Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0414501 | OGI:05054710 | 11/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:20277236-20278478 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAAAAATCTGGCAGATTAGCTGCCAATTAGCCAGGTAAAGAAAGTTCAATTGCCCTCCACCAACATTGATCAACAGCACCATCCAGCTTACACAGCCAAACATCCCATAAGTCTACCTAGCTCTAGTCTTGCATGTTCTTAGCCAAAACATACTCGATTACAGGGGTTATCTGGGAGTTCAAAACGCCAGACAAGTTGAAGCATGGGTAGCTTAGCTAAGCTAAGCTTCTGTCTTGATTTCCATTTGGTTTTCTTCATCACACGATGTTTTCTATCATGGCAAGCTCGAACTACGGTTCATCAAGAGAGAGGTTAGCAGACTCAAGGATGCCAGCACCACCCAATGATTTAAAGTTGTCGTCTCCTACATCCCAGTACCTTGCCTCTCGGTCTGTATGATATTCTTCTGATCTTCTTGATAGAAGCCGCAAATTGTTGTGCACAAAAACCAAATCATCGGCCCATTTAGGACGGAGTTTGTCCCTCACGATGTCGCGAATAGAATCGTAAGTTCTCCAGTTCCTCTGGCAGCAAGAAGATGAAACAGGTTGGCTGAGAAGCTTGAAAGCCAAACTCTGAACTGCCTGTGCTGAAGTTCCATGGGTCGCCCACCACATCTTGGGGTCAAGTTTATCCCTATCAGCTCTTGAATTCAAGCTAAAATGTTTTGTTCCCAGAAGAGCAAACTCTCCATATTCTGACTTGACAGTTCTCAAGTTGTCTGTAGTAAAAAACAATTTCCTCCAGCAATTATTCCTCACTCGAGAAATCTCAGCATCTCTATGTGGGGGTAGACGATTAGCAGCTTGATTAATCCAGCTGTCACTGTAATACCTACAAAAGAGACCACAAAGAGGCATATATATCAAATAATGGCTTCAGGAATACAAATCACTTGGTAACTACAAAGCAAGATTCACCTTGGATTTAGTGAGTGCGCCAAACACTGGAGCGGAGTTTTGCTCCTGCTCCACCAATCTTCTAGAATGCCATGCACAACAGAGTAAAATGCTGACTCCTCTTCAGGCTCTCTTGATTCATGCTTATAAATGGCAGCCTTTACCTTCTCGACCATAGTATTCCACATTTCATTGATAAGATGAAGGCGTGGCTCTTCAGTGTCTGTCACGCGCATCATCGAATATATAGGCTCAGTGAAAGAAAGAATGTAATCAACTTGTTTCCACCACGAGTTATCAGTAAGCTTGTACTTCACAAGCTGTGCTTGCTCCATGTTATCAT
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| CDS seq | ATGGAGCAAGCACAGCTTGTGAAGTACAAGCTTACTGATAACTCGTGGTGGAAACAAGTTGATTACATTCTTTCTTTCACTGAGCCTATATATTCGATGATGCGCGTGACAGACACTGAAGAGCCACGCCTTCATCTTATCAATGAAATGTGGAATACTATGGTCGAGAAGGTAAAGGCTGCCATTTATAAGCATGAATCAAGAGAGCCTGAAGAGGAGTCAGCATTTTACTCTGTTGTGCATGGCATTCTAGAAGATTGGTGGAGCAGGAGCAAAACTCCGCTCCAGTGTTTGGCGCACTCACTAAATCCAAGGTATTACAGTGACAGCTGGATTAATCAAGCTGCTAATCGTCTACCCCCACATAGAGATGCTGAGATTTCTCGAGTGAGGAATAATTGCTGGAGGAAATTGTTTTTTACTACAGACAACTTGAGAACTGTCAAGTCAGAATATGGAGAGTTTGCTCTTCTGGGAACAAAACATTTTAGCTTGAATTCAAGAGCTGATAGGGATAAACTTGACCCCAAGATGTGGTGGGCGACCCATGGAACTTCAGCACAGGCAGTTCAGAGTTTGGCTTTCAAGCTTCTCAGCCAACCTGTTTCATCTTCTTGCTGCCAGAGGAACTGGAGAACTTACGATTCTATTCGCGACATCGTGAGGGACAAACTCCGTCCTAAATGGGCCGATGATTTGGTTTTTGTGCACAACAATTTGCGGCTTCTATCAAGAAGATCAGAAGAATATCATACAGACCGAGAGGCAAGGTACTGGGATGTAGGAGACGACAACTTTAAATCATTGGGTGGTGCTGGCATCCTTGAGTCTGCTAACCTCTCTCTTGATGAACCGTAG
