Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0537700 | OGI:05072220 | 10/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:26714509-26716025 | ||||||||
| Gene Symbol | Os_F0659, OsFbox271, Os_F0666, OsFbox272, Os_F0626, OsFbox273, Os_F0573 | ||||||||||
| DNA seq | CGTCGTCGTCGTCCTCCCGTCTCGTGCCATTCGCCGCAGAGTCCCCAACCTCCACTCCCCTCCTCGCCCGTCTCCAATGGATGGCCATCAGTTCGGGCCATGGAACCTCTTGCCCGACGACATCCTGGAGTTGCTGGTCGGCCGCAACCTGTGCGAGATCGACCGCCTCCACGCGCGCCGCGTCTGCCACTCCTGGCGCGCGGCGTTCGCGAGGATCGAGCCCCCGCCGCCGCCTCCACCGCTGCCGTTGCTCCTCCTCCCGGAAGCCGACGACAACGAGCACGGTCTTGCCTTCTCCTGCGTCCTCAGCGGCTGGGACACCCACCCCTTCTTCCTCCCGCGCGCCGCGCGGCACCGCGCCCGCTGCTTCGGCTCGTGCGATGGCGTCTGGCTCTTCCTCGCCATGGAGGACGGCCTGCAAGGCGACCGAGCTCGAGACCACGTCCTCGTCAACCTCCACAGCTTCCAGTTCCTCGACCTCCCCAACGTGATCCGCCTCGACCACACGTTCCCGCAATTGATGAAGGACATCGAGATCGCGATCGTCGCCGTCACGCTCTCGCGCCAGCCAACCCAGCAAGGATGCGTCGCCGCCGGCATCATCGAGCTCCCTCCCTTCCCCATCGGAGTGCGGCCGTTCGCGTTCTGGCGCATGGGGGATCGGGTGATCTTGCCTTTCTACGAAGACGTGTTCGGGGATCAAGCAGTAGAGGACGTCATATACCACAACGGCTACTTCCTCTTCCTCACCCAGGACGAACACATTCGTGTGTGCCAAGAGCCGGTCTTCCACGACACCAACGTGGACGTGGACTCGATCCTGTTGCGATTCGAGCCGCGCGTCGACGACGGCGACGCCGTCCTTGCTCGCTACCTCGTGCTGTGCCGGGGGAAGGTGCTCATGGTCGTCAGGTTGGGCTGTCCACATCGCCGCTCGCCGACGTCGGCGTTCCGGGTGTTCGAGAGAGTGGACTATCTGGTGGTGAACGCCGGCGTGGTCGAGGTGCTTGAGCACACCTGGAGCGAGATTGACGAGCTCGGCGGCAGGATGCTGTTCCTCGGGCGAGGCTGCTCCAGATCCTACGAGGAGGCCGATGGGTATCCCGGCATGGAGGGCGTCTACTTCTTGGATGACCGGAGCTTCCGTGACCCGATCTTCCACGACCCGGACATGGTGTTCGATCACACCTACCATTGCTGCGACAATGGCAGATGGTAGAAATCACCGTTCAATGTCGATCGCCGCTTCCCGGAGCGAGGCCGGTCGAAAATCTCTCCTCCGGTTTGGATTCTCCCTTGAAGAAATTAACGAACAGGGGTTAGTTCAACAGGTCAAGTTAGTTTGTGATTGTTTGTTTCTTCTTTCTGAGAATCTGAGTTCGATGGTGTTCTCGTGTTCAAATTGTTGCTGATTAGTAGTAGATATAATTTGCCTGCATTTCTTTGTGGTGCAAAGCTGAAGGCAGAACCCGTTTAGTGCTGAATTGCTACAGACGATACTTGCCGTTGATTCAGTG
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| CDS seq | ATGGATGGCCATCAGTTCGGGCCATGGAACCTCTTGCCCGACGACATCCTGGAGTTGCTGGTCGGCCGCAACCTGTGCGAGATCGACCGCCTCCACGCGCGCCGCGTCTGCCACTCCTGGCGCGCGGCGTTCGCGAGGATCGAGCCCCCGCCGCCGCCTCCACCGCTGCCGTTGCTCCTCCTCCCGGAAGCCGACGACAACGAGCACGGTCTTGCCTTCTCCTGCGTCCTCAGCGGCTGGGACACCCACCCCTTCTTCCTCCCGCGCGCCGCGCGGCACCGCGCCCGCTGCTTCGGCTCGTGCGATGGCGTCTGGCTCTTCCTCGCCATGGAGGACGGCCTGCAAGGCGACCGAGCTCGAGACCACGTCCTCGTCAACCTCCACAGCTTCCAGTTCCTCGACCTCCCCAACGTGATCCGCCTCGACCACACGTTCCCGCAATTGATGAAGGACATCGAGATCGCGATCGTCGCCGTCACGCTCTCGCGCCAGCCAACCCAGCAAGGATGCGTCGCCGCCGGCATCATCGAGCTCCCTCCCTTCCCCATCGGAGTGCGGCCGTTCGCGTTCTGGCGCATGGGGGATCGGGTGATCTTGCCTTTCTACGAAGACGTGTTCGGGGATCAAGCAGTAGAGGACGTCATATACCACAACGGCTACTTCCTCTTCCTCACCCAGGACGAACACATTCGTGTGTGCCAAGAGCCGGTCTTCCACGACACCAACGTGGACGTGGACTCGATCCTGTTGCGATTCGAGCCGCGCGTCGACGACGGCGACGCCGTCCTTGCTCGCTACCTCGTGCTGTGCCGGGGGAAGGTGCTCATGGTCGTCAGGTTGGGCTGTCCACATCGCCGCTCGCCGACGTCGGCGTTCCGGGTGTTCGAGAGAGTGGACTATCTGGTGGTGAACGCCGGCGTGGTCGAGGTGCTTGAGCACACCTGGAGCGAGATTGACGAGCTCGGCGGCAGGATGCTGTTCCTCGGGCGAGGCTGCTCCAGATCCTACGAGGAGGCCGATGGGTATCCCGGCATGGAGGGCGTCTACTTCTTGGATGACCGGAGCTTCCGTGACCCGATCTTCCACGACCCGGACATGGTGTTCGATCACACCTACCATTGCTGCGACAATGGCAGATGGTAG
