Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0651000 | OGI:04097680 | 5/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:33179647-33181417 | ||||||||
| Gene Symbol | prx56, prx57 | ||||||||||
| DNA seq | GACAGTACTAATTAGTGATTCCCATTCCCATGCAACTGTGTCATCTCATTTCTAGTTATCTCTATTTGATTACAAACATAATAATTCCAGTAAAACAAGGTCTTGTGCAACACGATTTTTCAGTAGGAACCAGTCTTTGTTCCTTCATCAGATTATTTTTGCGTATAGTAGTGCTACAACCGTTCGAAGCAGACTACATCGCTGAAGGAAAGAAGAACACTTGTACAAACCACATTAACACTGATCACGGTATTAAGAAACCTGACACTAACCAACCACATTAACACTGATCACGGTATCAACCACTTTAATTGACCTTCCTGCAGTTAACCCTGACCTGGCCACCGGAGCCGGTGACGACGCCGATGCCGCCCATCTTCACCATGGCGCCACGGAAGTCGTCGAAGAAGCCGGCCATGTCGGTGGCGTAGGCGGTGGTCTGCGCGTCGGCGGAGCCGCCGCTGAACAGCTGCTGGTCCGAGTGCAGAAGGCCCTTGTTCCTCAGGAGGTTCCTGTAGTAGAAGTTGTCGAACACGTAGGAGGTGGCCGGGTCGAGCGGCGCCGTGTTGTCGTCGCCGCCGGTGGGGTTGGGGCAACTCGGCTTCAGCGAGGTGGCGAGGGTGGCGTCGAGGTTGGTCTCGTTGTAGAGGCGGCCGCGAAAGTTGGTGCACCTGGCTTGCCCGATGGTGTGCGCGCCCGACAGCGCGATCATGTCGCTCGCCGTCAGGCCCTTGTCGGAGAAGGACTTGATCAGGTCGGCGAGGTCGGACGTCGGCGGCGGGAGGTCGTTGTTCGCCGCGTCCAGGCTCGCCGTCGTCCCGTCTCGCCGGCCCAGCTCGACGTCCCACGTCGGCCCGCCCAGCTGCACACAGTTCGTTCGTTCCCGATCAATTCATCAAAAATACAGGGATCGGAGTGGTGATCGGCCGGTCTGGTGCTTACGGCGACGACGGAGTCGCGGGCGGCGACGGCGAGGATGTCGGCGCAGGAGACGACCTGCTCGCAGGCGTCCTCGAGCTGCGACTTGATGTCGTCGACGACCTCGAAGCCGCGGAGGGAGTTCTTGTTCGGCTTCGCGTTCTTCTCGCCGGTGATGGCCGCCGTGTCGTCGAGCAGCACTGACCCGTCACACCCCTGCACGCGCGCGCCGTTTTTGAGGTCAATGGTTAGTCCTTCGAATTTGAAAAGGTTAACTTTTAAGTAGACTTTTCGCGCGCTTTCTGCATGCACACCACTTGCTTAACTGACCCGTCAGCATCCACTCTGAACTTCTGAATTATATCTATTATGATTTATGAACACGGGAAAAATCATCTGAATATAAAATGTTTGGCGACTAGTAACTAAGTAAGTAAACTGTAGCGACTAGCGAATTTCGAAATTGAAACATCTACTTCAAAGGTCGGACTAGAAAACGAGAAGGAAAACTGAACTTAAAAGGGTGAGTTGTGTGAGACTTGCATTGACAAAGCAGTCGTGGAAATGGAGGCGCAGCAGCGAAGCTCCCATGCGAGACTCCTTGGAAACGGCGTCTCTGACGGCAGATTCGATGATGTCGAGCGCGTCGGGGCATGTCTCGTCGTAGAAATCAGTGGAGAGCTGCGCCGAAACAACAGCAGAGAAGAGCAACGCAGCCATGGCAGAGCAGACGAAGATTTGCCTGGAATAAGCCATTGCTTAACCGCAAGCTAAGCACACAATTAAGTATCCAGATACTCTCTCTCTGTAGGCTGTAGCTTCAGTGTCTTTGTTACACTGAACTCTGCAATGC
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| CDS seq | ATGGCTTATTCCAGGCAAATCTTCGTCTGCTCTGCCATGGCTGCGTTGCTCTTCTCTGCTGTTGTTTCGGCGCAGCTCTCCACTGATTTCTACGACGAGACATGCCCCGACGCGCTCGACATCATCGAATCTGCCGTCAGAGACGCCGTTTCCAAGGAGTCTCGCATGGGAGCTTCGCTGCTGCGCCTCCATTTCCACGACTGCTTTGTCAATGGGTGTGACGGGTCAGTGCTGCTCGACGACACGGCGGCCATCACCGGCGAGAAGAACGCGAAGCCGAACAAGAACTCCCTCCGCGGCTTCGAGGTCGTCGACGACATCAAGTCGCAGCTCGAGGACGCCTGCGAGCAGGTCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCCGTCGTCGCCCTGGGCGGGCCGACGTGGGACGTCGAGCTGGGCCGGCGAGACGGGACGACGGCGAGCCTGGACGCGGCGAACAACGACCTCCCGCCGCCGACGTCCGACCTCGCCGACCTGATCAAGTCCTTCTCCGACAAGGGCCTGACGGCGAGCGACATGATCGCGCTGTCGGGCGCGCACACCATCGGGCAAGCCAGGTGCACCAACTTTCGCGGCCGCCTCTACAACGAGACCAACCTCGACGCCACCCTCGCCACCTCGCTGAAGCCGAGTTGCCCCAACCCCACCGGCGGCGACGACAACACGGCGCCGCTCGACCCGGCCACCTCCTACGTGTTCGACAACTTCTACTACAGGAACCTCCTGAGGAACAAGGGCCTTCTGCACTCGGACCAGCAGCTGTTCAGCGGCGGCTCCGCCGACGCGCAGACCACCGCCTACGCCACCGACATGGCCGGCTTCTTCGACGACTTCCGTGGCGCCATGGTGAAGATGGGCGGCATCGGCGTCGTCACCGGCTCCGGTGGCCAGGTCAGGGTTAACTGCAGGAAGGTCAATTAA
