Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0414200 | OGI:05054640 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:20258788-20262445 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCTGGAGGATGAGCTCAATCAGCTCCGCGCCGAGGCGGGCTGCGTCGAGCGCTGCCTCGGCGGCGGCGGCGGCGGGAGAGGCAACTGTGAGCTCGTACGCTGGCTGCGCCAGCTCAAGGAGGTGGTGTACGAGGCCGACGACGTCCTCGACGAGTTCGCCTACCGGAGGCTCGCCCCCAACGACGGCAAGGTCAGCCTACTAGGGTCTTCTTCCATTGGCAAGATCGGCAAGCAGCTCGTTGGCAAGGACGAGTCGGTCAATAGGCTCAAGGCCGTCGTGGAGAAACTGAGCAGCATCCGCGCGAACTCCGGCCGGCTGATGCAGGCGGCGGGGCTGACCAAGCCAGGTTCCGGCGAGCCGAGCAGCACGCTCCTAACCTCGGATGGTCCGGTCACCGGCTCGATTCTGGAGGATGGTGAGGTGTTTGGGCGCGACAAGGAGCGTGAGCAATTGGTGTCTTGGCTAATCGGCAGCACGCCCGAAGCCGAAGGCGAGGATCGGAGCGCCGCCGCCGATGACACCATCCCCGTCGCCGCTATCTTGGGGCTCGGAGGCATTGGGAAGACGACGCTCGCACGCGTCCTGTGCCATGATCATGAGGTGAAGGAGGCCTTCGATCTGATCATGTGGGTGTGTCCCGCAGGCAATTACAGCAAGCTCGATCTCGCGAAGCAAATCCTGCAGTCCGCGGAACTCCCCGACGACACGAATAGCTTCGATCGGCTGCAGCGGCGGCTGAAGGAGGCCGTCTCGTCGCGCCGGTTCTTGCTGATTCTTGACAATGTCTGGAATAAAGATGAGAATGAGAACTCGTACAGGGATATGTGGGCTGATGTGTTAGCTCCCCTCAGATTTGGCCGAGCTGGGAGTAAGATCGTGGTTACCACCAGGAAGAGGATTGTGGCAGACTTGCTGAATGCGAGCAAGTTTGTTTGGCTGAATGGGCTGGAGTTCGCTGATGTTTGGTTGTTGTTCAAGAAGTTTGCCTTCGACAACAATGATGTTGACAGGCACCCGGAATTGAAGGAAATTGGGGAGCAGATTGCTGTGAAGCTCAAGGGGTTGCCATTGGCTGCCAAGGTTGTCGGTGGCATGCTAAAGCGGAAACCAAGTTTGACTGAGTGGAAGAGGATCTTGAAGATGGAAATATATGACAATGTTAGCTCCACACTGGAGCTGTGTTATCAGAACCTGCAGGAGCACATCCAACCATGCTTTGCGATATGCAGCATATTCCCAAAGAACTGGAGGTTCAATCGTGACAAGTTGATTAAGATTTGGATGGCCCTGGGTTTTATCCAGTTCAGGCCAGATGATACGAAGAATCAATTGGAGGAGGATGTAGGGAAGGAGTACTTTAATCAACTTGTGGCACAATCATTCTTCCATGAGCGCAAGGAAGGCCGCCGAACTTACTACTACATCCACGACCTGATGCATGACCTGGCCGACAATGTCTCTCGAATTGACTGCGCAAGAGTTGAAAGTGTAGAGTTTGAGAAAAAAGACATACGCATACCTGATACTGTCCGTCACTTATCTGTGACCAGTGATGCGGTGATGCAGCTCAAAGGTCGGGCCGAGCTCAAGAGGTTGCGCACATTCATTATTCTCAAGCATTCCTCATCTTCCGTTGTTCCATTGCCAGATGATGTCCTCAAGGAATTGAAAGGTCTCCGTGTGCTTGGTTTGGATGGCTGTGATATGGTTGAATTATCAGATAAAGTTGGCCAGTTGATACATCTGAGGTACCTTTCTCTTTGCAAGACGATTACAAAGCTTCCAAAATCAGTGACAAAACTTTTCCTTCTTGAGACCCTATATATCCCTAAGAGGTGTCAGCTTGAGGAGTTTCCAAAAGACATGTGGAAGTTGAAATATCTCCGCCATTTGGATATAAACAGGACAAACACATCGAAAATTGTCGGAATTGGAAAAATGATCCATCTCCAGGGATCAATTGAGTTCCATGTTAAAAAGGAAAAGGGTCATACATTAGAAGACTTGAACGATATGAATGATCTCCGAAGAAAGCTCCATATCAAGAACCTTGATGTTGTAGCAAGCAAAGAAGAGGCCAGCAAAGCTGGATTAAGCAAGAAACAGAGCATAAAGGTGCTGGAATTGGAATGGAACTCCCCTGGCAAAAGTGTCCCTTCTGTCGATGCTGAGGTCTTAGAAGGCCTTAAACCACATCCAGATGTTGAAGAGATTCATATTAGGAGATATCACGGTAATACCTCACCATGTTGGTTGGACAGGAAGGACATAACATTTCTTAAATATTTACATTTGACCAACTGTAGAAAGTGGGCGGTCCTGCCTCCTCTTGGGCAGCTTCCCTTCCTCAAAGTTCTGCATTTGAAAGAGATGTGTTCATTGAAACAGATTGGAAGTGAGTTTTATGGAACCAATCCAACTGCATTTCCATATTTGGAGGACCTTGAATTTGATGATATGCCAAAATGGGTTGAGTGGACCAAAGAAGAAGAGAAGTATGACAGCGTGTTCCCCAGACTCCGTAAACTGAAGCTTTTGAGCTGTCCCGATTTGATTAAAGTGCCTCCCTTCCCGCAGTCCGTGAGAAAGGTCAGTATTGAGAATACAGGGTTTGTGTCACACCTGAAACTATCTTCTTCTTCATCATCAAAAGCCAACAAAGTTAAATTGGAAACATGTTCTGCCGCTGTCCTTACCAATGGTTTGTTCCACCAGCAACAAGTGCAGGAAATTGTTGATTTGACCTTGAGGCACTGCCAAGATGTAAAGTTTGAAGAGCTTCATGCACTTACTTCCCTCAAGAGGCTGCAAATATCTTATTTAGAGATGACTGACGAGGAGTTGGGTACTTGTTTACAAGGTTTACAATCGCTGACCTTACTGGATATAGTCCACTGCAGTAAAATAACCACTCTTCCACAGATTGAGAACCCGAGCAACTTGACGAAGTTTCATGAGCTAAACATTCGGCAGTGCCCCCAATTGTCTTCTCTGCATTCATTGCCTAGTTTTGCCACACTTGAAACAGTGTTGATTGAAAATTGCTCCAGGGTCACCGTAGAATCTTTCCCTGCCAACTTCAACAGCTTAACCTCTCTGAGAAAACTGAGCATAATGAACTGCACTGGATTGGAGTCCTTGCCAAGTGGCTTCCCATCTTCACTGCAGGTTGTTCATCTGATTGGTTGCAAGCCAACGTTGCTGAGCCAACTACAAAATAAGGATGGACCAGAATGGGATAAAATAGCTTCGATCCCAATGAAACTGATCCACTGATCAGGGTTCAGACTTCAGAGGCTAATTTTGCAGGTGTGTTTGATACCATTAGCATATGCACATTTCACTGTACTTGTAAGTTTTAACAATCAATGAGATGTATCTCTGTTTCATTGTAGTGATACTGGCCAATTGTGTCAAAATTTCCGGCACGCAAGATGAACGATACCAGACGAACCCCAACAGATTTTTCTGGCTGGAACAATTGTGTACTGTCTGTAAATGTATGTGCTGCATTTGTAGTGAACTGGTCACATTTCCTGAAATATGTTTCGTTTTTTTTCCTACGTTAGCCGGTGCACTTCACCTGCGCATGTTCAAATACTGTCTTGCTTCAGTTTACTGAGCTGTGAACAATTGTAATATCGGTCTACCGTGAG
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| CDS seq | ATGCAGGCGGCGGGGCTGACCAAGCCAGGTTCCGGCGAGCCGAGCAGCACGCTCCTAACCTCGGATGGTCCGGTCACCGGCTCGATTCTGGAGGATGGTGAGGTGTTTGGGCGCGACAAGGAGCGTGAGCAATTGGTGTCTTGGCTAATCGGCAGCACGCCCGAAGCCGAAGGCGAGGATCGGAGCGCCGCCGCCGATGACACCATCCCCGTCGCCGCTATCTTGGGGCTCGGAGGCATTGGGAAGACGACGCTCGCACGCGTCCTGTGCCATGATCATGAGGTGAAGGAGGCCTTCGATCTGATCATGTGGGTGTGTCCCGCAGGCAATTACAGCAAGCTCGATCTCGCGAAGCAAATCCTGCAGTCCGCGGAACTCCCCGACGACACGAATAGCTTCGATCGGCTGCAGCGGCGGCTGAAGGAGGCCGTCTCGTCGCGCCGGTTCTTGCTGATTCTTGACAATGTCTGGAATAAAGATGAGAATGAGAACTCGTACAGGGATATGTGGGCTGATGTGTTAGCTCCCCTCAGATTTGGCCGAGCTGGGAGTAAGATCGTGGTTACCACCAGGAAGAGGATTGTGGCAGACTTGCTGAATGCGAGCAAGTTTGTTTGGCTGAATGGGCTGGAGTTCGCTGATGTTTGGTTGTTGTTCAAGAAGTTTGCCTTCGACAACAATGATGTTGACAGGCACCCGGAATTGAAGGAAATTGGGGAGCAGATTGCTGTGAAGCTCAAGGGGTTGCCATTGGCTGCCAAGGTTGTCGGTGGCATGCTAAAGCGGAAACCAAGTTTGACTGAGTGGAAGAGGATCTTGAAGATGGAAATATATGACAATGTTAGCTCCACACTGGAGCTGTGTTATCAGAACCTGCAGGAGCACATCCAACCATGCTTTGCGATATGCAGCATATTCCCAAAGAACTGGAGGTTCAATCGTGACAAGTTGATTAAGATTTGGATGGCCCTGGGTTTTATCCAGTTCAGGCCAGATGATACGAAGAATCAATTGGAGGAGGATGTAGGGAAGGAGTACTTTAATCAACTTGTGGCACAATCATTCTTCCATGAGCGCAAGGAAGGCCGCCGAACTTACTACTACATCCACGACCTGATGCATGACCTGGCCGACAATGTCTCTCGAATTGACTGCGCAAGAGTTGAAAGTGTAGAGTTTGAGAAAAAAGACATACGCATACCTGAAATATGTTTCGTTTTTTTTCCTACGTTAGCCGGTGCACTTCACCTGCGCATGTTCAAATACTGTCTTGCTTCAGTTTACTGA
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| Protein seq | MQAAGLTKPGSGEPSSTLLTSDGPVTGSILEDGEVFGRDKEREQLVSWLIGSTPEAEGEDRSAAADDTIPVAAILGLGGIGKTTLARVLCHDHEVKEAFDLIMWVCPAGNYSKLDLAKQILQSAELPDDTNSFDRLQRRLKEAVSSRRFLLILDNVWNKDENENSYRDMWADVLAPLRFGRAGSKIVVTTRKRIVADLLNASKFVWLNGLEFADVWLLFKKFAFDNNDVDRHPELKEIGEQIAVKLKGLPLAAKVVGGMLKRKPSLTEWKRILKMEIYDNVSSTLELCYQNLQEHIQPCFAICSIFPKNWRFNRDKLIKIWMALGFIQFRPDDTKNQLEEDVGKEYFNQLVAQSFFHERKEGRRTYYYIHDLMHDLADNVSRIDCARVESVEFEKKDIRIPEICFVFFPTLAGALHLRMFKYCLASVY |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0414200 | Os05t0414200-01 | Chr05 | 20258788 | 20262445 | + | irgsp1_rep | ||
| CDS seq | ATGCAGGCGGCGGGGCTGACCAAGCCAGGTTCCGGCGAGCCGAGCAGCACGCTCCTAACCTCGGATGGTCCGGTCACCGGCTCGATTCTGGAGGATGGTGAGGTGTTTGGGCGCGACAAGGAGCGTGAGCAATTGGTGTCTTGGCTAATCGGCAGCACGCCCGAAGCCGAAGGCGAGGATCGGAGCGCCGCCGCCGATGACACCATCCCCGTCGCCGCTATCTTGGGGCTCGGAGGCATTGGGAAGACGACGCTCGCACGCGTCCTGTGCCATGATCATGAGGTGAAGGAGGCCTTCGATCTGATCATGTGGGTGTGTCCCGCAGGCAATTACAGCAAGCTCGATCTCGCGAAGCAAATCCTGCAGTCCGCGGAACTCCCCGACGACACGAATAGCTTCGATCGGCTGCAGCGGCGGCTGAAGGAGGCCGTCTCGTCGCGCCGGTTCTTGCTGATTCTTGACAATGTCTGGAATAAAGATGAGAATGAGAACTCGTACAGGGATATGTGGGCTGATGTGTTAGCTCCCCTCAGATTTGGCCGAGCTGGGAGTAAGATCGTGGTTACCACCAGGAAGAGGATTGTGGCAGACTTGCTGAATGCGAGCAAGTTTGTTTGGCTGAATGGGCTGGAGTTCGCTGATGTTTGGTTGTTGTTCAAGAAGTTTGCCTTCGACAACAATGATGTTGACAGGCACCCGGAATTGAAGGAAATTGGGGAGCAGATTGCTGTGAAGCTCAAGGGGTTGCCATTGGCTGCCAAGGTTGTCGGTGGCATGCTAAAGCGGAAACCAAGTTTGACTGAGTGGAAGAGGATCTTGAAGATGGAAATATATGACAATGTTAGCTCCACACTGGAGCTGTGTTATCAGAACCTGCAGGAGCACATCCAACCATGCTTTGCGATATGCAGCATATTCCCAAAGAACTGGAGGTTCAATCGTGACAAGTTGATTAAGATTTGGATGGCCCTGGGTTTTATCCAGTTCAGGCCAGATGATACGAAGAATCAATTGGAGGAGGATGTAGGGAAGGAGTACTTTAATCAACTTGTGGCACAATCATTCTTCCATGAGCGCAAGGAAGGCCGCCGAACTTACTACTACATCCACGACCTGATGCATGACCTGGCCGACAATGTCTCTCGAATTGACTGCGCAAGAGTTGAAAGTGTAGAGTTTGAGAAAAAAGACATACGCATACCTGAAATATGTTTCGTTTTTTTTCCTACGTTAGCCGGTGCACTTCACCTGCGCATGTTCAAATACTGTCTTGCTTCAGTTTACTGA