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| Protein seq | MEQAQLVKYKLTDNSWWKQVDYILSFTEPIYSMMRVTDTEEPRLHLINEMWNTMVEKVKAAIYKHESREPEEESAFYSVVHGILEDWWSRSKTPLQCLAHSLNPRYYSDSWINQAANRLPPHRDAEISRVRNNCWRKLFFTTDNLRTVKSEYGEFALLGTKHFSLNSRADRDKLDPKMWWATHGTSAQAVQSLAFKLLSQPVSSSCCQRNWRTYDSIRDIVRDKLRPKWADDLVFVHNNLRLLSRRSEEYHTDREARYWDVGDDNFKSLGGAGILESANLSLDEP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0414501 | Os05t0414501-01 | Chr05 | 20277236 | 20278478 | - | irgsp1_rep | ||
| CDS seq | ATGGAGCAAGCACAGCTTGTGAAGTACAAGCTTACTGATAACTCGTGGTGGAAACAAGTTGATTACATTCTTTCTTTCACTGAGCCTATATATTCGATGATGCGCGTGACAGACACTGAAGAGCCACGCCTTCATCTTATCAATGAAATGTGGAATACTATGGTCGAGAAGGTAAAGGCTGCCATTTATAAGCATGAATCAAGAGAGCCTGAAGAGGAGTCAGCATTTTACTCTGTTGTGCATGGCATTCTAGAAGATTGGTGGAGCAGGAGCAAAACTCCGCTCCAGTGTTTGGCGCACTCACTAAATCCAAGGTATTACAGTGACAGCTGGATTAATCAAGCTGCTAATCGTCTACCCCCACATAGAGATGCTGAGATTTCTCGAGTGAGGAATAATTGCTGGAGGAAATTGTTTTTTACTACAGACAACTTGAGAACTGTCAAGTCAGAATATGGAGAGTTTGCTCTTCTGGGAACAAAACATTTTAGCTTGAATTCAAGAGCTGATAGGGATAAACTTGACCCCAAGATGTGGTGGGCGACCCATGGAACTTCAGCACAGGCAGTTCAGAGTTTGGCTTTCAAGCTTCTCAGCCAACCTGTTTCATCTTCTTGCTGCCAGAGGAACTGGAGAACTTACGATTCTATTCGCGACATCGTGAGGGACAAACTCCGTCCTAAATGGGCCGATGATTTGGTTTTTGTGCACAACAATTTGCGGCTTCTATCAAGAAGATCAGAAGAATATCATACAGACCGAGAGGCAAGGTACTGGGATGTAGGAGACGACAACTTTAAATCATTGGGTGGTGCTGGCATCCTTGAGTCTGCTAACCTCTCTCTTGATGAACCGTAG
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| Protein seq | MEQAQLVKYKLTDNSWWKQVDYILSFTEPIYSMMRVTDTEEPRLHLINEMWNTMVEKVKAAIYKHESREPEEESAFYSVVHGILEDWWSRSKTPLQCLAHSLNPRYYSDSWINQAANRLPPHRDAEISRVRNNCWRKLFFTTDNLRTVKSEYGEFALLGTKHFSLNSRADRDKLDPKMWWATHGTSAQAVQSLAFKLLSQPVSSSCCQRNWRTYDSIRDIVRDKLRPKWADDLVFVHNNLRLLSRRSEEYHTDREARYWDVGDDNFKSLGGAGILESANLSLDEP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0414501 | RBH | 6.685386 | 8.812951 | 9.141662 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g34260 | RBH | 3.696377 | 3.748924 | 2.132128 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0310300 | RBH | 5.8243195 | 25.554476 | 65.739771 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0319500 | RBH | 9.5583865 | 54.0267315 | 26.6821155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
