Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0375700 | OGI:05048880 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:18135817-18137269 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCGATCAGACGGCGCTGCAGTTGGCGGGCTGGAAGGAGAGGAGGCCATTGGCGAGGTCGTAGAGCACGCGCATGTCCTGCTGCATGAAGTTGCCGATGATGGTCGTCTCGTTCGTCGGCAGCGTCGCGTTCCCGCTCGCCGAGCTCACCACCGCCATGCACCACGTCGACGCCTCCACCCGCGCCCAGTACTTCTCCGCCGGGATCACCAGCTCCCTTCCGCCGCCGACGCCATCGTCGAACCGGAGCACCAGCGGCGGCACCGCCGCCGCGGCGAGCGAGTCCCCGTCGTCGCCCGCCTCCACGCACAGCTCCAGCGCGCCGCCCAGCTTCGCCGGCGGCGGCACGAGGCTGCCGCTGCCCCGCAGTTGACGCGCCAGCTCCTTCGTCAGCGCGCGGTGGGCGGGGTCGACGAGGCGGGTGAACGGCGAGCCGGAGTCGATCAGCGCGCCGCCGGCCCACACCTTGGGCGCCGCCTCCCGGAGGTCGAACGCGCCGGCGGGGAGGGCCACCGTGGCGTTCCCGGCCGCCAGCCCGACGAGGGGGAGGTAGTAGAATGTGCTGAAGGGGCTGTCCTTGGGGTTCTTGGCGAACGGCACGGTGGTCACCGGAGCGCCGCCGCCGCCGCCGCCGCCGGCGGCGGCGCTCAGGCCGGCCAGCTCGCCGTCGCCGACGAACAGGTGGCTTGGGCTAACGGTGTCCCTGAAGTAGGGTGTCAGGCAGTAGGAGAACTCGGTGGCGTTGAGCTGGCTGACGAGCGAGAGCGCGCCCCTGCCGAGCCCGATGATGCCGGAGGCGCCGTTGAGCGCCCCCGGCGAGATCCTCGTCTGGCTGACGCAGCCGAAGGCGAGGGTCACCGACGACGACGACGGGAACGTGAACGCGTCGGTGCCCAGAACGCCGAGCGCTACGCCGGCGCCGTAGGAGGCAGCGACCACGCACGCGTCGTCGCCGCTGCCGCCTCCGCGCGCGCACCCCGCCGTCTCCGGCGCGACGCCGCACAGGGCGCCGTCGTCGTCGTCGCACGGCACCGCCCGGGCGGTGCGCGACAGGGAGAAGTTGTAGTAGGGGAGGTTCTGAGGGAAGCATCCGCCGCCGCCGGCGGCGGCGGCGGCGGGAAGGCGGCAGGTGGAGCACTGCGTCCAGACGAGGTCGCTGCCGGTGTCGACGACGGCCTCCGCCGGCTGCGGCGGGTCGCCGATGCCGTAGCTGGCGATGTACTGCGTCTTGCCGGACCAGCGGAGGGGCGCGGCCACGCCGCCCGCCGCCGCCGCCGTGGACGCGTGCAGGAGGCGCCGGTGGTGGGTGCGCTCGGTGGCGCGGCGCACGCGCTCCTCCATGGTGCAGTGCTCGTTGGCGTCGACGTGGGCGAGCTCGAGGCGGAGGGCGGCGCCGCCGGCGAGTGCCATGGAGAAGCACAGGAGCTCGAGCAAGAGCAGAGGTGTCGCCATTT
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| CDS seq | ATGGCGACACCTCTGCTCTTGCTCGAGCTCCTGTGCTTCTCCATGGCACTCGCCGGCGGCGCCGCCCTCCGCCTCGAGCTCGCCCACGTCGACGCCAACGAGCACTGCACCATGGAGGAGCGCGTGCGCCGCGCCACCGAGCGCACCCACCACCGGCGCCTCCTGCACGCGTCCACGGCGGCGGCGGCGGGCGGCGTGGCCGCGCCCCTCCGCTGGTCCGGCAAGACGCAGTACATCGCCAGCTACGGCATCGGCGACCCGCCGCAGCCGGCGGAGGCCGTCGTCGACACCGGCAGCGACCTCGTCTGGACGCAGTGCTCCACCTGCCGCCTTCCCGCCGCCGCCGCCGCCGGCGGCGGCGGATGCTTCCCTCAGAACCTCCCCTACTACAACTTCTCCCTGTCGCGCACCGCCCGGGCGGTGCCGTGCGACGACGACGACGGCGCCCTGTGCGGCGTCGCGCCGGAGACGGCGGGGTGCGCGCGCGGAGGCGGCAGCGGCGACGACGCGTGCGTGGTCGCTGCCTCCTACGGCGCCGGCGTAGCGCTCGGCGTTCTGGGCACCGACGCGTTCACGTTCCCGTCGTCGTCGTCGGTGACCCTCGCCTTCGGCTGCGTCAGCCAGACGAGGATCTCGCCGGGGGCGCTCAACGGCGCCTCCGGCATCATCGGGCTCGGCAGGGGCGCGCTCTCGCTCGTCAGCCAGCTCAACGCCACCGAGTTCTCCTACTGCCTGACACCCTACTTCAGGGACACCGTTAGCCCAAGCCACCTGTTCGTCGGCGACGGCGAGCTGGCCGGCCTGAGCGCCGCCGCCGGCGGCGGCGGCGGCGGCGGCGCTCCGGTGACCACCGTGCCGTTCGCCAAGAACCCCAAGGACAGCCCCTTCAGCACATTCTACTACCTCCCCCTCGTCGGGCTGGCGGCCGGGAACGCCACGGTGGCCCTCCCCGCCGGCGCGTTCGACCTCCGGGAGGCGGCGCCCAAGGTGTGGGCCGGCGGCGCGCTGATCGACTCCGGCTCGCCGTTCACCCGCCTCGTCGACCCCGCCCACCGCGCGCTGACGAAGGAGCTGGCGCGTCAACTGCGGGGCAGCGGCAGCCTCGTGCCGCCGCCGGCGAAGCTGGGCGGCGCGCTGGAGCTGTGCGTGGAGGCGGGCGACGACGGGGACTCGCTCGCCGCGGCGGCGGTGCCGCCGCTGGTGCTCCGGTTCGACGATGGCGTCGGCGGCGGAAGGGAGCTGGTGATCCCGGCGGAGAAGTACTGGGCGCGGGTGGAGGCGTCGACGTGGTGCATGGCGGTGGTGAGCTCGGCGAGCGGGAACGCGACGCTGCCGACGAACGAGACGACCATCATCGGCAACTTCATGCAGCAGGACATGCGCGTGCTCTACGACCTCGCCAATGGCCTCCTCTCCTTCCAGCCCGCCAACTGCAGCGCCGTCTGA
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| Protein seq | MATPLLLLELLCFSMALAGGAALRLELAHVDANEHCTMEERVRRATERTHHRRLLHASTAAAAGGVAAPLRWSGKTQYIASYGIGDPPQPAEAVVDTGSDLVWTQCSTCRLPAAAAAGGGGCFPQNLPYYNFSLSRTARAVPCDDDDGALCGVAPETAGCARGGGSGDDACVVAASYGAGVALGVLGTDAFTFPSSSSVTLAFGCVSQTRISPGALNGASGIIGLGRGALSLVSQLNATEFSYCLTPYFRDTVSPSHLFVGDGELAGLSAAAGGGGGGGAPVTTVPFAKNPKDSPFSTFYYLPLVGLAAGNATVALPAGAFDLREAAPKVWAGGALIDSGSPFTRLVDPAHRALTKELARQLRGSGSLVPPPAKLGGALELCVEAGDDGDSLAAAAVPPLVLRFDDGVGGGRELVIPAEKYWARVEASTWCMAVVSSASGNATLPTNETTIIGNFMQQDMRVLYDLANGLLSFQPANCSAV |
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| Function | Aspartic proteinase nepenthesin-1 [UniProtKB/Swiss-Prot:Q766C3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0375700 | Os05t0375700-00 | Chr05 | 18135817 | 18137269 | - | irgsp1_rep | ||
| CDS seq | ATGGCGACACCTCTGCTCTTGCTCGAGCTCCTGTGCTTCTCCATGGCACTCGCCGGCGGCGCCGCCCTCCGCCTCGAGCTCGCCCACGTCGACGCCAACGAGCACTGCACCATGGAGGAGCGCGTGCGCCGCGCCACCGAGCGCACCCACCACCGGCGCCTCCTGCACGCGTCCACGGCGGCGGCGGCGGGCGGCGTGGCCGCGCCCCTCCGCTGGTCCGGCAAGACGCAGTACATCGCCAGCTACGGCATCGGCGACCCGCCGCAGCCGGCGGAGGCCGTCGTCGACACCGGCAGCGACCTCGTCTGGACGCAGTGCTCCACCTGCCGCCTTCCCGCCGCCGCCGCCGCCGGCGGCGGCGGATGCTTCCCTCAGAACCTCCCCTACTACAACTTCTCCCTGTCGCGCACCGCCCGGGCGGTGCCGTGCGACGACGACGACGGCGCCCTGTGCGGCGTCGCGCCGGAGACGGCGGGGTGCGCGCGCGGAGGCGGCAGCGGCGACGACGCGTGCGTGGTCGCTGCCTCCTACGGCGCCGGCGTAGCGCTCGGCGTTCTGGGCACCGACGCGTTCACGTTCCCGTCGTCGTCGTCGGTGACCCTCGCCTTCGGCTGCGTCAGCCAGACGAGGATCTCGCCGGGGGCGCTCAACGGCGCCTCCGGCATCATCGGGCTCGGCAGGGGCGCGCTCTCGCTCGTCAGCCAGCTCAACGCCACCGAGTTCTCCTACTGCCTGACACCCTACTTCAGGGACACCGTTAGCCCAAGCCACCTGTTCGTCGGCGACGGCGAGCTGGCCGGCCTGAGCGCCGCCGCCGGCGGCGGCGGCGGCGGCGGCGCTCCGGTGACCACCGTGCCGTTCGCCAAGAACCCCAAGGACAGCCCCTTCAGCACATTCTACTACCTCCCCCTCGTCGGGCTGGCGGCCGGGAACGCCACGGTGGCCCTCCCCGCCGGCGCGTTCGACCTCCGGGAGGCGGCGCCCAAGGTGTGGGCCGGCGGCGCGCTGATCGACTCCGGCTCGCCGTTCACCCGCCTCGTCGACCCCGCCCACCGCGCGCTGACGAAGGAGCTGGCGCGTCAACTGCGGGGCAGCGGCAGCCTCGTGCCGCCGCCGGCGAAGCTGGGCGGCGCGCTGGAGCTGTGCGTGGAGGCGGGCGACGACGGGGACTCGCTCGCCGCGGCGGCGGTGCCGCCGCTGGTGCTCCGGTTCGACGATGGCGTCGGCGGCGGAAGGGAGCTGGTGATCCCGGCGGAGAAGTACTGGGCGCGGGTGGAGGCGTCGACGTGGTGCATGGCGGTGGTGAGCTCGGCGAGCGGGAACGCGACGCTGCCGACGAACGAGACGACCATCATCGGCAACTTCATGCAGCAGGACATGCGCGTGCTCTACGACCTCGCCAATGGCCTCCTCTCCTTCCAGCCCGCCAACTGCAGCGCCGTCTGA
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| Protein seq | MATPLLLLELLCFSMALAGGAALRLELAHVDANEHCTMEERVRRATERTHHRRLLHASTAAAAGGVAAPLRWSGKTQYIASYGIGDPPQPAEAVVDTGSDLVWTQCSTCRLPAAAAAGGGGCFPQNLPYYNFSLSRTARAVPCDDDDGALCGVAPETAGCARGGGSGDDACVVAASYGAGVALGVLGTDAFTFPSSSSVTLAFGCVSQTRISPGALNGASGIIGLGRGALSLVSQLNATEFSYCLTPYFRDTVSPSHLFVGDGELAGLSAAAGGGGGGGAPVTTVPFAKNPKDSPFSTFYYLPLVGLAAGNATVALPAGAFDLREAAPKVWAGGALIDSGSPFTRLVDPAHRALTKELARQLRGSGSLVPPPAKLGGALELCVEAGDDGDSLAAAAVPPLVLRFDDGVGGGRELVIPAEKYWARVEASTWCMAVVSSASGNATLPTNETTIIGNFMQQDMRVLYDLANGLLSFQPANCSAV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0375700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g31170 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0954900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0014910 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0014910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0014750 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0014780 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0014930 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0277100 | RBH | 0 | 0.032036 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0014550 | RBH | 0.0 | 0.154634 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0288000 | RBH | 0.019357 | 0.022932 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0014700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0014740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0014760 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0014820 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0014850 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G014470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0014740 | RBH | 0.0 | 0.0 | 0.0 |
