Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0121500 | OGI:06003050 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:1137134-1138629 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACTTCGTTTACCATGACGACAAGTGTCTTGCCGCTACTACTACTCCACATCTTCATCCTCTCGTCCATGGGCTCTCATGGCCATGGCCATGGTGATGGAGGAGCTGAGAATCGCGAGCACTACATTGTCGTGGAAACCAGCTCCTTGTTGAAGCCCAAAGCCATCTGCTCCGGTCTCAAGGGTAATGTGTTAACGTAATTCTGCAGTAATTACTTACTAATTAACTGCTGATTAATTTAGGCTTGCTTAATGTACGCCTAATACGTGTACATGAGTACATGCGTGCAGCAATGCCATCCAGCAATGGCACGTGGGTGGCGCTGCACCGCCCCTACGGCCCGTGCTCGCCGTCGCCGACGACAACCTCGCCGCCGTTGTTGGTCGACATGCTACGCTGGGACAAGCTCCACACCGACGCCATCCGGAGGAAGGCCACCGCCGGCGGCGACGTCGTGCTTGAGCCGGACAAGCCGATCGTCGACGTGCAGCAGTCGGACTACAAGATGCAGGCGAGCTTCGGCATCGGCACCGGTGGCAGATCGGGCTCGTCGTCGTCGTCGTCGTCAAGAATCAGCCGCCCGTCGGCGATCGACGACCCCATCCTGGCGCAGCCGATGTCCATCGACACCAGCATCGACCTGCCATGGATCCAGTGCGCGCCGTGCCCCATGCCGGAGTGCTACCCGCAGCAGAACGCCTTGTTTGACCCGAGGAGGTCGAGGACCTCCGCCGCCGTGCCGTGCGGCTCCGCCGCCTGCGGCGAGCTCGGCCGCTACGGCGCTGGTTGCTCCAACAACCAGTGCCAGTACTTCGTCGACTACGGCGACGGCAGGGCCACCTCGGGGACGTACATGGTGGACGCCCTCACGCTCAACCCGAGCACCGTCGTCATGAACTTCCGCTTCGGCTGCAGCCACGCCGTGCGCGGCAACTTCAGCGCCTCCACCTCCGGCACCATGTTCGCGAGGACGCCGCTGGTGCGTAACCCGAGCATCATCCCGACGCTGTACCTGGTTCGCCTCAGGGGCATCGAGGTCGGCGGGCGGCGGCTGAACGTGCCGCCGGTGGTGTTCGCCGGCGGCGCGGTGATGGACTCGAGCGTGATCATCACGCAGCTGCCGCCGACGGCGTACAGGGCGCTGCGGCTGGCGTTCCGGAGCGCCATGGCGGCGTACCCGCGGGTGGCGGGAGGGAGGGCCGGGCTGGACACCTGCTACGACTTCGTCCGGTTCACGAGCGTGACGGTGCCGGCGGTGTCGCTGGTGTTCGACGGCGGCGCGGTGGTGAGGCTGGACGCGATGGGAGTCATGGTGGAGGGGTGCCTCGCGTTCGTGCCGACGCCGGGAGACTTCGCGCTCGGCTTCATCGGGAACGTGCAGCAGCAGACGCACGAGGTGCTCTACGACGTCGTCGGCGGCTCCGTCGGCTTCCGCCGTGGCGCCTGCTGACGACCGCACCTTGTGATCGACCCGTTTAATTTGAGATTTGCTCCGGT
More
|
||||||||||
| CDS seq | ATGACGACAAGTGTCTTGCCGCTACTACTACTCCACATCTTCATCCTCTCGTCCATGGGCTCTCATGGCCATGGCCATGGTGATGGAGGAGCTGAGAATCGCGAGCACTACATTGTCGTGGAAACCAGCTCCTTGTTGAAGCCCAAAGCCATCTGCTCCGGTCTCAAGGCAATGCCATCCAGCAATGGCACGTGGGTGGCGCTGCACCGCCCCTACGGCCCGTGCTCGCCGTCGCCGACGACAACCTCGCCGCCGTTGTTGGTCGACATGCTACGCTGGGACAAGCTCCACACCGACGCCATCCGGAGGAAGGCCACCGCCGGCGGCGACGTCGTGCTTGAGCCGGACAAGCCGATCGTCGACGTGCAGCAGTCGGACTACAAGATGCAGGCGAGCTTCGGCATCGGCACCGGTGGCAGATCGGGCTCGTCGTCGTCGTCGTCGTCAAGAATCAGCCGCCCGTCGGCGATCGACGACCCCATCCTGGCGCAGCCGATGTCCATCGACACCAGCATCGACCTGCCATGGATCCAGTGCGCGCCGTGCCCCATGCCGGAGTGCTACCCGCAGCAGAACGCCTTGTTTGACCCGAGGAGGTCGAGGACCTCCGCCGCCGTGCCGTGCGGCTCCGCCGCCTGCGGCGAGCTCGGCCGCTACGGCGCTGGTTGCTCCAACAACCAGTGCCAGTACTTCGTCGACTACGGCGACGGCAGGGCCACCTCGGGGACGTACATGGTGGACGCCCTCACGCTCAACCCGAGCACCGTCGTCATGAACTTCCGCTTCGGCTGCAGCCACGCCGTGCGCGGCAACTTCAGCGCCTCCACCTCCGGCACCATGTTCGCGAGGACGCCGCTGGTGCGTAACCCGAGCATCATCCCGACGCTGTACCTGGTTCGCCTCAGGGGCATCGAGGTCGGCGGGCGGCGGCTGAACGTGCCGCCGGTGGTGTTCGCCGGCGGCGCGGTGATGGACTCGAGCGTGATCATCACGCAGCTGCCGCCGACGGCGTACAGGGCGCTGCGGCTGGCGTTCCGGAGCGCCATGGCGGCGTACCCGCGGGTGGCGGGAGGGAGGGCCGGGCTGGACACCTGCTACGACTTCGTCCGGTTCACGAGCGTGACGGTGCCGGCGGTGTCGCTGGTGTTCGACGGCGGCGCGGTGGTGAGGCTGGACGCGATGGGAGTCATGGTGGAGGGGTGCCTCGCGTTCGTGCCGACGCCGGGAGACTTCGCGCTCGGCTTCATCGGGAACGTGCAGCAGCAGACGCACGAGGTGCTCTACGACGTCGTCGGCGGCTCCGTCGGCTTCCGCCGTGGCGCCTGCTGA
More
|
||||||||||
| Protein seq | MTTSVLPLLLLHIFILSSMGSHGHGHGDGGAENREHYIVVETSSLLKPKAICSGLKAMPSSNGTWVALHRPYGPCSPSPTTTSPPLLVDMLRWDKLHTDAIRRKATAGGDVVLEPDKPIVDVQQSDYKMQASFGIGTGGRSGSSSSSSSRISRPSAIDDPILAQPMSIDTSIDLPWIQCAPCPMPECYPQQNALFDPRRSRTSAAVPCGSAACGELGRYGAGCSNNQCQYFVDYGDGRATSGTYMVDALTLNPSTVVMNFRFGCSHAVRGNFSASTSGTMFARTPLVRNPSIIPTLYLVRLRGIEVGGRRLNVPPVVFAGGAVMDSSVIITQLPPTAYRALRLAFRSAMAAYPRVAGGRAGLDTCYDFVRFTSVTVPAVSLVFDGGAVVRLDAMGVMVEGCLAFVPTPGDFALGFIGNVQQQTHEVLYDVVGGSVGFRRGAC |
||||||||||
| Function | Aspartyl protease family protein At5g10770 [UniProtKB/Swiss-Prot:Q8S9J6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0121500 | Os06t0121500-01 | Chr06 | 1137134 | 1138629 | + | irgsp1_rep | ||
| CDS seq | ATGACGACAAGTGTCTTGCCGCTACTACTACTCCACATCTTCATCCTCTCGTCCATGGGCTCTCATGGCCATGGCCATGGTGATGGAGGAGCTGAGAATCGCGAGCACTACATTGTCGTGGAAACCAGCTCCTTGTTGAAGCCCAAAGCCATCTGCTCCGGTCTCAAGGCAATGCCATCCAGCAATGGCACGTGGGTGGCGCTGCACCGCCCCTACGGCCCGTGCTCGCCGTCGCCGACGACAACCTCGCCGCCGTTGTTGGTCGACATGCTACGCTGGGACAAGCTCCACACCGACGCCATCCGGAGGAAGGCCACCGCCGGCGGCGACGTCGTGCTTGAGCCGGACAAGCCGATCGTCGACGTGCAGCAGTCGGACTACAAGATGCAGGCGAGCTTCGGCATCGGCACCGGTGGCAGATCGGGCTCGTCGTCGTCGTCGTCGTCAAGAATCAGCCGCCCGTCGGCGATCGACGACCCCATCCTGGCGCAGCCGATGTCCATCGACACCAGCATCGACCTGCCATGGATCCAGTGCGCGCCGTGCCCCATGCCGGAGTGCTACCCGCAGCAGAACGCCTTGTTTGACCCGAGGAGGTCGAGGACCTCCGCCGCCGTGCCGTGCGGCTCCGCCGCCTGCGGCGAGCTCGGCCGCTACGGCGCTGGTTGCTCCAACAACCAGTGCCAGTACTTCGTCGACTACGGCGACGGCAGGGCCACCTCGGGGACGTACATGGTGGACGCCCTCACGCTCAACCCGAGCACCGTCGTCATGAACTTCCGCTTCGGCTGCAGCCACGCCGTGCGCGGCAACTTCAGCGCCTCCACCTCCGGCACCATGTTCGCGAGGACGCCGCTGGTGCGTAACCCGAGCATCATCCCGACGCTGTACCTGGTTCGCCTCAGGGGCATCGAGGTCGGCGGGCGGCGGCTGAACGTGCCGCCGGTGGTGTTCGCCGGCGGCGCGGTGATGGACTCGAGCGTGATCATCACGCAGCTGCCGCCGACGGCGTACAGGGCGCTGCGGCTGGCGTTCCGGAGCGCCATGGCGGCGTACCCGCGGGTGGCGGGAGGGAGGGCCGGGCTGGACACCTGCTACGACTTCGTCCGGTTCACGAGCGTGACGGTGCCGGCGGTGTCGCTGGTGTTCGACGGCGGCGCGGTGGTGAGGCTGGACGCGATGGGAGTCATGGTGGAGGGGTGCCTCGCGTTCGTGCCGACGCCGGGAGACTTCGCGCTCGGCTTCATCGGGAACGTGCAGCAGCAGACGCACGAGGTGCTCTACGACGTCGTCGGCGGCTCCGTCGGCTTCCGCCGTGGCGCCTGCTGA
More
|
|||||||
| Protein seq | MTTSVLPLLLLHIFILSSMGSHGHGHGDGGAENREHYIVVETSSLLKPKAICSGLKAMPSSNGTWVALHRPYGPCSPSPTTTSPPLLVDMLRWDKLHTDAIRRKATAGGDVVLEPDKPIVDVQQSDYKMQASFGIGTGGRSGSSSSSSSRISRPSAIDDPILAQPMSIDTSIDLPWIQCAPCPMPECYPQQNALFDPRRSRTSAAVPCGSAACGELGRYGAGCSNNQCQYFVDYGDGRATSGTYMVDALTLNPSTVVMNFRFGCSHAVRGNFSASTSGTMFARTPLVRNPSIIPTLYLVRLRGIEVGGRRLNVPPVVFAGGAVMDSSVIITQLPPTAYRALRLAFRSAMAAYPRVAGGRAGLDTCYDFVRFTSVTVPAVSLVFDGGAVVRLDAMGVMVEGCLAFVPTPGDFALGFIGNVQQQTHEVLYDVVGGSVGFRRGAC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0121500 | RBH | 0.0 | 0.0 | 0.214800 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g03080 | RBH | 0.0 | 0.0 | 0.044395 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0121800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001630 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001510 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0001470 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0001490 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0001470 | RBH | 0.0 | 0.0 | 0.322666 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0018600 | RBH | 2.523904 | 0 | 0.7658625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001530 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0020200 | RBH | 3.99086 | 0 | 8.6287515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0001470 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0001500 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0001350 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G001430 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001560 | RBH | 0.0 | 0.0 | 0.0 |
