Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0538500 | OGI:05072320 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:26738233-26740873 | ||||||||
| Gene Symbol | PR5 | ||||||||||
| DNA seq | TCAACTATCAAAACCGGCCACTAGGGATGAAAGTGGTACGGATAATTTCCGAGTTCCGATCATGTTTTTCGGATGTGGATTGTTGCGGTCGGATTTTTTTTCGGATATTTTCGGATTCGGATACGAATTCGGATAGTTTTTCTCGGATACGAATTCGAATACGGTAGCGATGGTATCCGTCGGAAATCGGATTCGGTCGGAAACTATCCGACCTTTTTTGCCGGATATCCGAATCAAAATAAACAGCAAAATCCAAATTAACAACATCGAAAAACGCTCGTCACCGTCCGCCGCACGCCGTCGCCTCGCGCCGCCGAGTTCCCGCCGTCGCCGTCGGACGTCGCACGTCGCACGCCGGATCTGCTCGTCGCCGTCCGCCGCATGTCGTCCACTCGCGCTGCCGAGCCCCCTCCGTCGCCGTCGCCTCACGACATCGGATCCGCGGCTGCAGGGCCGCCAACCCCGGATCTGGCCGCCCCAAGACCGGCGTCGCCGTCCGCCGCACGCCGTCGCCTCGCGCCGCCGAGTTCCCGCCGTCGCCATGACTCGGCTGCCCCGAGGCCGGCGCGGCCGGTTCCGCTCGCCGCCGTCCGCCGCACGTCGTCGCCTCGCGCCGCCTCGCCCCCGCCGTCGCCGTCCGCCACACGAGGCCCCGCCCCTGACGTTGCCGTCGCCGTTCGCCGCACGCAGCCCCGCCCCTGTCGTCGCCGTCGCTGTCCGTCGCCGTAGCCGTCCGCCGCACGCGGTCGAGGGAGCCGGGAGGAAGGGTGGCGGGTGGCGGCTGGGAGGAGATTGGGAGGTAGAAACTAGGGTTAGGTTTATATATCCCTCCATCTAAATGGGCCAACGGGCCTAAGAATTAGCTATTAAGTCTATACGTCCTCCCTCAACTTCGAATTAAATTTTATGATACTAAATGCACTCATGTGAAAAAGTTATCAAAAACAAGTTGTAGAATTTATTAAGATCTACCAATTTTATTTTGGTCATTTCTTCATCCGAGTTTGATTGAATTATATAAATTTTGAATTTTAAAATATAAGAAATTCAAATATTTTTTCAGGTAGTAAATATATTTCAAATGGAAAAGTTATCAACAACAAAGTTGTATAACTCATCAAGAGCAACAACTTTTGTTTGGGTCATTTTTCTATATGAATTTGTTTAAATAGTTAGAATTTGGATTTCAAAATATGACACCTTCAAACAACATTTTCAAATACTAAATGATTTCAACTAAAAAAGTCATCAACAACAAAATTGTATAACTTATCAAGATCTATAGCTTTTATTTTAGTCATTTTTTCATCTGACAAAGCGATAGCAATATTGTTTACAAAATTTACATATCTCGTATATGGTTTCATAAGATATAAGAGATATATACAAATTTTATGAACAATATTACTATCACTTGGTCGGATGAAGAAATGACCAAAATAAAAGTTTTAGCTCTTGATGAGTTCTACAACTTTTATATTCAGAACTTTTTCAATTGAAATTATTTACTGCTTCAAAATATTATTTGAAGTTGCTATTTTTTGAAATTCAAAATTTTACTTGATAAAACAAAGTCACAAGAAAATATGGCCAAAATAATAGCAGTAAGAACACAATAACTCGATAGAACATGATTTTAGAACACAATAATAGCCTTGTAATGTCTTACTCTCGATTGAATCGTCTCCCTCGACCACAAAATCAGATATAACAAAATTATTAATACTAAAATTTGAAAATGTTGATATGTTCTATTAGAAAAAATAACGAGTTATATTTCTTCGTTGATTTGTGAAGGTTAGTTTGAGGGGCTTTTATGTTCCGATTAATATTCGTTACCGTATTCATTTCGATTCGTATTCGCTCCGTATGAATATGATAAAGCTAGTTTCCGACCGTATTCGATCCGTTTTCATCCCTACCGGCCACAATAAGTCATTCGGTGGTTTTGACCCCGGTTTTGTCCTACGCGATAGCTGAGTTAGTGTGGGACCCACGTGGGCCCCACATGTCAGGCTGCCACATCAGCCTCCTCTCTCCCTCTCTTTTCCCCTTCTCTCTCCCTCCTCATCTCTCTCTCTCCCCCTTCTCTGACTCAGCCGGCAGGAGGAGGAGGGCGTCGATGGCCGGCAAGGGGCGACGAGGCGGCGGTGGGGGGAGAAGCTGCAGGTGGGCGGCGGGGAGGGGCGGCGAGGAGCAGCGCGCGGGCGGCGGGGGGAGGAGCGGCGCCCGGGCTCCCCCGTCGGCCGCCGCCCACAAGGCTCACGTCGTAGAAGTCCTTCCCGTCGCCACCGCCCAGCGTGAACTCGGCGAGGGTGACGGGCGGCGCGCCGCCGAGGGAGCAGCTCACGGCGCCGCCGAAGTCCCCCGTGGCGCAGGCGAGGGACGCGGTGCCAGAGGTTGCACAGTCCGTGCGCGCCCACAAGCGGCCGGACCAACCATCCGGGGCTAGGAACGAGACGTTGGCGCCGGGCGACAGCTCGAAGCCGCCGGCCCCGATGGCCACCGCTGTGTTTCTGGACAAGGTGGTCGCCCAGACGGTGTAGGTGCAGTTGTTGCGCATCGTGAAGACCGTCGTGCCGGCTGCCTCAGCGCCGAACTGCAGCTGCGACCATAGGAACCCTGCATTGAGACACGCCAT
