Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0514600 | OGI:05068990 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:25514447-25516258 | ||||||||
| Gene Symbol | SBI, GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4 | ||||||||||
| DNA seq | ACACACAAAGTCAAATCAATACATGAGTAAAAATACAACCCACAAACTTGCATAGTTTCACACACCCAACAACAAGCTTTTTGGCTTTACTAGCTTAGCTAGCTAGCTAGCACTGGTTGGTGACAAACCCTACACTGTACATCATGTAGTGATGACAACTGTACATTTTGGCAATCAATCATCCAAAAGGAAAGAGGATCTAGCAAATTATCCAATTGATTGGAGCTGCATATGCATAGATAATAAGCATGTTGTCTCTATTTGAGCTATAGTAGAATTAAAAGTTGCATCCATGGCCCCACATATGCCCTACCCTCCTTACCCTTATCTAGCTACCATGCTGGCCCCAGTCCCCTTGTTGCACGGATCATGGCTGGATCGAATCGATGGACGATCAATCATCGATTGGTGTTAGGTTGATCAGTAGCTTAATTCGTCGTCATTCTCAATGCAGTGTCGATCTGTGTAAGCGAGGAGCCTAGCTCAGCTTTAGGGTGTAAGTGGGTAAGCCGCAAACCCACTAATAGGTTAAAGTAAGTGGGTTCGAAACTTACTTTTATCTATAAGTGAGTTTCACGGTTTAACCACTTACACCCTTAACTTAGCTTAGGCGAGTGGGTTAGCGACAGGTGGTGGCTGCCGGTGGAAGGGGGCCAGGCGGTTGTCGCTGAGGCGGGAGAGGTAGGCAGCCTTCTTGTACTCCCCCCACGTGAACTCCTCGTACCGGCTCTGCTCCTCCTCCTCGCCGTTGCCGACGCCGGCCACCAGCAGCTGCCGCAGCGGCGCGATCCTCTGCTCCAATGGCGGCCCTCCGAAGTAGATCATTGACACCCTCGACTTGAGCTTGTTGGCCACCACCCTGTGCCGGACGCTCCTCATCCTCCCGTTCGTCATCACCTGCAGCGAGTCGCCGACGATGACGAGGAAGGAGGCGGGGTCGGGAGGGACGGTGACCCACTGGTGGTCGCCGGCGTCGGCGTCGTGGTGGAGGGCGACCTGGAGGCCGGAGGTGGAGTTGGAGTGGAGGATGGAGATGAGCTGCGGGTCGGTGTGCTCGCCGAACCCGGTCGGGCTGCAGTTGGGCATCAGGTTCTGCAGCAGCGGCGGGCATGGCGGGTAGTGGTTCAGCCGGAGGATCTGGTCGCTCGCCGCGCCGTCGCCGACGACCATGTCGGCGAGCGCGCCGCGCGGCGCCACGCCGAGGCCCTCCGCCACCATCTCCAGCACCGTCCTCGCCATCCCCCGCATGGCGCCCACGTACTTGTTCGCCGCGTCCCTGCGCGCGCGCATGCACGTCGTACATTGACGCGAACTGTGTTTCGAAGCATTTCGTATGCATACAAGGTGTTCGACGGTTGGTTACCGGAGCGAGGACGACGGTGCGGGGGAGGAACGGGAGAGGGACGCGCCGTCGATGGCGAGGAGGAGGTACTCGAGCCACCCCATGTCGCCATTGCGGCCGATGCGCTTGCTCCCGTACCCGAACGGCGACGCGGGGCCGTGCGCGTCCTTCGCCGCCTGCGGCGACGCGAAGAACCGGACGGCCTCCGCCTCCAGCCTACCCACCACGCCCTCCCCGACGCCATGGCTCACCACCTTGAAGAACCCAAACCTCTCGCACGCCCGCACCACCTCGCCCGCCGCGCCGTCCGCGGCCAGGTCCACCACCGGCAACCCGGCGCCGAAGTTATCCTCCACCGACGGCGACCTCACCAGCGAGATCTGCTCCAGCGCCGCCGGCTTCGCGAGCACCACCATGGCCAAGATCGAGCGAGCTAGAGTACACACTGCTACCGATGAGTGAGCTGAGCT
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| CDS seq | ATGGTGGTGCTCGCGAAGCCGGCGGCGCTGGAGCAGATCTCGCTGGTGAGGTCGCCGTCGGTGGAGGATAACTTCGGCGCCGGGTTGCCGGTGGTGGACCTGGCCGCGGACGGCGCGGCGGGCGAGGTGGTGCGGGCGTGCGAGAGGTTTGGGTTCTTCAAGGTGGTGAGCCATGGCGTCGGGGAGGGCGTGGTGGGTAGGCTGGAGGCGGAGGCCGTCCGGTTCTTCGCGTCGCCGCAGGCGGCGAAGGACGCGCACGGCCCCGCGTCGCCGTTCGGGTACGGGAGCAAGCGCATCGGCCGCAATGGCGACATGGGGTGGCTCGAGTACCTCCTCCAGGTCGCCCTCCACCACGACGCCGACGCCGGCGACCACCAGTGGGTCACCGTCCCTCCCGACCCCGCCTCCTTCCTCGTCATCGTCGGCGACTCGCTGCAGGTGATGACGAACGGGAGGATGAGGAGCGTCCGGCACAGGGTGGTGGCCAACAAGCTCAAGTCGAGGGTGTCAATGATCTACTTCGGAGGGCCGCCATTGGAGCAGAGGATCGCGCCGCTGCGGCAGCTGCTGGTGGCCGGCGTCGGCAACGGCGAGGAGGAGGAGCAGAGCCGGTACGAGGAGTTCACGTGGGGGGAGTACAAGAAGGCTGCCTACCTCTCCCGCCTCAGCGACAACCGCCTGGCCCCCTTCCACCGGCAGCCACCACCTGTCGCTAACCCACTCGCCTAA