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| Protein seq | MQAAGLTKPGSGEPSSTLLTSDGPVTGSILEDGEVFGRDKEREQLVSWLIGSTPEAEGEDRSAAADDTIPVAAILGLGGIGKTTLARVLCHDHEVKEAFDLIMWVCPAGNYSKLDLAKQILQSAELPDDTNSFDRLQRRLKEAVSSRRFLLILDNVWNKDENENSYRDMWADVLAPLRFGRAGSKIVVTTRKRIVADLLNASKFVWLNGLEFADVWLLFKKFAFDNNDVDRHPELKEIGEQIAVKLKGLPLAAKVVGGMLKRKPSLTEWKRILKMEIYDNVSSTLELCYQNLQEHIQPCFAICSIFPKNWRFNRDKLIKIWMALGFIQFRPDDTKNQLEEDVGKEYFNQLVAQSFFHERKEGRRTYYYIHDLMHDLADNVSRIDCARVESVEFEKKDIRIPEICFVFFPTLAGALHLRMFKYCLASVY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0414200 | RBH | 0.337248 | 0.159897 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g34220 | RBH | 0.603155 | 0.534398 | 0.124094 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017180 | RBH | 0.229439 | 6.105282 | 1.105810 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017180 | RBH | 0.137684 | 4.563215 | 1.080009 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0016980 | RBH | 1.374385 | 4.707700 | 1.174230 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017020 | RBH | 0.167913 | 0.152746 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017210 | RBH | 1.962959 | 11.716413 | 3.956261 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0310000 | RBH | 4.394151 | 28.8432245 | 9.272139 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0016710 | RBH | 0.207397 | 0.375887 | 0.450811 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0319200 | RBH | 4.447777 | 28.8603345 | 6.1169105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017060 | RBH | 0.111170 | 0.065222 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0016940 | RBH | 0.146699 | 5.816449 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017080 | RBH | 1.523058 | 15.538902 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017110 | RBH | 0.544007 | 0.827403 | 0.343476 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017150 | RBH | 0.277899 | 4.659783 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G016620 | RBH | 0.567778 | 2.296629 | 0.999015 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0016930 | RBH | 0.433328 | 12.112947 | 1.630164 |
