Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0140500 | OGI:05006790 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:2331061-2334123 | ||||||||
| Gene Symbol | OsY14a, Y14a | ||||||||||
| DNA seq | AAAAAAAAATCCGACCTTTGCATCGTGCGAGCCTCAAACCCGCGAACCCCCAAACCCTAGTTTCCCCAACCGCGGCGGCGGCGGCGATGGCTGCGGTGACCAACGCCGATGTGGAGGCGGTCGACTTCGACCCCGATGACGACGACCTCATGGACGAGGACGCCGCCGACCCCACGCCGGCGCCCGCCCCGCGCCTCCGCTCCACCATCGCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGACGGGCAACGCAAGACCAAGGGCCGCGGGTTCCGCGACGACGCCGCGCCCCGCGACTCCCGCTTAGCCGGCGCCGGGCGCGCCTCCGACTTCGACTCCCTCGGCTCCGACGGTGGCCCTGGCCCCGTCCGATGTACGTCTCTCTGATTTCCTTTTTTTTTTCTAATTTGCGATGGTAGATTTGTTAGGCATAGTGGTGTAATCTAGTGTGGGATCCTAGCTTCGGCTTGGTTCCCGTCTCGATCCGTTGATTCTTGCTGTTAGATGGACTGGTTTGGATGTCAATCTTGTGCTAAAAGATGAGATCTTCGATCTGATAATTCGAGTGCCTAATTGATTGCAACTTGTTTCTGAGAGGAGATGGTTGAGCTCTTTGATGCGAAAGGTTTGCCTCCTTGTGACAAACGACGGTCTGGAGGTGATTTATTTGGGCGATTTTTGTCGCTGTTATAGGCTCTTTTTGAGTTATTCCTATTGCTAAGCATGTCATATCCTTCTGATTTAAGTAAAGTAGATCCACATCATGCCCTTCATCTCGTTAGAAGGGGTGAGAGTTGTGACCGATGTTGAGTTAAAAGCTTTCGGATGCGTTGTCCTGGTTAATTGGTTAGGGTCTCAGATAGCTGTAGGCTATATGATTTGTTGTCCAGTTGCAACTTACTAGTAATTTTTACTGTATCAGCTTGAGCCTGCGCCATGTAGTAGCTTCTGGCATGTGTGTCGAGCACTGGAGGTTTATTTGTTGTGTTTCTCTTCTGAGCAATTTGTAGTTAAGGAACTGATTCAAAAGATCTAGACTTAGCCAAGAGAGATAAGAATGTGGACTTTTACACTCCTGTAAGTTGGGGTGTTAGCTGCAGTTTTTGTTTGAAGTCTTTGATATTAGAGTTGGCATCTGGACCCTCTTTTTGGTTATTTCTGTTTCTTTCCTTCAGTTGATGTCTCTTATCTGTTTTAATGTTTTCAAATAATCACGGTTGTGCTAACAATTTGCTCTCTCTCCAGTTAGTTTCCAGTGCCTGAATTTTCCTAATCTTGCAAACTTTTGACCATGTTATTTTCAACATCAGTGGAGGTTCAATTTCTGGTTGAATCATGGTTATTTCATGTTTGCATGTCAGTCATGTTCTGTTGGAAATAAAACAAATAGCCAGCTCATATTTAAAGCTTTATTTTCTATAAAGTATCATCTAATGAAACTGTAATGGTGGACATTTAAATTGTGATCTCTTATGCTATTTGTTTCTTCATGGAAGATTCCATTGTTTGAAGATAATTCGTGGCATTGTCTGAGCCCATGCATATTTTGCCTCTTGTTACAGCCATTGAAGGATGGATTGTGCTAGTCACTGGGGTTCATGAAGAAGCTCAGGAAGATGATCTTCACAATATTTTCCGGGACTTTGGGCAGGTCAAGAACTTGCATTTGAATTTGGATCGCCGAACTGGATTCGTGAAGGTTTGTCTTTTTCAATACTGCAATGTGTCTAGCCCTGTTGCAGCCTTGTAAAATTGCTTTTAGTCATAGTTTTTAGGAAATTCTCTTAAATGAGATTCCAGAAAATGTTCCATGATAACGAATAAAACAATCTGCAGAAAGTAGCTCAGTATTTCAGAGGTCCCTTTCTTATCTAATATTGCAAATTGCTACCTTCACTATGCACCATCTTTAGTTTAGAAGAAAATATTATGTTGCATGTTCTCTTAAGAACATTTTAATCTCTTGATTCTATCTTCACGTTTTTTCCTTTCCAGGGATATGCTCTTATTGAGTATGAAACTTTCGAGGAAGCTCAGGCTGCAATAAAAGCATTGGATGGAACTGAGCTTCTAACACAAATCATAAGTGTTGATTGGGCATTTAGTAATGGCCCTGTCAAGCGCAGGAATATTCGGAAGAGGTATGTTTTATGTTAGCTTGTATGCCCCTTTTATTTTGTTATGGCAGAATAATCACACTGTCAGAGGGTTAGGTTTTGTCACATAATCTCTTTTTGAGAGTGAGTATGGCACTTGTTGTAAACTATTCTTTATACCATTTAATCATCCTACAAATTTCTGTGAGGTGGAAAATAGCATGGGAGGAAAGTTGTTTGGCCTTTTTCTTTGTAACTAAAAGTAATACATGCCATAACCATCCCTTGTTTTATTTAATCGGTCTCTGAAAATTATTTGTTCATTTTAACTCTCAACTATGTGCTCGGAAATATATTTGATCTCACTGGCCTGTCCAATTATCATATATGGATAGTATGGCTACTGATTGGTATTTCAGAATATCGAAGTAATTCATTTATCATTACAATACATATGGTCATTGTTCTGACCTAGTGGCAATGTGATAATGTGAAATCCTAAATATTGATTTCTTTTTGTTTCATTTTTTTTCTAATTACACATGTAAAGATTTACACTGTTTCTATTTCCCTGCTATCAAATACTTCTGTTGAAGTCGGAACCACTGACAAGATACATTCACAGTGCAACATGTTGTAAGCATTGGATATCCTCACATGTATGAAATTATAATCTTATTTGGTCACTTGTTCTTGTCAGATCACCAAGACGCTCCAGATCCCCACCGAGGAGAAGATACTGAGTGCTCCCCACCATGTGATGATGGTGCTTTAGAATGCAAGAATTGCTTGTAGGATTCCGGTTGTTTGCTTGGCCTCCTACCGTAGTTTGATTATCAATATTAGCTCGTCTGCTATTTTCAGTCGATGGCTGTGATAGTTCTGTGGCATTGTAACTCTTTTCAGTATATGGATGGAGCTGTGTTTACTGTTCCAAGTTTGGCACGCTAGTTGCCGTGGATTGT
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| CDS seq | ATGGCTGCGGTGACCAACGCCGATGTGGAGGCGGTCGACTTCGACCCCGATGACGACGACCTCATGGACGAGGACGCCGCCGACCCCACGCCGGCGCCCGCCCCGCGCCTCCGCTCCACCATCGCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGACGGGCAACGCAAGACCAAGGGCCGCGGGTTCCGCGACGACGCCGCGCCCCGCGACTCCCGCTTAGCCGGCGCCGGGCGCGCCTCCGACTTCGACTCCCTCGGCTCCGACGGTGGCCCTGGCCCCGTCCGATCCATTGAAGGATGGATTGTGCTAGTCACTGGGGTTCATGAAGAAGCTCAGGAAGATGATCTTCACAATATTTTCCGGGACTTTGGGCAGGTCAAGAACTTGCATTTGAATTTGGATCGCCGAACTGGATTCGTGAAGGGATATGCTCTTATTGAGTATGAAACTTTCGAGGAAGCTCAGGCTGCAATAAAAGCATTGGATGGAACTGAGCTTCTAACACAAATCATAAGTGTTGATTGGGCATTTAGTAATGGCCCTGTCAAGCGCAGGAATATTCGGAAGAGATCACCAAGACGCTCCAGATCCCCACCGAGGAGAAGATACTGA
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| Protein seq | MAAVTNADVEAVDFDPDDDDLMDEDAADPTPAPAPRLRSTIAGGGGGGGGGDDGQRKTKGRGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHNIFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFSNGPVKRRNIRKRSPRRSRSPPRRRY |
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| Function | RNA-binding protein Y14A [UniProtKB/Swiss-Prot:B7FAL5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0140500 | Os05t0140500-01 | Chr05 | 2331061 | 2334123 | + | irgsp1_rep | ||
| CDS seq | ATGGCTGCGGTGACCAACGCCGATGTGGAGGCGGTCGACTTCGACCCCGATGACGACGACCTCATGGACGAGGACGCCGCCGACCCCACGCCGGCGCCCGCCCCGCGCCTCCGCTCCACCATCGCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGACGGGCAACGCAAGACCAAGGGCCGCGGGTTCCGCGACGACGCCGCGCCCCGCGACTCCCGCTTAGCCGGCGCCGGGCGCGCCTCCGACTTCGACTCCCTCGGCTCCGACGGTGGCCCTGGCCCCGTCCGATCCATTGAAGGATGGATTGTGCTAGTCACTGGGGTTCATGAAGAAGCTCAGGAAGATGATCTTCACAATATTTTCCGGGACTTTGGGCAGGTCAAGAACTTGCATTTGAATTTGGATCGCCGAACTGGATTCGTGAAGGGATATGCTCTTATTGAGTATGAAACTTTCGAGGAAGCTCAGGCTGCAATAAAAGCATTGGATGGAACTGAGCTTCTAACACAAATCATAAGTGTTGATTGGGCATTTAGTAATGGCCCTGTCAAGCGCAGGAATATTCGGAAGAGATCACCAAGACGCTCCAGATCCCCACCGAGGAGAAGATACTGA
