Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0219300 | OGI:05019980 | 2/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:7332186-7334152 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACTTCATGATTGAAATACACAGAACATTTATGGAGGAATCATTTATCACTATTATACCTTCAGCGCCTGGAATATTGATCAAAGGATCGTTGGCTTTAATTAACCAATCTTTCGCACAAATGAGAGCTTCAAGCATTTCAGGTGTTAACGAACTTCGTGTGTCACCAAGTATCCTGCCCCCACAACTGAATGCTAATTCGGAAGATACAGTGCTGAGGGGTATTGCTAGGAAATCTCTGGCCATAGATGACAATACCGGGAATTTTTGAGCATGTCTCTTCCACCAGTCCAAAACATCGAAACTCTCACTATCCTCCTCAACATCTTCTTCTAAATATATGGCAAATTCTGATTTCGTTTGCCGTGCAGTCCTCCTTCGAGACTTGTATAAAGCAAACTCTTCCTCGAGTTTTCTTTTCCCAAGAACAGGTGATCCAACACTGCTGCTGCCTTCACGAGAATGTGAAAGCATGTGTTCATCATTTCTTCTTACAAACCCTTCGTATTTTTCATAATAATCCTTCAACCAATCTTCAGCAGAACCCACTTTTTCTACAATCTCTGTCACACTGTTAGATGTTTTCTCATAAAAGAAATTCAAATAATCTCCTTTTCTTCTTGGATCTAACATTGTGGCAATGACAAGTGCAGAGTTAAACCCACTGTCCCAATATTTGACAAACTTTGAGAGCATAGCTGCAGCCAATACCTTTAAAATATCACTAGTCTGCCAATCAGGGTCATTCAATGCATGACGAATTTGTAGCACCAAGGGCAAGAACCTATGTGCTGTTGGTTTCCTATCTGCTGACACCGATAATGTGGCTTCTTCAAAAACTTTAAGAAAAGCACAAATTGATTCAACTTTCTGCCATTCTAGTTCAGTAGGTGCAACTTCACCATGTTGATTTGCATAGCTATCCAGGACAGATCTGTACATTAATCCTTCTACAATCATTTTATAGGTGGAATTCCATCTAGTCGGTGTATCAAAAGAAAAACTCAACTTCGAAGGAAGATTTTTCGAGTTTGCCATAGAATTGAAATCTTGCATTCTTGATACTGAAGAATCTAAATGCTTCAACAACTCACGTAGCTTGTGTATTGTAGGTTTAATTATCTTCATATCATCCTGAACCAAAATATTTAGGATATGGGCACAACATCTAACATGCAAATGCTGACCCTCAAACATCAATGCATTCTTGTGATTCTTTATCAACTCTTGACATGCAGAATTGTTATTACTGGCATTATCTAAAGTTATAGTAAACAGTTTGCTTCTAATGCCCCAATATGTCAAGCAACTCATTATAGCTTCTTCAATGGCGAATCCCGTGTGGGGATACTTCAATTCCTTAAAGCTTATAATTTTCTTCTTAATGTTAAACTCTCTATCAATATAGTGTGCTGTGACAACCATGTAGCCTATATTTTGAATTGAAGTCCACATATCAGATGTTAGACATACGTGCGAATCAAGATTATGTAATTCAGCATGCAAGTCTTCCCTCATTCGCTCATACAAGTTAAAGGCATCATCACGAAGTGTTTGACACCCCACAACTTTGAAAGTTGGCTGCATGGACTCCACCCACTCCAAAAAATAAGGATCCTCAATTTTCTTGAATGGCACCTCTGCATGAATGAAGAATCTGACCATTAGCTCCCGGCTTCTCTTGGGAACAAACACGAAACCTTCCCCAGTCTGTTTCTTAATTGTTGCAAGGAAGTTGATTCTAGCATCACCATCAATAGCTGGACATGATTCGGCTATGTGATTAATAAGGTGACTTGTTCCTGACTTTTTGGTGGCTGTCAATCTTAAGCTACAATATTTGCATTGAGTCTTGGGACACCATCTATCATTACAACCTCTTGCTGAAAGTGTTCCCATACTTTAGCTCTCTTACGTGTTCTTGAAGATTGATTATTATTTGGACTATTAGTACCTGAACTCTCTGA
