Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0418500 | OGI:05055190 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:20498729-20500703 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAACAGGATGGCTATATTGTTTTCTAGGACTGAAACAAACAAATAAGTCATAGAGGGAAAATGGCTATCCATTTGGTATAACCAATTTGTGGCAGACCTTAATAAGTTAGTAGACATTGCAAAGAAGTAGACCCTCAAAAGCAATAGTTTATGTCATACCGAGAGTCCTAGAAGACTGGAAGCACAACTGGACATCAGCAGACCTGCTACCAGAATTCACTACAAGAGCATTTTCCACATTCAAAATGGTGAAAACGACTAGAATCTCGCACAACGATCTTCCGATGGGTTATTTCACTGATTAACTTCATTACTGTATGGCAGTCCACACATACCCGAAGGTTCTTCACCACCCGGATCACAGACCCTGGAGGAGACTTGATCAATCCAAAAGCAACAGCCAATCTCTCACTGTGCAAGAAGAGATGGTGCTCCTTTTCGTTTTCTTCCAAGTCATGCATCACAGAACTAGTATCAGGAACATAACCCCTTTTGCGCATCTCCAATACCATTTCCTCAAGAAAACCCATAATTTCTTCTCTTACATCAAGTGGCACTTCCCCAGCATGAAACAAACGGAATTCTCGTCCAGCTTCAATCCAGCTATACACTGGCTCTTTTCTTATCTCCAATCCAATCGTACACTTTCTAGCCTTGGCTACGGAATCCCACTTTCCGTTCACTGCATAAACATTAGATAACAAGATATATGTGGAAGAATCTTTTGGCCGCAGCTCTAATAGTTTATCGGCAATCCTGATACACATTTCAGCATCCTTGTACTTCTTACATGCGCTCAACAGGGCCCCCCAAGTAGCTTCATCAGGCTCATATGGCATCGTAGTCATTAGTTCTTCAGCTTCCAATAAATGGCCTGAGCGACTAAGAAGATCCAGATAACACGTATAATGCTGCAATCCAGGAGTGATGCCATACTCGTTCTTCATTGACTCAAAAAGCTGCCGCCCTTTCTGAACAAGACCAGCATGGCTACAAGCATAGATCAACCCGACAAAGGTCACCTTGTTGGGCTTCGCTCCTGCAAGAACCATCCTGTCATAAAGAGCCAATGCCTCCTCAGCTCGACCATGCTGTGCCTCTCCAACAACCATTGTCGTCCACGAGATTACCGCACGGAATGTAATCCCCTCAAATACTTCTCTAGCAGAGAGTATATCACTGCATTTCGAGTACATGTCAATCAACGCATTCCCAACTATCATGCTGGACAGGAACCCAAGCCTCATTGCGGAACCATGCAACTGCCTGCCCAGCACCACCAATGACAATCGATAGCACAAATGCATCATCAATCCTGATATCATCCCGCCTCATCTCAACAAAAAGCTCCACCGCGCCGACGCTCTCACCGGTCTTCACTAGCCCCGAGATGAGCGCAGTCCATGCAAACAGGTTGCGCCCAGGCATGCTCCGGAACAGCTGCAGCGCCTCCTCACCGCGGCCGTTGGACGCGTACCCAGAAACCAGGGCAGTCCACACGACGCTGTTCTTGGCGCCCATACTGTCGAACACCTTCCTGGCATCGTCGGGGAAGCCACATTTGCAGTACATGTCGACCAGAGAGGACTTGACGACGTCATCCCCGCTGTACGGGGACACCACGAAATGCTCGTGCAGCTGCCTGCCAAGGCGGAGGCTGCGGAGCCTTGCGGAGACGCTGGCGACGGAGGCGATCACGAAGTGGTCGGGGCGGAGGGCGTCGGCGGAGAGCATGCGGCGGAGGACCGGGAGGGCGAGCTCGAGGGACGCGGAGCGGGAGACGGCGGCGAGGAGCGAGAAGTAGAGGTAGATGTTACGGCGCGGGGTTTCGTCGAACAGGTGGAGGGCGTCGAGGAGGAGGCGGGACTTGGCGTAGGCGGAGACGAGGGCCGCGGGGTTTGGAGTGTGGTGGGCCAGAGGCGGCGGCGGCCGGAGAAAGCATGCGCAGGACCCGCTTCGTGTCTTCCTCCCCAA
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| CDS seq | ATGCTCTCCGCCGACGCCCTCCGCCCCGACCACTTCGTGATCGCCTCCGTCGCCAGCGTCTCCGCAAGGCTCCGCAGCCTCCGCCTTGGCAGGCAGCTGCACGAGCATTTCGTGGTGTCCCCGTACAGCGGGGATGACGTCGTCAAGTCCTCTCTGGTCGACATGTACTGCAAATGTGGCTTCCCCGACGATGCCAGGAAGGTGTTCGACAGTATGGGCGCCAAGAACAGCGTCGTGTGGACTGCCCTGGTTTCTGGGTACGCGTCCAACGGCCGCGGTGAGGAGGCGCTGCAGCTGTTCCGGAGCATGCCTGGGCGCAACCTGTTTGCATGGACTGCGCTCATCTCGGGGCTAGTGAAGACCGGTGAGAGCGTCGGCGCGGTGGAGCTTTTTGTTGAGATGAGGCGGGATGATATCAGGATTGATGATGCATTTGTGCTATCGATTGTCATTGGTGGTGCTGGGCAGGCAGTTGCATGGTTCCGCAATGAGGCTTGGGTTCCTGTCCAGCATGATAGTTGGGAATGCGTTGATTGA
