Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0569100 | OGI:05076580 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:28327419-28328783 | ||||||||
| Gene Symbol | OsFbox279, Os_F0100, OsFbox280, Os_F0260, Os_F0297 | ||||||||||
| DNA seq | ATGGAGACGATCCCTGTCGAGCTATGGCAAGAAATCTTGCTCAGGGCATCAACCAAAGACGTCGCCCGGTCATGTTGCGTCTCGACGCAGTGGCGCGACATCGTTAGGGACCCCTCCTTCCGGAAGCTCCACCATGACAGGCACGCCACGGCGCACGATGTCCCCGACGCTCTGCTCGTCGCCACATACAACATCGACTCGCAAAGAGTCGCCAGCGTCTTCCCGGTCGAACCGGCCGCCGTCTCTCCGACGTCGTCCACGCGCACGGCCACGGCGCCCATCTGCCGGGTCAACCACATGGAAGGCTACAGGATCGCCAACATCTGCAACGGCTTCCTCTGCTTCGCCTCCCATAGCACAGCCAAGGCCATCGTACACAACCCCGTCACCGGCGAGAGGCTGGAGGTCCCCAGGGCTCCTCGCCTCCCTCCCGACCAAGACAACGCTCGCTCGCCGGTCACGTTCGCGTTGGGGTTCAGCCCGAACAACTGTGTTTACAAGCTGTTCCGCTTCACCAACCGCACGATGGATGTGTACACGCTGGGCCGCGGCGCCGAATCCACCGGGTGGCGCCGACACGCGCTTCCTCTGCACCCGCGCAACCTGGTAGAAAGCAAGCCGGCCGTTGTCATCGGCGGCAAGATTTGTATGGCGACCATCGGCCCTGCGCCGTACAGGCACCCAGCCGACAATGGCACGCCCGGCCCGGTGCTGGTGGTCGACGTCGCGCACGAGGAGCCCTGCACGTACAGCCCACCGGACTACGGGCTCCCGTGGGCGGACGCGGCGGTGAGCGTCTTCGAGCTGCACGGGAGGTTGTGCCTGGCCATCAGGACAGAGAGGATGATCCAGTTTTGGACAATGCCAGTTGAAGAAGACGACGACGACCAACCATGGCAGCTTCTCTACAAGTTCAAGGTCGTGGATGATATCCGATTCAACCAATTTCAAAGGCTAGTGCCCATGAGTGCTTGGCTCGACGGCCACACCAACACGCTTTGCTACCGAGAGGGCAACAACGTGTACCGTAAGTACGTCGGCACTACCACGGCAACAGTACGACGTTTTTCTTCGACAAAGGTCGTTATTATGTCGTGGGACAGCAAAATCTGCCTCCCGGTGGCTTCATCGTCGTTGTCGTCGTTCCAGTGGGACATCTACGCGGGCTACCGTCCGACCCTGCTATCGCCTCTCACCTTTGCATCCGGGCAACATGAGGAAGATGATAACAAGTGTGATCTGTTCATCCGCAGCTTACTACGCACACTGCGATCCCAAAAATCACAGAAATGCCGCCCGTCTCCGACGTCAGCCGGTTGCACCAATGCCAAGAGAATTTGCTGCATAAATCCACGCGGATTCTAA
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| CDS seq | ATGGAGACGATCCCTGTCGAGCTATGGCAAGAAATCTTGCTCAGGGCATCAACCAAAGACGTCGCCCGGTCATGTTGCGTCTCGACGCAGTGGCGCGACATCGTTAGGGACCCCTCCTTCCGGAAGCTCCACCATGACAGGCACGCCACGGCGCACGATGTCCCCGACGCTCTGCTCGTCGCCACATACAACATCGACTCGCAAAGAGTCGCCAGCGTCTTCCCGGTCGAACCGGCCGCCGTCTCTCCGACGTCGTCCACGCGCACGGCCACGGCGCCCATCTGCCGGGTCAACCACATGGAAGGCTACAGGATCGCCAACATCTGCAACGGCTTCCTCTGCTTCGCCTCCCATAGCACAGCCAAGGCCATCGTACACAACCCCGTCACCGGCGAGAGGCTGGAGGTCCCCAGGGCTCCTCGCCTCCCTCCCGACCAAGACAACGCTCGCTCGCCGGTCACGTTCGCGTTGGGGTTCAGCCCGAACAACTGTGTTTACAAGCTGTTCCGCTTCACCAACCGCACGATGGATGTGTACACGCTGGGCCGCGGCGCCGAATCCACCGGGTGGCGCCGACACGCGCTTCCTCTGCACCCGCGCAACCTGGTAGAAAGCAAGCCGGCCGTTGTCATCGGCGGCAAGATTTGTATGGCGACCATCGGCCCTGCGCCGTACAGGCACCCAGCCGACAATGGCACGCCCGGCCCGGTGCTGGTGGTCGACGTCGCGCACGAGGAGCCCTGCACGTACAGCCCACCGGACTACGGGCTCCCGTGGGCGGACGCGGCGGTGAGCGTCTTCGAGCTGCACGGGAGGTTGTGCCTGGCCATCAGGACAGAGAGGATGATCCAGTTTTGGACAATGCCAGTTGAAGAAGACGACGACGACCAACCATGGCAGCTTCTCTACAAGTTCAAGGTCGTGGATGATATCCGATTCAACCAATTTCAAAGGCTAGTGCCCATGAGTGCTTGGCTCGACGGCCACACCAACACGCTTTGCTACCGAGAGGGCAACAACGTGTACCGTAAGTACGTCGGCACTACCACGGCAACAGTACGACGTTTTTCTTCGACAAAGGTCGTTATTATGTCGTGGGACAGCAAAATCTGCCTCCCGGTGGCTTCATCGTCGTTGTCGTCGTTCCAGTGGGACATCTACGCGGGCTACCGTCCGACCCTGCTATCGCCTCTCACCTTTGCATCCGGGCAACATGAGGAAGATGATAACAAGTGTGATCTGTTCATCCGCAGCTTACTACGCACACTGCGATCCCAAAAATCACAGAAATGCCGCCCGTCTCCGACGTCAGCCGGTTGCACCAATGCCAAGAGAATTTGCTGCATAAATCCACGCGGATTCTAA
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| Protein seq | METIPVELWQEILLRASTKDVARSCCVSTQWRDIVRDPSFRKLHHDRHATAHDVPDALLVATYNIDSQRVASVFPVEPAAVSPTSSTRTATAPICRVNHMEGYRIANICNGFLCFASHSTAKAIVHNPVTGERLEVPRAPRLPPDQDNARSPVTFALGFSPNNCVYKLFRFTNRTMDVYTLGRGAESTGWRRHALPLHPRNLVESKPAVVIGGKICMATIGPAPYRHPADNGTPGPVLVVDVAHEEPCTYSPPDYGLPWADAAVSVFELHGRLCLAIRTERMIQFWTMPVEEDDDDQPWQLLYKFKVVDDIRFNQFQRLVPMSAWLDGHTNTLCYREGNNVYRKYVGTTTATVRRFSSTKVVIMSWDSKICLPVASSSLSSFQWDIYAGYRPTLLSPLTFASGQHEEDDNKCDLFIRSLLRTLRSQKSQKCRPSPTSAGCTNAKRICCINPRGF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0569100 | Os05t0569100-00 | Chr05 | 28327419 | 28328783 | + | irgsp1_rep | ||
| CDS seq | ATGGAGACGATCCCTGTCGAGCTATGGCAAGAAATCTTGCTCAGGGCATCAACCAAAGACGTCGCCCGGTCATGTTGCGTCTCGACGCAGTGGCGCGACATCGTTAGGGACCCCTCCTTCCGGAAGCTCCACCATGACAGGCACGCCACGGCGCACGATGTCCCCGACGCTCTGCTCGTCGCCACATACAACATCGACTCGCAAAGAGTCGCCAGCGTCTTCCCGGTCGAACCGGCCGCCGTCTCTCCGACGTCGTCCACGCGCACGGCCACGGCGCCCATCTGCCGGGTCAACCACATGGAAGGCTACAGGATCGCCAACATCTGCAACGGCTTCCTCTGCTTCGCCTCCCATAGCACAGCCAAGGCCATCGTACACAACCCCGTCACCGGCGAGAGGCTGGAGGTCCCCAGGGCTCCTCGCCTCCCTCCCGACCAAGACAACGCTCGCTCGCCGGTCACGTTCGCGTTGGGGTTCAGCCCGAACAACTGTGTTTACAAGCTGTTCCGCTTCACCAACCGCACGATGGATGTGTACACGCTGGGCCGCGGCGCCGAATCCACCGGGTGGCGCCGACACGCGCTTCCTCTGCACCCGCGCAACCTGGTAGAAAGCAAGCCGGCCGTTGTCATCGGCGGCAAGATTTGTATGGCGACCATCGGCCCTGCGCCGTACAGGCACCCAGCCGACAATGGCACGCCCGGCCCGGTGCTGGTGGTCGACGTCGCGCACGAGGAGCCCTGCACGTACAGCCCACCGGACTACGGGCTCCCGTGGGCGGACGCGGCGGTGAGCGTCTTCGAGCTGCACGGGAGGTTGTGCCTGGCCATCAGGACAGAGAGGATGATCCAGTTTTGGACAATGCCAGTTGAAGAAGACGACGACGACCAACCATGGCAGCTTCTCTACAAGTTCAAGGTCGTGGATGATATCCGATTCAACCAATTTCAAAGGCTAGTGCCCATGAGTGCTTGGCTCGACGGCCACACCAACACGCTTTGCTACCGAGAGGGCAACAACGTGTACCGTAAGTACGTCGGCACTACCACGGCAACAGTACGACGTTTTTCTTCGACAAAGGTCGTTATTATGTCGTGGGACAGCAAAATCTGCCTCCCGGTGGCTTCATCGTCGTTGTCGTCGTTCCAGTGGGACATCTACGCGGGCTACCGTCCGACCCTGCTATCGCCTCTCACCTTTGCATCCGGGCAACATGAGGAAGATGATAACAAGTGTGATCTGTTCATCCGCAGCTTACTACGCACACTGCGATCCCAAAAATCACAGAAATGCCGCCCGTCTCCGACGTCAGCCGGTTGCACCAATGCCAAGAGAATTTGCTGCATAAATCCACGCGGATTCTAA
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| Protein seq | METIPVELWQEILLRASTKDVARSCCVSTQWRDIVRDPSFRKLHHDRHATAHDVPDALLVATYNIDSQRVASVFPVEPAAVSPTSSTRTATAPICRVNHMEGYRIANICNGFLCFASHSTAKAIVHNPVTGERLEVPRAPRLPPDQDNARSPVTFALGFSPNNCVYKLFRFTNRTMDVYTLGRGAESTGWRRHALPLHPRNLVESKPAVVIGGKICMATIGPAPYRHPADNGTPGPVLVVDVAHEEPCTYSPPDYGLPWADAAVSVFELHGRLCLAIRTERMIQFWTMPVEEDDDDQPWQLLYKFKVVDDIRFNQFQRLVPMSAWLDGHTNTLCYREGNNVYRKYVGTTTATVRRFSSTKVVIMSWDSKICLPVASSSLSSFQWDIYAGYRPTLLSPLTFASGQHEEDDNKCDLFIRSLLRTLRSQKSQKCRPSPTSAGCTNAKRICCINPRGF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0569100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g49400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027430 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027210 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027220 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027260 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027190 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0441400 | RBH | 0.0090525 | 0.0074015 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0026860 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0453600 | RBH | 0.011378 | 0.011242 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027040 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027170 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026680 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027170 | RBH | 0.0 | 0.0 | 0.0 |