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| Protein seq | MDGHQFGPWNLLPDDILELLVGRNLCEIDRLHARRVCHSWRAAFARIEPPPPPPPLPLLLLPEADDNEHGLAFSCVLSGWDTHPFFLPRAARHRARCFGSCDGVWLFLAMEDGLQGDRARDHVLVNLHSFQFLDLPNVIRLDHTFPQLMKDIEIAIVAVTLSRQPTQQGCVAAGIIELPPFPIGVRPFAFWRMGDRVILPFYEDVFGDQAVEDVIYHNGYFLFLTQDEHIRVCQEPVFHDTNVDVDSILLRFEPRVDDGDAVLARYLVLCRGKVLMVVRLGCPHRRSPTSAFRVFERVDYLVVNAGVVEVLEHTWSEIDELGGRMLFLGRGCSRSYEEADGYPGMEGVYFLDDRSFRDPIFHDPDMVFDHTYHCCDNGRW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0537700 | Os05t0537700-01 | Chr05 | 26714509 | 26716025 | + | irgsp1_rep | ||
| CDS seq | ATGGATGGCCATCAGTTCGGGCCATGGAACCTCTTGCCCGACGACATCCTGGAGTTGCTGGTCGGCCGCAACCTGTGCGAGATCGACCGCCTCCACGCGCGCCGCGTCTGCCACTCCTGGCGCGCGGCGTTCGCGAGGATCGAGCCCCCGCCGCCGCCTCCACCGCTGCCGTTGCTCCTCCTCCCGGAAGCCGACGACAACGAGCACGGTCTTGCCTTCTCCTGCGTCCTCAGCGGCTGGGACACCCACCCCTTCTTCCTCCCGCGCGCCGCGCGGCACCGCGCCCGCTGCTTCGGCTCGTGCGATGGCGTCTGGCTCTTCCTCGCCATGGAGGACGGCCTGCAAGGCGACCGAGCTCGAGACCACGTCCTCGTCAACCTCCACAGCTTCCAGTTCCTCGACCTCCCCAACGTGATCCGCCTCGACCACACGTTCCCGCAATTGATGAAGGACATCGAGATCGCGATCGTCGCCGTCACGCTCTCGCGCCAGCCAACCCAGCAAGGATGCGTCGCCGCCGGCATCATCGAGCTCCCTCCCTTCCCCATCGGAGTGCGGCCGTTCGCGTTCTGGCGCATGGGGGATCGGGTGATCTTGCCTTTCTACGAAGACGTGTTCGGGGATCAAGCAGTAGAGGACGTCATATACCACAACGGCTACTTCCTCTTCCTCACCCAGGACGAACACATTCGTGTGTGCCAAGAGCCGGTCTTCCACGACACCAACGTGGACGTGGACTCGATCCTGTTGCGATTCGAGCCGCGCGTCGACGACGGCGACGCCGTCCTTGCTCGCTACCTCGTGCTGTGCCGGGGGAAGGTGCTCATGGTCGTCAGGTTGGGCTGTCCACATCGCCGCTCGCCGACGTCGGCGTTCCGGGTGTTCGAGAGAGTGGACTATCTGGTGGTGAACGCCGGCGTGGTCGAGGTGCTTGAGCACACCTGGAGCGAGATTGACGAGCTCGGCGGCAGGATGCTGTTCCTCGGGCGAGGCTGCTCCAGATCCTACGAGGAGGCCGATGGGTATCCCGGCATGGAGGGCGTCTACTTCTTGGATGACCGGAGCTTCCGTGACCCGATCTTCCACGACCCGGACATGGTGTTCGATCACACCTACCATTGCTGCGACAATGGCAGATGGTAG
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| Protein seq | MDGHQFGPWNLLPDDILELLVGRNLCEIDRLHARRVCHSWRAAFARIEPPPPPPPLPLLLLPEADDNEHGLAFSCVLSGWDTHPFFLPRAARHRARCFGSCDGVWLFLAMEDGLQGDRARDHVLVNLHSFQFLDLPNVIRLDHTFPQLMKDIEIAIVAVTLSRQPTQQGCVAAGIIELPPFPIGVRPFAFWRMGDRVILPFYEDVFGDQAVEDVIYHNGYFLFLTQDEHIRVCQEPVFHDTNVDVDSILLRFEPRVDDGDAVLARYLVLCRGKVLMVVRLGCPHRRSPTSAFRVFERVDYLVVNAGVVEVLEHTWSEIDELGGRMLFLGRGCSRSYEEADGYPGMEGVYFLDDRSFRDPIFHDPDMVFDHTYHCCDNGRW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0537700 | RBH | 0.321344 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46050 | RBH | 0.216596 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0539300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025100 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024890 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024900 | RBH | 0.0 | 0.0 | 0.201400 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024930 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024930 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0414900 | RBH | 0 | 0.0124835 | 0.12934 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024560 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0426100 | RBH | 0.0342115 | 0.1271315 | 0.008102 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024620 | RBH | 0.074147 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024820 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024820 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024860 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024310 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024760 | RBH | 0.0 | 0.0 | 0.0 |