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| Protein seq | MAAVTNADVEAVDFDPDDDDLMDEDAADPTPAPAPRLRSTIAGGGGGGGGGDDGQRKTKGRGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHNIFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFSNGPVKRRNIRKRSPRRSRSPPRRRY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0140500 | Os05t0140500-02 | Chr05 | 2331147 | 2333901 | + | irgsp1_rep | ||
| CDS seq | ATGGCTGCGGTGACCAACGCCGATGTGGAGGCGGTCGACTTCGACTCCCTCGGCTCCGACGGTGGCCCTGGCCCCGTCCGATCCATTGAAGGATGGATTGTGCTAGTCACTGGGGTTCATGAAGAAGCTCAGGAAGATGATCTTCACAATATTTTCCGGGACTTTGGGCAGGTCAAGAACTTGCATTTGAATTTGGATCGCCGAACTGGATTCGTGAAGGGATATGCTCTTATTGAGTATGAAACTTTCGAGGAAGCTCAGGCTGCAATAAAAGCATTGGATGGAACTGAGCTTCTAACACAAATCATAAGTGTTGATTGGGCATTTAGTAATGGCCCTGTCAAGCGCAGGAATATTCGGAAGAGATCACCAAGACGCTCCAGATCCCCACCGAGGAGAAGATACTGA
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| Protein seq | MAAVTNADVEAVDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHNIFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFSNGPVKRRNIRKRSPRRSRSPPRRRY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0140500 | RBH | 4.439757 | 4.719252 | 10.470255 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04850 | RBH | 2.999057 | 2.905103 | 2.547789 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002840 | RBH | 1.387303 | 42.682301 | 5.421403 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002880 | RBH | 0.567045 | 12.435316 | 3.192951 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002830 | RBH | 2.566238 | 45.147354 | 13.258316 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002890 | RBH | 0.725676 | 2.509866 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002900 | RBH | 18.553396 | 62.879238 | 29.050564 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0034800 | RBH | 24.823181 | 45.532646 | 47.160528 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002700 | RBH | 0.865333 | 3.774410 | 1.739175 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0034900 | RBH | 23.1540345 | 39.973673 | 54.882347 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002830 | RBH | 0.950475 | 0.674979 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002740 | RBH | 3.044220 | 38.855904 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002850 | RBH | 4.393688 | 17.753281 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002870 | RBH | 1.462556 | 3.351005 | 2.639494 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002890 | RBH | 0.963263 | 30.015484 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002760 | RBH | 1.264512 | 15.342175 | 7.138809 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002920 | RBH | 4.711743 | 52.364887 | 12.290063 |