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| CDS seq | ATGGCGTGTCTCAATGCAGGGTTCCTATGGTCGCAGCTGCAGTTCGGCGCTGAGGCAGCCGGCACGACGGTCTTCACGATGCGCAACAACTGCACCTACACCGTCTGGGCGACCACCTTGTCCAGAAACACAGCGGTGGCCATCGGGGCCGGCGGCTTCGAGCTGTCGCCCGGCGCCAACGTCTCGTTCCTAGCCCCGGATGGTTGGTCCGGCCGCTTGTGGGCGCGCACGGACTGTGCAACCTCTGGCACCGCGTCCCTCGCCTGCGCCACGGGGGACTTCGGCGGCGCCGTGAGCTGCTCCCTCGGCGGCGCGCCGCCCGTCACCCTCGCCGAGTTCACGCTGGGCGGTGGCGACGGGAAGGACTTCTACGACGTGAGCCTTGTGGGCGGCGGCCGACGGGGGAGCCCGGGCGCCGCTCCTCCCCCCGCCGCCCGCGCGCTGCTCCTCGCCGCCCCTCCCCGCCGCCCACCTGCAGCTTCTCCCCCCACCGCCGCCTCCCGCCACCCGCCACCCTTCCTCCCGGCTCCCTCGACCGCGTGCGGCGGACGGCTACGGCGACGGACAGCGACGGCGACGACAGGGGCGGGGCTGCGTGCGGCGAACGGCGACGGCAACGTCAGGGGCGGGGCCTCGTGTGGCGGACGGCGACGGCGGGGGCGAGGCGGCGCGAGGCGACGACGTGCGGCGGACGGCGGCGAGCGGAACCGGCCGCGCCGGCCTCGGGGCAGCCGAGTCATGGCGACGGCGGGAACTCGGCGGCGCGAGGCGACGGCGTGCGGCGGACGGCGACGCCGGTCTTGGGGCGGCCAGATCCGGGGTTGGCGGCCCTGCAGCCGCGGATCCGATGTCGTGAGGCGACGGCGACGGAGGGGGCTCGGCAGCGCGAGTGGACGACATGCGGCGGACGGCGACGAGCAGATCCGGCGTGCGACGTGCGACGTCCGACGGCGACGGCGGGAACTCGGCGGCGCGAGGCGACGGCGTGCGGCGGACGGTGACGAGCGTTTTTCGATGTTGTTAATTTGGATTTTGCTGTTTATTTTGATTCGGATATCCGGCAAAAAAGGTCGGATAGTTTCCGACCGAATCCGATTTCCGACGGATACCATCGCTACCGTATTCGAATTCGTATCCGAGAAAAACTATCCGAATTCGTATCCGAATCCGAAAATATCCGAAAAAAAATCCGACCGCAACAATCCACATCCGAAAAACATGATCGGAACTCGGAAATTATCCGTACCACTTTCATCCCTAGTGGCCGGTTTTGATAGTTGA
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| Protein seq | MACLNAGFLWSQLQFGAEAAGTTVFTMRNNCTYTVWATTLSRNTAVAIGAGGFELSPGANVSFLAPDGWSGRLWARTDCATSGTASLACATGDFGGAVSCSLGGAPPVTLAEFTLGGGDGKDFYDVSLVGGGRRGSPGAAPPPAARALLLAAPPRRPPAASPPTAASRHPPPFLPAPSTACGGRLRRRTATATTGAGLRAANGDGNVRGGASCGGRRRRGRGGARRRRAADGGERNRPRRPRGSRVMATAGTRRREATACGGRRRRSWGGQIRGWRPCSRGSDVVRRRRRRGLGSASGRHAADGDEQIRRATCDVRRRRRELGGARRRRAADGDERFSMLLIWILLFILIRISGKKGRIVSDRIRFPTDTIATVFEFVSEKNYPNSYPNPKISEKKSDRNNPHPKNMIGTRKLSVPLSSLVAGFDS |
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| Function | Pathogenesis-related thaumatin-like protein 3.5 [UniProtKB/Swiss-Prot:Q5DWG1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0538500 | Os05t0538500-00 | Chr05 | 26738233 | 26740873 | - | irgsp1_rep | ||
