Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0650900 | OGI:04097650 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:33170262-33177295 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACAAAAATCTGAATATCATGTATACCGAGCCTGCAGAAACATGTTCAGCGTAGTAGGTACAGCGGATTTACCGTCTCAGCCATGCCAAATACGGATACAGTACAAATAGAAATAGACTAGTATCGACGACACTGTTTCGTTTCATGTTCATGAAAAAGAAGGCATTACAGCTGCAACAACCCCAGTTCATTTACCAAGGTGTATTCTTCAAATTTCGCAGTCGTATAATACCTTCTGGCTGAATTAAGTCAGCGTCGTGCAGGTACTTCTTGTAAAGTGTCCGGGAGATGTTCAGAGCGTCTCCCGTAGCTGTGGTTGGAAAGACCTTCCAATCGCTCTGCCAGTTGTTTGTGAGGCTAATCCATTCCCTCCTCCATTCCTCCAGAGCAAAAGGTTCTTTTTTCTCCATGCTCAATATTAAGTACTTGAAGTAGATGGCAGCCCTTGGTCCATAGTAGTCTCGCAGCAGGCCGCTCCAGTATTTATTTGCTGCGTGAAACTTGTTAGGAAAAGAAAATCACAGAAAAACGGTACAGAGGCTATAGTGTGTGAATGGTATGTGCCTCACCATAATCACGAAGCAGGCTAGCTTTCGTTTTGGTGTTGTCAAACCACATCGTAATTTGTGTTCGAGCATTCCACTCATACTGCACCGAATTAGAAACAGTTGTACATCAGCAATGCTATGAATGATGGTGGGAAAGTTTCTGGAATTCAAGTACTTTGAAAGAAAGAAGTGCTTAGGACGTCAGGAAAAAAAAGGACACCTGCATTTCTTGCTCTTTATCTCTGGCAAGACCCTTGGCACTTTCCAACCAAGGGCCAAGAAGAAATCCCTCATGGGAGGCCAACAGTGTGTCTAGGTCATTAACAAGGTCAATGAAGTGCTGACAGAGATTGCTCACTTGGTTCACGTTGTTTGATTTGTAGCTTTCAATGATCTTTACAAAGACCTGGTTGGCATATTTAGCCAGAGTTTGACGAGTTAAATCCACAAGGTCATACCTGTTAATGTAAAAAAATGATTTAAATTAACGCCACCACTTGATGCTACAAACATATACTCCCTCCGTCCCTAAATATTTGACGTCGTTGACTTTTTTAAATATATTTGACTGTTCGTATTATTCAAAAAATTTAAGTAATTATTAATTCTTTTCCTATCATTTGATTCATTGTTAAATATACTTTTATGTATACATATAGTTTTACATATTTTACAAATGTTTTTGAATAAGACAAATGGTCAAACATGTTTTAAAAAGTCAACAGCGTCAAATATTTAGGGTCGGAGGGAGTATATGGCTTGTCATTCCATTATCTGAAAAATATGACTTTCTCTTAAAATTCATATAATATTTTTAATCCAGTCATTCAGAAAGCACTGGCATTAGTACTAACTAGAAAACCTGCACTCTCACCTGAAGGTATTGCTGTCAGATACTTCATCTCCATATCGAAGAAAAAGCTCTAGGGCACGTATAACAGCATCGGTGTCATACCATAGATGTGGATGTTCATATTCATCATTGGATGCATCCACTGCAATGTAATTCTTAGATAACTTTGTCGAATACGTTTTGCTACTACTTGTATACAATCCTGGTGTTTGAATAACAAAAGGTTCAACATCTGGGAATGCCACTATCACATCCCTATTTTTGTCCTGTAGCCAAAAGAAAAAAGCTAAAATATCAGAAACGAAAACAATCAAAGTTCTGAAAATCATAGGACTATGAGTAAATTTATATGTGCTTCCATTCAAAATATATTGGATTACACAGAATAAGCTGTAACTTCTACAAAATAAAGATAAATTTTAGATTATTAATTGTACTAAAAGATACTTCCTCCGTTTCACATTATAAGACTTTCTAGCATTGCCCACATTTATATAGATGTTAATGAATCTAGACATAGAAAGCCTTATAATATGAAATGGAGGGAGTAATTTATAGTTTTTCCACTTCACATGACTGCCATTCCTATATATGTCTGTCTATCGTTGGATGAAAATAGATACACGTTACAATCGGTAAATATGACACATGGAGAATATCAAAGCTTACATTTTTACCATCTGTGCAATTATAAAGAGTTTGGTATAAAATTTTCCAAGCATCTTGCAGCCCCACCATTGACTTCCCATATCTTCTTGTTGGATATGTCTCAACCCACACCTGGAAATAATGAAAATCTGATCAAGCCAAAACTAGCCACACTCATTATCAAGCTCAGAGAGAAAAGTTCAAAGCAATAAAAACAAGAAAACCACATAACAAGTAGCATGGCTCATTTGCTGCAAAGCATAACCAGACAACCTGACACACCAGTTAACTCCAAAATGTATACCAAACAGCAATCTATACTGTTTCTTAAGGACATCAGATGATGCTATAAAGCACATGCAAATTATTAAAAAAAAGAGAGAGAACACATATAGTGCAGATTAAGTGCTTCCAGAAAATGGTTTGTATAATTTCACCTGTAGATCCACTTGTCTGTGATGAAAGGCCATTTCCGACATCAGGTCATAAACAATAGGATTTTGCTCAATACCTTCCATAGACATGCCAACTCCAACCTTCAAACACAAGTAGTTCAATTTTTTTTATAAAAAAAAACAACTTAGTAAAAAGACTAGCATATGTCATAATTCTATATGCTAACTTACTAGAAGAAACAGCTGATTAAGTTAATGGTGTACCATTGTAGAGTTCGCACTTAGTCGAGCATCAATCGGCCCAGAAGCAACCATATCCAAAACACCGTACATTTCAAAGTCCGCAGCAAAATTATGAAGCATGCACCTGGATTAAAAAAAAGTAGCATATGAATTCCTCTAATACAAAAAAAGGAAAGAAAAAAAAACAGTAGAGAGAAGGAGAACTTTCCAGATGTAAGGGACACCATAAAACTGATCAGAGTTGATCCATATTGGTTTCACTTCTGCATATAGATCAAGAACAATCATTCGGCCAACTGGAACAGAATGCAGCAGTGCCTAACCACCAAGGAATTTGATGTTAAACATATGACTAGAAAAGTAAAAGCTGCATGCTTGAAATAGGGAAGAACAATAATTTATTGATGTAGTAGCCAGAAACACCCCATGTTCGTGTTCACAAGTTGTTCTCCTTTTCACCAGAAAAGTTGCAGAAATTATGCACTTAAGGATTTGACTTAAAGATAAGAAACAGAGTTAGTTTGTGCTCTGTATTAGAACAGCATTGCTTTAAGTTTGTGATTAGATGCCAGTTGTAACAGTCGATTTTGCTTATGTATAGCCTGAACATATTTTGCTACAAACAACAGGTCTATATCACTGCAGACATGGATTTCTCAATTAACATAAGACGACTGACAAAAGACTTGCTAAACCAAATGAAAAGGTATCACCTAACAACATATGATTACCTTTTGTTATATCAAACATCCTAACTCTCTGACATAACTTATCTAAACATCTTAACATATTCATAAAAGTAGAACTGTACATACAAAAACTAACGATAAAATTTCACCTTCATTTGTGGGGGTTCCCAGAAAGGATCATAAGAAAACAACCAACCCTGCAAAGAATAATGCATGTTAGAATTGCATATCGAACTAATCAAGGATGTTTTCATACAAGAAGAAAAATCTTGACGACTGTATAGGAAAATTATGGATCTGGATAAAAACCAAGGAAATGGTTTCTACAGACCAATCCATCTACTTACTTGCATTAACCAAATAGCATCATCATCACCGCTTTGCATTCCCCGGAATGTTGCAGCACCCAACGAAGAGATATAATTTGGATCGCTTAGCGGAGGGGTGTTCTCATCAAAAGTATCACTAGATGGATTGAAGATGTCATCAAAATAAAAATTGGCATGCATAAAATGGGAATCACTAATAATGCAGATTATAGAAACCATACCAGCTGTACACATGACTTGTCCCACCATATTCTGCAAAGAACAAGAGAACCTCTCGTACATGTTAATATTAACAATTTTGTGTTATTCTTCTGTTTTTACCATGGAATATAAAATGTCGTGGAAGGGATTAATGAAACAAGTTATTCAATGAATAATAGGTGAATACTGCACATCAACACTTGTGCTGATGACTACTACTCTCTACTTAAATGAAAAACCAACACTTGTGGATTAAACAAAACTGATTGGTTACGGTGTGTTCCTCTAAGGAATAGAATGGGGGATAAATGCGCACGCTTCCCAAGCTCCTAAACTGTGTGATTTTTGCAGATACTTTCTATATATGAATTTCTTAGAAAGCTGTTTAAAATCCATTTTTCAACTTTGTAATATTTAATTAATTCGTTTGTACCCTCGAATAATTATCACAAACAATTCAGTTATTCTCAGCACAAAAATACACAAGTTAGAAATACAACCAGTGAAAAATAGTGAAACTTAGGAATATCTGCTGTGAACTTTTCTAGTTAGGAATTTAGTTTCAGAACTAAAACATGACTTTAGGTCTGATACTGAAGCACCATTAATTAAGTAGTGGAAATCATGCATTATACCTCTGATTTGTTCTTCAATAAAAAGCTTCCCAATTTCTACAAATAAGGGATCAGATGCATCCAGAAGATATGTGCAACACCACCTGGGGTTGCTGTCAACTGTGAACCTTAATATCAAACAAGAGAATCAAATAAGCTCATTTAACTTCAATATAGCTGCAAAATCAACATAAGTGAATACATGTATAAATCATAAGACTGTGTTAACCAACAGTGTTGGAGAAAATGGCTGGCATAAATTAAGAAAATAGAACTCACTCTACTTCACTTTATAAGGCTTATTTTGGCCACGTGTGGACAACATTACAGAGATGATAAAGCCAAGAGAATAGTGGTGACAAATGACCATGAAAGCCATGGTGCTAATGTCTCAGGAGAGAATAGTTAGTGTGTATGTTTTCTAATTTTGTAATAAATGTTGAAGAGAGCAGGAAAGATAAATGAGGGTGTGCGCGCACAAGAGAGAGCCTAATTCTCCATGCATGCCTTATATTTTGAAATATGTTTGCAAAAACTATGGGCCTTATATTTCTAAATAGATAGAGTAATATTTATTTTATTGATGAATGATACAAAGATGCGCCTGTAGTGAAATGAGATGACCTAGAATATATGCCGTTATGAATCTGAAGTACAACTGTTTCTGGGAAGAAAACAATAATTTGTTGAATGATTCAAGATTGATTTAATCAACAATTAAAAGCACTCAGATGTGCAAGACATGCAGAATATTGAATGGAAATTTATTATGGCATATTGAAAATATCACCAAAAGACAATGTTGGTGAATAGCGATATACTGTAAAACTTATATGAGCAGATGTGCTAGGAATTGAGCAGTAATACATAAATCCAAAACTGCAAGTATAACTTTATATGATTAACAATCATTTCAATACAACAAAATTCAAATCAAGAACTTTTAGTTAGGAAACCATTCTCACCAGTTCCCAAGGTGAGTAACTTTAGCTGAAGGAAATTTTGATCTTAGTGCGGCCGGGATGTTACCAGAAAAGGCTGGAAGAACTGCAATCATGTAAGATATTAGACAACTTAAAATGTAAAATGAACAGGGGTCAGCGTTTAACAACTAGAAAGGGCAAACTGCATACTTGTTTATTTAAATTATCTGATTTTAGCAGAGAAGTTCTGAAAGAAATGGCAGGAGAGAAATCCAAACCACTATATTTTCATGAGATCACATAATATTAACTATGCTAAATAATCTACTGTAAAACATATGCATGCTTATGTAATCACAATACCACATAAAGACCATGCACTAAAAAAATGCAACTGTTTTGCATCACCTGGGAACATGCCAAAAGCATACATCCTAGAAAGGATTTTCTTCTGAAGAGCTAGCTGATCATCAAGCCAGCTTTGAGGAAGAGGTCCGCCCCATCTGATAAATCAATTTGTCACTACATGTTCTTTGAGCTACAGTTCCTTGCAACAAAAATTGAACTCATAGCAAAACACTAATATGAAACATCAATATAAGTCATATTATCAACATGGTGGCTTGTATAAATCTCTCATAAAAAAGGGACTTATAAGTTCATCTTACAACCGATAAGCTAACTGTTTCCAGCAACTACCCCCTTAGTTCGGGGGGGGGGGGGGGGGGGGGATACTGTCCACAAGACAAAACTACATAAATTGAGTCGCAGCTCTATCTTTTAGTAAAATAGTTTTGCTGGTGGTAGTTCCAAATTTCTATTGTCCTGGTCTCACAGCTAAGGAATATTTAAAGAAATTAAAAACAGACCGCATTCTTGTTAAATTATGTAAAAGAACAGTTTATCGACTCACAATACGGTAGTGTGAATCATTGGAATAGTCCAACGTGAAACATAACTACATAAGCATGACTTACCCATGCATATTGGCCATCCGAGACCATGCAAGAAATGCTGGCCCGCCAAAGAAATCATCCAGGTCTGATTTACTAATGTTGTACCTCTGCAAGAGCGTACAAAGAAGGGGTGGAGTTGTAAATCAATATGTTACGAAGAATATACACCACAGTATGCCCATGTCAAATATAAACAATGCAGCATGGCACTACACTTAATCTGATGATATTCTTTCCTGCCCACTTAGAGATAAACCGTTTACTAATCTACCTCTCAAGCAGTACTCAGTATATTACACAAATACATCAATAGCAGCTAAAATTTCTGCCTAAGATCTTGGGATGCTTTGTATCCCTCCAATTTATTAATATGACGATGGTTAGTTAAAAATATGGAGGGAGTAACAGAGTTTAAACATTTTTTGATCTAAGAACACACGGACATTGCATAGATCAAAATATTCAGTATCAGTGAACAGCAAGCTTTTTTAATAAAAGAGCAGAACACACACGCACCTGAAAAACTTTCTGCCATATAGCTTCTTGACCAGTGAAAGCAAGAGGCAAATTGATACCTTGAAGAGCCATCCAGTCAATTTCCTTCTCCCAGCGCTCCCAATCCCACCAAGCAAAAGA
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| CDS seq | TCTTTTGCTTGGTGGGATTGGGAGCGCTGGGAGAAGGAAATTGACTGGATGGCTCTTCAAGGTATCAATTTGCCTCTTGCTTTCACTGGTCAAGAAGCTATATGGCAGAAAGTTTTTCAGAGGTACAACATTAGTAAATCAGACCTGGATGATTTCTTTGGCGGGCCAGCATTTCTTGCATGGTCTCGGATGGCCAATATGCATGGATGGGGCGGACCTCTTCCTCAAAGCTGGCTTGATGATCAGCTAGCTCTTCAGAAGAAAATCCTTTCTAGGATGTATGCTTTTGGCATGTTCCCAGTTCTTCCAGCCTTTTCTGGTAACATCCCGGCCGCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTGTTGA |
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| Protein seq | SFAWWDWERWEKEIDWMALQGINLPLAFTGQEAIWQKVFQRYNISKSDLDDFFGGPAFLAWSRMANMHGWGGPLPQSWLDDQLALQKKILSRMYAFGMFPVLPAFSGNIPAALRSKFPSAKVTHLGNC |
