCATCGATGCCGACGAGGTGCTTCGTTTCCGTCCAGAGCGCGCACAGCCGGACATCAACCTTGGTCGAGGAGGAAGCATCCGAGCTAGTTGGTACAAGTCCATGAAGAGTGTACCTGTTACGCCGCTCGCTGACCTCCACGACACGGGCCTTGAGCTTCTGGATCTGACTCGCGATCTGACGGAACGCTCCGATCTTCTTGGCCATGCGCGCCACCTTGGCAGCGAGTCCGCTTTCGCCGGCGCTGCCGCGGAGGCGGTGGACGGAGAGGTCGATGCAGTCCTCGATGTCGTAGGCGAGATCCCGCACCCTGTCCCTCCAGTCTCTGCTGAGCTCGTCGAGCTGATCCACATCTGCTAGCTTTTGCAGAACTATATTCATGGTGCTCAGCTCGGACCGGAGGAAGACGAGGTCGTCGCGGACTCCCTTGGCGTGCTTGTACTCCTCGCCGAGGAAGGCCGTGAGCTTTGCGAGGACGGAGTTCATCACTCCGGTCGCCGCGCTCACCAGGACGCCCTCCATGCCGACTCATGCGTCAGATCGAAGCCAATGGCCTTGCTCTCTCGCTCTC
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| CDS seq | ATGGAGGGCGTCCTGGTGAGCGCGGCGACCGGAGTGATGAACTCCGTCCTCGCAAAGCTCACGGCCTTCCTCGGCGAGGAGTACAAGCACGCCAAGGGAGTCCGCGACGACCTCGTCTTCCTCCGGTCCGAGCTGAGCACCATGAATATAGTTCTGCAAAAGCTAGCAGATGTGGATCAGCTCGACGAGCTCAGCAGAGACTGGAGGGACAGGGTGCGGGATCTCGCCTACGACATCGAGGACTGCATCGACCTCTCCGTCCACCGCCTCCGCGGCAGCGCCGGCGAAAGCGGACTCGCTGCCAAGGTGGCGCGCATGGCCAAGAAGATCGGAGCGTTCCGTCAGATCGCGAGTCAGATCCAGAAGCTCAAGGCCCGTGTCGTGGAGGTCAGCGAGCGGCGTAACAGGTACACTCTTCATGGACTTGTACCAACTAGCTCGGATGCTTCCTCCTCGACCAAGGTTGATGTCCGGCTGTGCGCGCTCTGGACGGAAACGAAGCACCTCGTCGGCATCGATGGCCCTAGGGATGACATCATCAGTCGGTTGATGGAGCAGTAG
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| Protein seq | MEGVLVSAATGVMNSVLAKLTAFLGEEYKHAKGVRDDLVFLRSELSTMNIVLQKLADVDQLDELSRDWRDRVRDLAYDIEDCIDLSVHRLRGSAGESGLAAKVARMAKKIGAFRQIASQIQKLKARVVEVSERRNRYTLHGLVPTSSDASSSTKVDVRLCALWTETKHLVGIDGPRDDIISRLMEQ |
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| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0163900 | Os06t0163900-01 | Chr06 | 3241818 | 3246312 | - | irgsp1_rep | ||
| CDS seq | ATGGAGGGCGTCCTGGTGAGCGCGGCGACCGGAGTGATGAACTCCGTCCTCGCAAAGCTCACGGCCTTCCTCGGCGAGGAGTACAAGCACGCCAAGGGAGTCCGCGACGACCTCGTCTTCCTCCGGTCCGAGCTGAGCACCATGAATATAGTTCTGCAAAAGCTAGCAGATGTGGATCAGCTCGACGAGCTCAGCAGAGACTGGAGGGACAGGGTGCGGGATCTCGCCTACGACATCGAGGACTGCATCGACCTCTCCGTCCACCGCCTCCGCGGCAGCGCCGGCGAAAGCGGACTCGCTGCCAAGGTGGCGCGCATGGCCAAGAAGATCGGAGCGTTCCGTCAGATCGCGAGTCAGATCCAGAAGCTCAAGGCCCGTGTCGTGGAGGTCAGCGAGCGGCGTAACAGGTACACTCTTCATGGACTTGTACCAACTAGCTCGGATGCTTCCTCCTCGACCAAGGTTGATGTCCGGCTGTGCGCGCTCTGGACGGAAACGAAGCACCTCGTCGGCATCGATGGCCCTAGGGATGACATCATCAGTCGGTTGATGGAGCAGTAG
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| Protein seq | MEGVLVSAATGVMNSVLAKLTAFLGEEYKHAKGVRDDLVFLRSELSTMNIVLQKLADVDQLDELSRDWRDRVRDLAYDIEDCIDLSVHRLRGSAGESGLAAKVARMAKKIGAFRQIASQIQKLKARVVEVSERRNRYTLHGLVPTSSDASSSTKVDVRLCALWTETKHLVGIDGPRDDIISRLMEQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0163900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06850 | RBH | 0.0 | 0.050358 | 0.118183 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004720 | RBH | 0.0 | 4.015603 | 0.605101 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004640 | RBH | 0.042734 | 0.598777 | 0.088820 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004570 | RBH | 0.0 | 4.738573 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004700 | RBH | 0.074877 | 0.146464 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004610 | RBH | 0.0 | 0.159940 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0050600 | SBH | 1.0892485 | 2.302806 | 1.2865815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004490 | RBH | 0.0 | 0.118413 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0055700 | RBH | 0.2224535 | 1.0152775 | 0.038344 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004730 | RBH | 0.148050 | 0.078334 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004580 | RBH | 0.005467 | 2.900727 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004630 | RBH | 1.727281 | 3.758378 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004610 | RBH | 0.0 | 0.260673 | 0.247824 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004490 | RBH | 0.000000 | 4.765694 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004390 | RBH | 0.000000 | 9.550834 | 0.065641 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004640 | RBH | 0.168848 | 4.881926 | 1.871208 |