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| Protein seq | MLSADALRPDHFVIASVASVSARLRSLRLGRQLHEHFVVSPYSGDDVVKSSLVDMYCKCGFPDDARKVFDSMGAKNSVVWTALVSGYASNGRGEEALQLFRSMPGRNLFAWTALISGLVKTGESVGAVELFVEMRRDDIRIDDAFVLSIVIGGAGQAVAWFRNEAWVPVQHDSWECVD |
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| Function | Pentatricopeptide repeat-containing protein At4g14050, mitochondrial [UniProtKB/Swiss-Prot:O23266] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0418500 | Os05t0418500-00 | Chr05 | 20498729 | 20500703 | - | irgsp1_rep | ||
| CDS seq | ATGCTCTCCGCCGACGCCCTCCGCCCCGACCACTTCGTGATCGCCTCCGTCGCCAGCGTCTCCGCAAGGCTCCGCAGCCTCCGCCTTGGCAGGCAGCTGCACGAGCATTTCGTGGTGTCCCCGTACAGCGGGGATGACGTCGTCAAGTCCTCTCTGGTCGACATGTACTGCAAATGTGGCTTCCCCGACGATGCCAGGAAGGTGTTCGACAGTATGGGCGCCAAGAACAGCGTCGTGTGGACTGCCCTGGTTTCTGGGTACGCGTCCAACGGCCGCGGTGAGGAGGCGCTGCAGCTGTTCCGGAGCATGCCTGGGCGCAACCTGTTTGCATGGACTGCGCTCATCTCGGGGCTAGTGAAGACCGGTGAGAGCGTCGGCGCGGTGGAGCTTTTTGTTGAGATGAGGCGGGATGATATCAGGATTGATGATGCATTTGTGCTATCGATTGTCATTGGTGGTGCTGGGCAGGCAGTTGCATGGTTCCGCAATGAGGCTTGGGTTCCTGTCCAGCATGATAGTTGGGAATGCGTTGATTGA
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| Protein seq | MLSADALRPDHFVIASVASVSARLRSLRLGRQLHEHFVVSPYSGDDVVKSSLVDMYCKCGFPDDARKVFDSMGAKNSVVWTALVSGYASNGRGEEALQLFRSMPGRNLFAWTALISGLVKTGESVGAVELFVEMRRDDIRIDDAFVLSIVIGGAGQAVAWFRNEAWVPVQHDSWECVD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0418500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g34570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0880900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017400 | RBH | 0.0 | 1.537908 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017400 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017220 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017450 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0272500 | SBH | 0 | 2.086442 | 1.379934 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0016940 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0323500 | RBH | 0.022008 | 0.0227015 | 0.287934 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017290 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017180 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017310 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017330 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017380 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G016880 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017190 | RBH | 0.0 | 0.000000 | 0.0 |