| CDS seq | ATGGCGTGTCTCAATGCAGGGTTCCTATGGTCGCAGCTGCAGTTCGGCGCTGAGGCAGCCGGCACGACGGTCTTCACGATGCGCAACAACTGCACCTACACCGTCTGGGCGACCACCTTGTCCAGAAACACAGCGGTGGCCATCGGGGCCGGCGGCTTCGAGCTGTCGCCCGGCGCCAACGTCTCGTTCCTAGCCCCGGATGGTTGGTCCGGCCGCTTGTGGGCGCGCACGGACTGTGCAACCTCTGGCACCGCGTCCCTCGCCTGCGCCACGGGGGACTTCGGCGGCGCCGTGAGCTGCTCCCTCGGCGGCGCGCCGCCCGTCACCCTCGCCGAGTTCACGCTGGGCGGTGGCGACGGGAAGGACTTCTACGACGTGAGCCTTGTGGGCGGCGGCCGACGGGGGAGCCCGGGCGCCGCTCCTCCCCCCGCCGCCCGCGCGCTGCTCCTCGCCGCCCCTCCCCGCCGCCCACCTGCAGCTTCTCCCCCCACCGCCGCCTCCCGCCACCCGCCACCCTTCCTCCCGGCTCCCTCGACCGCGTGCGGCGGACGGCTACGGCGACGGACAGCGACGGCGACGACAGGGGCGGGGCTGCGTGCGGCGAACGGCGACGGCAACGTCAGGGGCGGGGCCTCGTGTGGCGGACGGCGACGGCGGGGGCGAGGCGGCGCGAGGCGACGACGTGCGGCGGACGGCGGCGAGCGGAACCGGCCGCGCCGGCCTCGGGGCAGCCGAGTCATGGCGACGGCGGGAACTCGGCGGCGCGAGGCGACGGCGTGCGGCGGACGGCGACGCCGGTCTTGGGGCGGCCAGATCCGGGGTTGGCGGCCCTGCAGCCGCGGATCCGATGTCGTGAGGCGACGGCGACGGAGGGGGCTCGGCAGCGCGAGTGGACGACATGCGGCGGACGGCGACGAGCAGATCCGGCGTGCGACGTGCGACGTCCGACGGCGACGGCGGGAACTCGGCGGCGCGAGGCGACGGCGTGCGGCGGACGGTGACGAGCGTTTTTCGATGTTGTTAATTTGGATTTTGCTGTTTATTTTGATTCGGATATCCGGCAAAAAAGGTCGGATAGTTTCCGACCGAATCCGATTTCCGACGGATACCATCGCTACCGTATTCGAATTCGTATCCGAGAAAAACTATCCGAATTCGTATCCGAATCCGAAAATATCCGAAAAAAAATCCGACCGCAACAATCCACATCCGAAAAACATGATCGGAACTCGGAAATTATCCGTACCACTTTCATCCCTAGTGGCCGGTTTTGATAGTTGA
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| Protein seq | MACLNAGFLWSQLQFGAEAAGTTVFTMRNNCTYTVWATTLSRNTAVAIGAGGFELSPGANVSFLAPDGWSGRLWARTDCATSGTASLACATGDFGGAVSCSLGGAPPVTLAEFTLGGGDGKDFYDVSLVGGGRRGSPGAAPPPAARALLLAAPPRRPPAASPPTAASRHPPPFLPAPSTACGGRLRRRTATATTGAGLRAANGDGNVRGGASCGGRRRRGRGGARRRRAADGGERNRPRRPRGSRVMATAGTRRREATACGGRRRRSWGGQIRGWRPCSRGSDVVRRRRRRGLGSASGRHAADGDEQIRRATCDVRRRRRELGGARRRRAADGDERFSMLLIWILLFILIRISGKKGRIVSDRIRFPTDTIATVFEFVSEKNYPNSYPNPKISEKKSDRNNPHPKNMIGTRKLSVPLSSLVAGFDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0538500 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46110 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025140 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024930 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024960 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024960 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0415900 | RBH | 0.129885 | 0.102515 | 0.0448795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024600 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0426900 | RBH | 0.013279 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024340 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024780 | RBH | 0.0 | 0.0 | 0.0 |