More
|
||||||||||
| CDS seq | ATGGGAACACTTTCAGCAAGAGGTTGTAATGATAGATGGTGTCCCAAGACTCAATGCAAATATTGTAGCTTAAGATTGACAGCCACCAAAAAGTCAGGAACAAGTCACCTTATTAATCACATAGCCGAATCATGTCCAGCTATTGATGGTGATGCTAGAATCAACTTCCTTGCAACAATTAAGAAACAGACTGGGGAAGGTTTCGTGTTTGTTCCCAAGAGAAGCCGGGAGCTAATGGTCAGATTCTTCATTCATGCAGAGGTGCCATTCAAGAAAATTGAGGATCCTTATTTTTTGGAGTGGGTGGAGTCCATGCAGCCAACTTTCAAAGTTGTGGGGTGTCAAACACTTCGTGATGATGCCTTTAACTTGTATGAGCGAATGAGGGAAGACTTGCATGCTGAATTACATAATCTTGATTCGCACGTATGTCTAACATCTGATATGTGGACTTCAATTCAAAATATAGGCTACATGGTTGTCACAGCACACTATATTGATAGAGAGTTTAACATTAAGAAGAAAATTATAAGCTTTAAGGAATTGAAGTATCCCCACACGGGATTCGCCATTGAAGAAGCTATAATGAGTTGCTTGACATATTGGGGCATTAGAAGCAAACTGTTTACTATAACTTTAGATAATGCCAGTAATAACAATTCTGCATGTCAAGAGTTGATAAAGAATCACAAGAATGCATTGATGTTTGAGGGTCAGCATTTGCATGTTAGATGTTGTGCCCATATCCTAAATATTTTGGTTCAGGATGATATGAAGATAATTAAACCTACAATACACAAGCTACGTGAGTTGTTGAAGCATTTAGATTCTTCAGTATCAAGAATGCAAGATTTCAATTCTATGGCAAACTCGAAAAATCTTCCTTCGAAGTTGAGTTTTTCTTTTGATACACCGACTAGATGGAATTCCACCTATAAAATGATTGTAGAAGGATTAATGTACAGATCTGTCCTGGATAGCTATGCAAATCAACATGGTGAAGTTGCACCTACTGAACTAGAATGGCAGAAAGTTGAATCAATTTGTGCTTTTCTTAAAGTTTTTGAAGAAGCCACATTATCGGTGTCAGCAGATAGGAAACCAACAGCACATAGGTTCTTGCCCTTGGTGCTACAAATTCGTCATGCATTGAATGACCCTGATTGGCAGACTAGTGATATTTTAAAGGTATTGGCTGCAGCTATGCTCTCAAAGTTTGTCAAATATTGGGACAGTGGGTTTAACTCTGCACTTGTCATTGCCACAATGTTAGATCCAAGAAGAAAAGGAGATTATTTGAATTTCTTTTATGAGAAAACATCTAACAGTGTGACAGAGATTGTAGAAAAAGTGGGTTCTGCTGAAGATTGGTTGAAGGATTATTATGAAAAATACGAAGGGTTTGTAAGAAGAAATGATGAACACATGCTTTCACATTCTCGTGAAGGCAGCAGCAGTGTTGGATCACCTGTTCTTGGGAAAAGAAAACTCGAGGAAGAGTTTGCTTTATACAAGTCTCGAAGGAGGACTGCACGGCAAACGAAATCAGAATTTGCCATATATTTAGAAGAAGATGTTGAGGAGGATAGTGAGAGTTTCGATGTTTTGGACTGGTGGAAGAGACATGCTCAAAAATTCCCGGTATTGTCATCTATGGCCAGAGATTTCCTAGCAATACCCCTCAGCACTGTATCTTCCGAATTAGCATTCAGTTGTGGGGGCAGGATACTTGGTGACACACGAAGTTCGTTAACACCTGAAATGCTTGAAGCTCTCATTTGTGCGAAAGATTGGTTAATTAAAGCCAACGATCCTTTGATCAATATTCCAGGCGCTGAAGGTATAATAGTGATAAATGATTCCTCCATAAATGTTCTGTGTATTTCAATCATGAAGTAG
More
|
||||||||||
