Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0575400 | OGI:05077650 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:28663289-28666596 | ||||||||
| Gene Symbol | OsFbox283, Os_F0368 | ||||||||||
| DNA seq | AGCCCCTCCTTTCCTTCCATCGCTGCACCACCGCCGCCACCGCCAGGTTCGCGTCGCCGACGTGCCCTACGCCGCTGCTGTTCGTCGCCCGGTCTCTAGTTTGGCTGACTTCTCGCCGCAGCCGGTCACATCACGCGTCCTTATCACACGCTGCTCTTCAATCTCCTCCTCCCGCCGCCGCCGCCGCCGCCGTCATCCGCCTCCCCAGAAGCTGCATCTCTAGTCCGGTGAGTCCGATTTCACTCATTCTTCTCTGCAACTCAACCGGGCTTGCAGATTTATTGCCGTTGCAGGAGATTTTTAGTTTCGGGAGTTGTTATATCGAGAGATAGTATTGTTCTGCTTATCTAAACGACAAGTTTGCAGCGCAAATGTTACAATATGGCTAAATTTTATACTCCCATTCTCTAACGATTTTCCATAGGAGGACGCAATTTGGAGCAATTCAAGAAGTCCTGATAGGAAAAAGGACTCCCATTATCTTAACGATTTTCTATAGGAGGGCGCAATTTGGAGCAATTCAAGAAGTCCTGATAGGAAAAGGAAGGGAATAAAAAGAGTCCAGGTTCCTCTTGCTCGTACCAGGGCCATCGCAATCCTTTTTATGCCTAGTCGAATTTTCCGAAATTGAGGTCAAAATTCAAGTACAAAAACAGATAGTAGTAGATAGGAGAGAAATAGTGATCTGAAGGAGGGGAAACGGAAGTGATTTCTCGGTGAGATCTGACGAAGAAGAGTCGTCGTCGACCTACTAGTTCCACATGCCTGCGAAACGCAACCAGAAGCGGCGCCGCCGCCAAATCAGAGCCCAGAGTAAGCCACCTTACTCTTACTCTGAACTCAAGAGATTGGGCCTTCGTTTCTTCCTTTTTTCTGCATTCATGTATGAGCAACCTGCAACCATAGCCATCCTTATCCTCTTTTTTTTTGTGTCGCAGATGAACTGATTAGGTGGTGTAAAAGAAAGGGATCACCTTGTCAGCATGGTGATTCTCGAGCTGTCAAAACAATGAGACGTTCTACCCCATACCCATGCCTTCCTGAGGTACTGCTGTATGAAATTCTGATGATGCAGGCTTAGATTCCAAGCATGATATTACCATGAGTGATCTGATAGGGCTAATTCTTGGGACTATACTTGAATACCTGAATATTACAGTATTGTTTATATAAACAGAAGTCAGATATAGTATTTTAGTACTGCAATGTGGCCACAGTCCTACACTCGTACTGAACTAGCAGATTCTCTTCGTTCTAGTTACCACTTTTCTCTCTGCAAAGGCTGGCAGTATTACTAACAAATCTCTTCAGAATTTTACCTAAGTGCGATGCTTTACATATTTAGTACCATGTTCATAAATTGGCATAACTGGGGTGCTTTAGTGCTATGCTGCACTTATTAGCATTAAGAAAAATTGGAAAAATATTTTTTCTTTCCACCTGCTTCACATTTCGTACAAGAGTATTGGTTTTGCTATGTTGCTACCTTAATCCAGAACAAATGGCTAGATTTGCTACAGCAAGTAAAAGTATTCTTTTAATCCAAGTCAAAAGTATTTTTCATGGTAGTTAATTCGTGCTAGCCATTAGCAACTTTATTTCTTCTCCTTGGAAAACCCACTAATGACACTGGTAGCAAAAATTCTCTATATGCCATGTTTACATTTCACTGCACCATCTTTCTACGTAACGCTGCATGCCATGATGTTCTACCGTTTTTCGTTCTCTAATGGAAGTAACCATTTGGATTTACGACTGCAATGTTGATCTTCCATCCCATGCTTGTGTACGCAGGACATCTGGCATCATATACATTCCCTAATGCCAATGCGTGATGCTGCCCGTGCTGCTTGTTTGTCTAGAACCTTTTTACAGTCCTGGAGAAGTCATCCCAATCTCATTTTAAATAAGGATACAATTGGCTTGAATGCGAGTGCTTGTGGAGGGAATTTCAGCCGCAAAGTTGACCATATTATGAGGAACCACTCAGGCATTGGCGTGAAAATATTCAGGCTTGAATACCTTGGCGTCGTGGGGTTTGATGCCAGTCGCTATCTTGACAGTTGGCTTCAGGTGGTTGTTAAGCCAGGGATTGAAGAGCTGACCCTTGTGTTGTGTAAAACCAAGAGAGAGTACAATTTCCCATGCTCACTTTTATCTGATGGGATTCAAAATTCAATTAGGTACCTCAGACTCGATTGGTGTGCCCTTCGTCCCACTGCTGAACTCGGCCCCTTGCAAAGCCTTACAAGCCTGCGTCTGCGTTCGGTGAGTATCAGGGGGGAAGAATTGCAGTGTCTTCTTTCCAATTCTCCTGCGTTGGAGCAGTTGCGCATTTCTAGTTGCACGGAGATAGTTTGCTTGAAGATACCTTGCTCCCTGCAGAAGCTCAGCAACCTTACTGTTATTGGATGTGACAGCCTGAAAGTATTAGAGAACAAAGCTCCAAATCTCTCCAGTTTTTTTGTTTCTGGATGCTCTAACCTGAGAATATTAGAGAATAAAACTCCAAATCTCTCCAGTTTTTTCTGTAGAGGAGTCGGGGCAAAGCTCTCACTTGGAGAAACACTGAAAATGAAGAAGCTAGGCATGGGCCGTGCGAATGCTGTGCATTATGCTCGTGCTGAGCTGCCTTCCATTATGCCAAATCTTGAAACTCTTAACATACGTTCAGGACCTGAGGTATGTATATATATATCCAGAAGCTTTAGGTGTTATAGACTAGTATTACATATATATGCGTATTACATTAGTCATACCTGTGTATGATTTTAGACGTGTCATATTTGTTATACAGGCGGTAAATACACCAGTGCTGCCTACCAAATTCCTCTACCTCAAGCACCTGAGCATTAGTTTGATAGCAGTATCGACACTTTCCCCGTCCTATGATTATTTTTCTCTGGTTTCTTTCCTTGACGCTTCTCCTTCGTTGGAAACTTTTATCTTGGATGTAAGGCACTGTCCATTAACTCTGTCCTGCTAACATAGCTGTTCACTCTGGGTCCATTTATCTCAATCGTGTTCTCCTTTCCATCTTCAGGTGCAGCAGCGAAGCATGGAGCATGAATCGGTTTTTGCAAAATCCTCGGGTTTGAGGCAAATTCCTGAAAACCGCCATGACAGCCTCAAGACTGTGAAGATCTCTGGTTTCTGCTCTGCAAAGAGCTTGGTTGAGCTAACTTGTTATATTCTGAAGAACGTGGTGTCACTCGAGTCTCTTACATTGGACACCATTCATGGTGATTGTAGGTGTTACCTAAAAACTTCTCCATTTTGTAATCACATAGAGGAGGATATTCTCATGG
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| CDS seq | ATGCCTGCGAAACGCAACCAGAAGCGGCGCCGCCGCCAAATCAGAGCCCAGAATGAACTGATTAGGTGGTGTAAAAGAAAGGGATCACCTTGTCAGCATGGTGATTCTCGAGCTGTCAAAACAATGAGACGTTCTACCCCATACCCATGCCTTCCTGAGGACATCTGGCATCATATACATTCCCTAATGCCAATGCGTGATGCTGCCCGTGCTGCTTGTTTGTCTAGAACCTTTTTACAGTCCTGGAGAAGTCATCCCAATCTCATTTTAAATAAGGATACAATTGGCTTGAATGCGAGTGCTTGTGGAGGGAATTTCAGCCGCAAAGTTGACCATATTATGAGGAACCACTCAGGCATTGGCGTGAAAATATTCAGGCTTGAATACCTTGGCGTCGTGGGGTTTGATGCCAGTCGCTATCTTGACAGTTGGCTTCAGGTGGTTGTTAAGCCAGGGATTGAAGAGCTGACCCTTGTGTTGTGTAAAACCAAGAGAGAGTACAATTTCCCATGCTCACTTTTATCTGATGGGATTCAAAATTCAATTAGGTACCTCAGACTCGATTGGTGTGCCCTTCGTCCCACTGCTGAACTCGGCCCCTTGCAAAGCCTTACAAGCCTGCGTCTGCGTTCGGTGAGTATCAGGGGGGAAGAATTGCAGTGTCTTCTTTCCAATTCTCCTGCGTTGGAGCAGTTGCGCATTTCTAGTTGCACGGAGATAGTTTGCTTGAAGATACCTTGCTCCCTGCAGAAGCTCAGCAACCTTACTGTTATTGGATGTGACAGCCTGAAAGTATTAGAGAACAAAGCTCCAAATCTCTCCAGTTTTTTTGTTTCTGGATGCTCTAACCTGAGAATATTAGAGAATAAAACTCCAAATCTCTCCAGTTTTTTCTGTAGAGGAGTCGGGGCAAAGCTCTCACTTGGAGAAACACTGAAAATGAAGAAGCTAGGCATGGGCCGTGCGAATGCTGTGCATTATGCTCGTGCTGAGCTGCCTTCCATTATGCCAAATCTTGAAACTCTTAACATACGTTCAGGACCTGAGGTATGTATATATATATCCAGAAGCTTTAGGTGTTATAGACTAGTATTACATATATATGCGTATTACATTAGTCATACCTGTGTATGA
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| Protein seq | MPAKRNQKRRRRQIRAQNELIRWCKRKGSPCQHGDSRAVKTMRRSTPYPCLPEDIWHHIHSLMPMRDAARAACLSRTFLQSWRSHPNLILNKDTIGLNASACGGNFSRKVDHIMRNHSGIGVKIFRLEYLGVVGFDASRYLDSWLQVVVKPGIEELTLVLCKTKREYNFPCSLLSDGIQNSIRYLRLDWCALRPTAELGPLQSLTSLRLRSVSIRGEELQCLLSNSPALEQLRISSCTEIVCLKIPCSLQKLSNLTVIGCDSLKVLENKAPNLSSFFVSGCSNLRILENKTPNLSSFFCRGVGAKLSLGETLKMKKLGMGRANAVHYARAELPSIMPNLETLNIRSGPEVCIYISRSFRCYRLVLHIYAYYISHTCV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0575400 | Os05t0575400-01 | Chr05 | 28663289 | 28666596 | + | irgsp1_rep | ||