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| Protein seq | MVVLAKPAALEQISLVRSPSVEDNFGAGLPVVDLAADGAAGEVVRACERFGFFKVVSHGVGEGVVGRLEAEAVRFFASPQAAKDAHGPASPFGYGSKRIGRNGDMGWLEYLLQVALHHDADAGDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLEQRIAPLRQLLVAGVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNRLAPFHRQPPPVANPLA |
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| Function | Gibberellin 2-beta-dioxygenase 3 [UniProtKB/Swiss-Prot:Q8S0S6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0514600 | Os05t0514600-01 | Chr05 | 25514447 | 25516258 | - | irgsp1_rep | ||
| CDS seq | ATGGTGGTGCTCGCGAAGCCGGCGGCGCTGGAGCAGATCTCGCTGGTGAGGTCGCCGTCGGTGGAGGATAACTTCGGCGCCGGGTTGCCGGTGGTGGACCTGGCCGCGGACGGCGCGGCGGGCGAGGTGGTGCGGGCGTGCGAGAGGTTTGGGTTCTTCAAGGTGGTGAGCCATGGCGTCGGGGAGGGCGTGGTGGGTAGGCTGGAGGCGGAGGCCGTCCGGTTCTTCGCGTCGCCGCAGGCGGCGAAGGACGCGCACGGCCCCGCGTCGCCGTTCGGGTACGGGAGCAAGCGCATCGGCCGCAATGGCGACATGGGGTGGCTCGAGTACCTCCTCCAGGTCGCCCTCCACCACGACGCCGACGCCGGCGACCACCAGTGGGTCACCGTCCCTCCCGACCCCGCCTCCTTCCTCGTCATCGTCGGCGACTCGCTGCAGGTGATGACGAACGGGAGGATGAGGAGCGTCCGGCACAGGGTGGTGGCCAACAAGCTCAAGTCGAGGGTGTCAATGATCTACTTCGGAGGGCCGCCATTGGAGCAGAGGATCGCGCCGCTGCGGCAGCTGCTGGTGGCCGGCGTCGGCAACGGCGAGGAGGAGGAGCAGAGCCGGTACGAGGAGTTCACGTGGGGGGAGTACAAGAAGGCTGCCTACCTCTCCCGCCTCAGCGACAACCGCCTGGCCCCCTTCCACCGGCAGCCACCACCTGTCGCTAACCCACTCGCCTAA
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| Protein seq | MVVLAKPAALEQISLVRSPSVEDNFGAGLPVVDLAADGAAGEVVRACERFGFFKVVSHGVGEGVVGRLEAEAVRFFASPQAAKDAHGPASPFGYGSKRIGRNGDMGWLEYLLQVALHHDADAGDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLEQRIAPLRQLLVAGVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNRLAPFHRQPPPVANPLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0514600 | RBH | 0.0 | 0.0 | 0.429603 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g43880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0757200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0023490 | RBH | 0.0 | 0.0 | 1.152571 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023410 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0023360 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0023340 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0023430 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0395300 | RBH | 0.510182 | 0.575763 | 2.054049 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0023010 | RBH | 0.0 | 0.0 | 0.544001 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0405200 | RBH | 1.866935 | 0.890279 | 0.0954485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0023180 | RBH | 0.077064 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0023080 | RBH | 0.0 | 1.826558 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0023250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0023270 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0023280 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022720 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0023110 | RBH | 0.0 | 0.0 | 0.0 |