| Protein seq | MGTLSARGCNDRWCPKTQCKYCSLRLTATKKSGTSHLINHIAESCPAIDGDARINFLATIKKQTGEGFVFVPKRSRELMVRFFIHAEVPFKKIEDPYFLEWVESMQPTFKVVGCQTLRDDAFNLYERMREDLHAELHNLDSHVCLTSDMWTSIQNIGYMVVTAHYIDREFNIKKKIISFKELKYPHTGFAIEEAIMSCLTYWGIRSKLFTITLDNASNNNSACQELIKNHKNALMFEGQHLHVRCCAHILNILVQDDMKIIKPTIHKLRELLKHLDSSVSRMQDFNSMANSKNLPSKLSFSFDTPTRWNSTYKMIVEGLMYRSVLDSYANQHGEVAPTELEWQKVESICAFLKVFEEATLSVSADRKPTAHRFLPLVLQIRHALNDPDWQTSDILKVLAAAMLSKFVKYWDSGFNSALVIATMLDPRRKGDYLNFFYEKTSNSVTEIVEKVGSAEDWLKDYYEKYEGFVRRNDEHMLSHSREGSSSVGSPVLGKRKLEEEFALYKSRRRTARQTKSEFAIYLEEDVEEDSESFDVLDWWKRHAQKFPVLSSMARDFLAIPLSTVSSELAFSCGGRILGDTRSSLTPEMLEALICAKDWLIKANDPLINIPGAEGIIVINDSSINVLCISIMK |
||||||||||
| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0219300 | Os05t0219300-00 | Chr05 | 7332186 | 7334152 | - | irgsp1_rep | ||
| CDS seq | ATGGGAACACTTTCAGCAAGAGGTTGTAATGATAGATGGTGTCCCAAGACTCAATGCAAATATTGTAGCTTAAGATTGACAGCCACCAAAAAGTCAGGAACAAGTCACCTTATTAATCACATAGCCGAATCATGTCCAGCTATTGATGGTGATGCTAGAATCAACTTCCTTGCAACAATTAAGAAACAGACTGGGGAAGGTTTCGTGTTTGTTCCCAAGAGAAGCCGGGAGCTAATGGTCAGATTCTTCATTCATGCAGAGGTGCCATTCAAGAAAATTGAGGATCCTTATTTTTTGGAGTGGGTGGAGTCCATGCAGCCAACTTTCAAAGTTGTGGGGTGTCAAACACTTCGTGATGATGCCTTTAACTTGTATGAGCGAATGAGGGAAGACTTGCATGCTGAATTACATAATCTTGATTCGCACGTATGTCTAACATCTGATATGTGGACTTCAATTCAAAATATAGGCTACATGGTTGTCACAGCACACTATATTGATAGAGAGTTTAACATTAAGAAGAAAATTATAAGCTTTAAGGAATTGAAGTATCCCCACACGGGATTCGCCATTGAAGAAGCTATAATGAGTTGCTTGACATATTGGGGCATTAGAAGCAAACTGTTTACTATAACTTTAGATAATGCCAGTAATAACAATTCTGCATGTCAAGAGTTGATAAAGAATCACAAGAATGCATTGATGTTTGAGGGTCAGCATTTGCATGTTAGATGTTGTGCCCATATCCTAAATATTTTGGTTCAGGATGATATGAAGATAATTAAACCTACAATACACAAGCTACGTGAGTTGTTGAAGCATTTAGATTCTTCAGTATCAAGAATGCAAGATTTCAATTCTATGGCAAACTCGAAAAATCTTCCTTCGAAGTTGAGTTTTTCTTTTGATACACCGACTAGATGGAATTCCACCTATAAAATGATTGTAGAAGGATTAATGTACAGATCTGTCCTGGATAGCTATGCAAATCAACATGGTGAAGTTGCACCTACTGAACTAGAATGGCAGAAAGTTGAATCAATTTGTGCTTTTCTTAAAGTTTTTGAAGAAGCCACATTATCGGTGTCAGCAGATAGGAAACCAACAGCACATAGGTTCTTGCCCTTGGTGCTACAAATTCGTCATGCATTGAATGACCCTGATTGGCAGACTAGTGATATTTTAAAGGTATTGGCTGCAGCTATGCTCTCAAAGTTTGTCAAATATTGGGACAGTGGGTTTAACTCTGCACTTGTCATTGCCACAATGTTAGATCCAAGAAGAAAAGGAGATTATTTGAATTTCTTTTATGAGAAAACATCTAACAGTGTGACAGAGATTGTAGAAAAAGTGGGTTCTGCTGAAGATTGGTTGAAGGATTATTATGAAAAATACGAAGGGTTTGTAAGAAGAAATGATGAACACATGCTTTCACATTCTCGTGAAGGCAGCAGCAGTGTTGGATCACCTGTTCTTGGGAAAAGAAAACTCGAGGAAGAGTTTGCTTTATACAAGTCTCGAAGGAGGACTGCACGGCAAACGAAATCAGAATTTGCCATATATTTAGAAGAAGATGTTGAGGAGGATAGTGAGAGTTTCGATGTTTTGGACTGGTGGAAGAGACATGCTCAAAAATTCCCGGTATTGTCATCTATGGCCAGAGATTTCCTAGCAATACCCCTCAGCACTGTATCTTCCGAATTAGCATTCAGTTGTGGGGGCAGGATACTTGGTGACACACGAAGTTCGTTAACACCTGAAATGCTTGAAGCTCTCATTTGTGCGAAAGATTGGTTAATTAAAGCCAACGATCCTTTGATCAATATTCCAGGCGCTGAAGGTATAATAGTGATAAATGATTCCTCCATAAATGTTCTGTGTATTTCAATCATGAAGTAG
More
|
|||||||
| Protein seq | MGTLSARGCNDRWCPKTQCKYCSLRLTATKKSGTSHLINHIAESCPAIDGDARINFLATIKKQTGEGFVFVPKRSRELMVRFFIHAEVPFKKIEDPYFLEWVESMQPTFKVVGCQTLRDDAFNLYERMREDLHAELHNLDSHVCLTSDMWTSIQNIGYMVVTAHYIDREFNIKKKIISFKELKYPHTGFAIEEAIMSCLTYWGIRSKLFTITLDNASNNNSACQELIKNHKNALMFEGQHLHVRCCAHILNILVQDDMKIIKPTIHKLRELLKHLDSSVSRMQDFNSMANSKNLPSKLSFSFDTPTRWNSTYKMIVEGLMYRSVLDSYANQHGEVAPTELEWQKVESICAFLKVFEEATLSVSADRKPTAHRFLPLVLQIRHALNDPDWQTSDILKVLAAAMLSKFVKYWDSGFNSALVIATMLDPRRKGDYLNFFYEKTSNSVTEIVEKVGSAEDWLKDYYEKYEGFVRRNDEHMLSHSREGSSSVGSPVLGKRKLEEEFALYKSRRRTARQTKSEFAIYLEEDVEEDSESFDVLDWWKRHAQKFPVLSSMARDFLAIPLSTVSSELAFSCGGRILGDTRSSLTPEMLEALICAKDWLIKANDPLINIPGAEGIIVINDSSINVLCISIMK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0219300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g12780 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0365550 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0013220 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0013260 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0013100 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0013140 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0013230 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0111800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0012880 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0113200 | SBH | 0 | 0 | 0.6200645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0008060 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0013170 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