| CDS seq | ATGCCTGCGAAACGCAACCAGAAGCGGCGCCGCCGCCAAATCAGAGCCCAGAATGAACTGATTAGGTGGTGTAAAAGAAAGGGATCACCTTGTCAGCATGGTGATTCTCGAGCTGTCAAAACAATGAGACGTTCTACCCCATACCCATGCCTTCCTGAGGACATCTGGCATCATATACATTCCCTAATGCCAATGCGTGATGCTGCCCGTGCTGCTTGTTTGTCTAGAACCTTTTTACAGTCCTGGAGAAGTCATCCCAATCTCATTTTAAATAAGGATACAATTGGCTTGAATGCGAGTGCTTGTGGAGGGAATTTCAGCCGCAAAGTTGACCATATTATGAGGAACCACTCAGGCATTGGCGTGAAAATATTCAGGCTTGAATACCTTGGCGTCGTGGGGTTTGATGCCAGTCGCTATCTTGACAGTTGGCTTCAGGTGGTTGTTAAGCCAGGGATTGAAGAGCTGACCCTTGTGTTGTGTAAAACCAAGAGAGAGTACAATTTCCCATGCTCACTTTTATCTGATGGGATTCAAAATTCAATTAGGTACCTCAGACTCGATTGGTGTGCCCTTCGTCCCACTGCTGAACTCGGCCCCTTGCAAAGCCTTACAAGCCTGCGTCTGCGTTCGGTGAGTATCAGGGGGGAAGAATTGCAGTGTCTTCTTTCCAATTCTCCTGCGTTGGAGCAGTTGCGCATTTCTAGTTGCACGGAGATAGTTTGCTTGAAGATACCTTGCTCCCTGCAGAAGCTCAGCAACCTTACTGTTATTGGATGTGACAGCCTGAAAGTATTAGAGAACAAAGCTCCAAATCTCTCCAGTTTTTTTGTTTCTGGATGCTCTAACCTGAGAATATTAGAGAATAAAACTCCAAATCTCTCCAGTTTTTTCTGTAGAGGAGTCGGGGCAAAGCTCTCACTTGGAGAAACACTGAAAATGAAGAAGCTAGGCATGGGCCGTGCGAATGCTGTGCATTATGCTCGTGCTGAGCTGCCTTCCATTATGCCAAATCTTGAAACTCTTAACATACGTTCAGGACCTGAGGTATGTATATATATATCCAGAAGCTTTAGGTGTTATAGACTAGTATTACATATATATGCGTATTACATTAGTCATACCTGTGTATGA
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| Protein seq | MPAKRNQKRRRRQIRAQNELIRWCKRKGSPCQHGDSRAVKTMRRSTPYPCLPEDIWHHIHSLMPMRDAARAACLSRTFLQSWRSHPNLILNKDTIGLNASACGGNFSRKVDHIMRNHSGIGVKIFRLEYLGVVGFDASRYLDSWLQVVVKPGIEELTLVLCKTKREYNFPCSLLSDGIQNSIRYLRLDWCALRPTAELGPLQSLTSLRLRSVSIRGEELQCLLSNSPALEQLRISSCTEIVCLKIPCSLQKLSNLTVIGCDSLKVLENKAPNLSSFFVSGCSNLRILENKTPNLSSFFCRGVGAKLSLGETLKMKKLGMGRANAVHYARAELPSIMPNLETLNIRSGPEVCIYISRSFRCYRLVLHIYAYYISHTCV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0575400 | RBH | 0.739897 | 0.585865 | 0.770883 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g49980 | RBH | 0.863901 | 0.487683 | 0.193730 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027950 | RBH | 0.000000 | 0.0 | 0.457610 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027750 | RBH | 0.380472 | 0.0 | 1.218109 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027760 | RBH | 0.441579 | 4.487530 | 0.908153 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027800 | RBH | 0.024870 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027710 | RBH | 1.426671 | 0.000000 | 4.061354 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0447700 | RBH | 1.339311 | 1.8847245 | 1.812521 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027400 | RBH | 0.0 | 0.151666 | 0.198771 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0460600 | RBH | 0.926158 | 2.091797 | 3.4440095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027440 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027670 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027680 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027690 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027210 | RBH | 0.257231 | 0.365119 | 0.363684 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027680 | RBH | 0.0 | 0.0 | 1.740244 |