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| Protein seq | MAYSRQIFVCSAMAALLFSAVVSAQLSTDFYDETCPDALDIIESAVRDAVSKESRMGASLLRLHFHDCFVNGCDGSVLLDDTAAITGEKNAKPNKNSLRGFEVVDDIKSQLEDACEQVVSCADILAVAARDSVVALGGPTWDVELGRRDGTTASLDAANNDLPPPTSDLADLIKSFSDKGLTASDMIALSGAHTIGQARCTNFRGRLYNETNLDATLATSLKPSCPNPTGGDDNTAPLDPATSYVFDNFYYRNLLRNKGLLHSDQQLFSGGSADAQTTAYATDMAGFFDDFRGAMVKMGGIGVVTGSGGQVRVNCRKVN |
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| Function | Peroxidase 4 [UniProtKB/Swiss-Prot:A7NY33] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0651000 | Os04t0651000-01 | Chr04 | 33179647 | 33181417 | - | irgsp1_rep | ||
| CDS seq | ATGGCTTATTCCAGGCAAATCTTCGTCTGCTCTGCCATGGCTGCGTTGCTCTTCTCTGCTGTTGTTTCGGCGCAGCTCTCCACTGATTTCTACGACGAGACATGCCCCGACGCGCTCGACATCATCGAATCTGCCGTCAGAGACGCCGTTTCCAAGGAGTCTCGCATGGGAGCTTCGCTGCTGCGCCTCCATTTCCACGACTGCTTTGTCAATGGGTGTGACGGGTCAGTGCTGCTCGACGACACGGCGGCCATCACCGGCGAGAAGAACGCGAAGCCGAACAAGAACTCCCTCCGCGGCTTCGAGGTCGTCGACGACATCAAGTCGCAGCTCGAGGACGCCTGCGAGCAGGTCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCCGTCGTCGCCCTGGGCGGGCCGACGTGGGACGTCGAGCTGGGCCGGCGAGACGGGACGACGGCGAGCCTGGACGCGGCGAACAACGACCTCCCGCCGCCGACGTCCGACCTCGCCGACCTGATCAAGTCCTTCTCCGACAAGGGCCTGACGGCGAGCGACATGATCGCGCTGTCGGGCGCGCACACCATCGGGCAAGCCAGGTGCACCAACTTTCGCGGCCGCCTCTACAACGAGACCAACCTCGACGCCACCCTCGCCACCTCGCTGAAGCCGAGTTGCCCCAACCCCACCGGCGGCGACGACAACACGGCGCCGCTCGACCCGGCCACCTCCTACGTGTTCGACAACTTCTACTACAGGAACCTCCTGAGGAACAAGGGCCTTCTGCACTCGGACCAGCAGCTGTTCAGCGGCGGCTCCGCCGACGCGCAGACCACCGCCTACGCCACCGACATGGCCGGCTTCTTCGACGACTTCCGTGGCGCCATGGTGAAGATGGGCGGCATCGGCGTCGTCACCGGCTCCGGTGGCCAGGTCAGGGTTAACTGCAGGAAGGTCAATTAA
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| Protein seq | MAYSRQIFVCSAMAALLFSAVVSAQLSTDFYDETCPDALDIIESAVRDAVSKESRMGASLLRLHFHDCFVNGCDGSVLLDDTAAITGEKNAKPNKNSLRGFEVVDDIKSQLEDACEQVVSCADILAVAARDSVVALGGPTWDVELGRRDGTTASLDAANNDLPPPTSDLADLIKSFSDKGLTASDMIALSGAHTIGQARCTNFRGRLYNETNLDATLATSLKPSCPNPTGGDDNTAPLDPATSYVFDNFYYRNLLRNKGLLHSDQQLFSGGSADAQTTAYATDMAGFFDDFRGAMVKMGGIGVVTGSGGQVRVNCRKVN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0651000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g55740 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029040 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028320 | RBH | 0.0 | 2.155986 | 0.511694 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013910 | SBH | 0.0 | 52.572418 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027810 | RBH | 0.0 | 0.208416 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032360 | SBH | 0.0 | 80.167061 | 5.450377 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0523200 | RBH | 0.063114 | 5.086837 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026750 | RBH | 0.077591 | 1.273490 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0528100 | RBH | 0.12892 | 46.657299 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027150 | RBH | 0.0 | 0.194882 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013010 | SBH | 0.0 | 30.829306 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013020 | SBH | 1.671914 | 188.232285 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027570 | RBH | 0.000000 | 0.191441 | 0.184610 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013770 | SBH | 0.0 | 74.162704 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028510 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026870 | RBH | 0.0 | 7.526243 | 1.258884 |