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| Function | Alpha-N-acetylglucosaminidase [UniProtKB/Swiss-Prot:Q9FNA3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0650900 | Os04t0650900-01 | Chr04 | 33170262 | 33177295 | - | irgsp1_rep | ||
| CDS seq | TCTTTTGCTTGGTGGGATTGGGAGCGCTGGGAGAAGGAAATTGACTGGATGGCTCTTCAAGGTATCAATTTGCCTCTTGCTTTCACTGGTCAAGAAGCTATATGGCAGAAAGTTTTTCAGAGGTACAACATTAGTAAATCAGACCTGGATGATTTCTTTGGCGGGCCAGCATTTCTTGCATGGTCTCGGATGGCCAATATGCATGGATGGGGCGGACCTCTTCCTCAAAGCTGGCTTGATGATCAGCTAGCTCTTCAGAAGAAAATCCTTTCTAGGATGTATGCTTTTGGCATGTTCCCAGTTCTTCCAGCCTTTTCTGGTAACATCCCGGCCGCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTGTTGA
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| Protein seq | SFAWWDWERWEKEIDWMALQGINLPLAFTGQEAIWQKVFQRYNISKSDLDDFFGGPAFLAWSRMANMHGWGGPLPQSWLDDQLALQKKILSRMYAFGMFPVLPAFSGNIPAALRSKFPSAKVTHLGNC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0650900 | RBH | 0.651594 | 0.618723 | 1.760888 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g55730 | RBH | 0.237469 | 0.302270 | 0.330819 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029030 | RBH | 0.276808 | 52.971439 | 1.672687 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0029810 | RBH | 0.686326 | 18.431408 | 1.848722 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0029420 | RBH | 0.0 | 50.348789 | 5.922308 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0029240 | RBH | 0.049661 | 0.618873 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0029500 | RBH | 2.981232 | 24.482988 | 6.493684 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0523100 | RBH | 5.4320215 | 25.00587 | 8.6441535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0028140 | RBH | 0.018311 | 1.792559 | 0.855553 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0528000 | RBH | 3.9537595 | 6.553762 | 7.162584 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0028580 | RBH | 0.067242 | 0.463764 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0028420 | RBH | 0.453779 | 22.432758 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0028530 | RBH | 0.856316 | 50.210560 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0029130 | RBH | 0.103433 | 6.224002 | 0.282157 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0029100 | RBH | 0.029396 | 30.200863 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028500 | RBH | 0.337958 | 2.230434 | 0.646293 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0028340 | RBH | 0.622392 | 88.330750 | 4.791041 |
