Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0619400 | OGI:04092660 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:31463105-31466291 | ||||||||
| Gene Symbol | RLCK160, OsRLCK160, PTK6, OsPTK6 | ||||||||||
| DNA seq | GATGTGAATCGTGCAGAGCTTATCTTTGAGGCTTTGAACATCTTCATTTCGAGATATTTACACCCAGATCGAGAAGCAATACGCTGCCTATCTTAAACATCTCCTCGTCACAAAAATCAAACAAACACGAAACTCTCTCCAAAAAGAGAAAAAAAAATTGAACGTAATCCTATCCCCTTTCGGAGCAATAATATACAAACACAAAAAAAACACTAGTCCTGTCTCCACATTTCCAGTTCTTCTTCTTGTTTTTTTTTTTCAGATAGACGTCTGCGTCGGCGTCTCTGACGATGAGAAAGGCTCCGTTTCATCAGTGGTGCTGAACGATCTCATGTTGGATGACCGTGTTGTCTCGTTCTCCTTCTGCTGGCTGCTGCTGACCTTGAGGTCGGCGAAGTCGGTGATCATGGCCGGCCTGGTGATCCGGTGCACCGAGAAGTGCTTCTCCCCGGTGAGCATCCTGACGACGGTGCTCATGTTGGGGCGGCGCGCCATTGCGTCCTGTGTGCATAGCAGGCCAATCTTCAGGAACCGGCATGCCTCGTCGACGTCCAGGTCATTCCCCAGGTCAGCATCGATGATCTCAGCCAGGCGTTCTTGCTCGTAGCGTACCCATGTCTGCAGGTTTTCTCGCATTCAGTAATGTTTCTTTGTATGGTGGATTTGGTGGTAAGTTTCTAATTTAGTTGATTATATGAGAAGAAAAAAACTGAGTTCATTTTGTTGTTTACAGTTTGATGATGGGAACTTACCCTTTCGAGAAGAAATTGATCTTCATAAGGCAATCTTGTGTTGGTGTTGCATCTGCCGCTAACGATTTCCAGTAGAAGAACACCGAAGCTATAGATGTCGGATTTCTTTGTCACCTGGCCTCGGATAGCGTATTCAGGTGCCAGGTATCCTCTGAACAGAAGTGAATTTCAAGTCAGAACGAAAGAACTTTCCGATGTAAACCGAGTAAATAAATTTGGATTTAGTTATGCTTACAATGTGCCTGCAACTCGGGTGCTCACATGAGTTGCGTTGGGTGGAAGGAGCCTTGCCAATCCGAAATCAGAAATTTTTGGGGTGAGGTCCTTGTCAAGAAGAATGTTGCTCGCCTTTATGTCACGGTGGATAATCGGAGGGCGAATTTCCTCATGTAAAAATGCAATTCCACGAGCAACACCCACAGCAATTTTTACACGGGTCCTCCAATCGAACCGGATGTTGCTACCCCTAGATCCTGTAATATCACAGCCAGAACATTTGTAAGTATGGCAGCGAAGGAAGGAGTTGGTAAAGGACAAGTTCGGGAAAATAATGTGTTACTACTTGCTTTTTTTAAAAGAATAATGTGTTACCTAGCAATGTCTGTGCAAGACTGTTGTTCTCAAGATAATTGTAAACAAGGATCCTATGAGATCCTTCAGCACAGCAACCAATAAGTGTGACGAGGTTTTCATGCTTGATGTCAGAAATTGCTGTAAGTTCAGTCAAGAACTCTCGGACGCCTTGTCTTGAAGTAGCAGACAGCACCTTTACGGCAACGGTTGTCCCATCTCTAAGCACTCCCTGATTAACAAAATGAAATGTAAGATGATTTGTTTTGACACTATGGGCATGAGACACTGATAGGGTGAACAAAATGTAAGACATATTTACCCTGAACACAGAGCCAAAACCACCCTCTCCAATCTTATTTGCCCCACTAAAATCATGGGTAGCCTTTCTCAACTCACTGTAAGAAAATATCTTCACTCTATGTTCACCTGGAACAACAAAACAACAAACTCAAGCATGTAAGAATGATGAATTGTTTTGAACAATACAGGTAAGAAGCGTGCTAATATACAAACGCTGCTCACCATCATCACCTTCAACAGGTTGTTTTTTTCTGAACATAAAGCAGCAATCCATCTGAAATCAAATTGTAGAGGTGCCCACAGGCCACAAGAAGCAATGAATTGGAAAGAATTTCTGCAGAGCAAAGGTAAATAGCCATCAGAACAACTGTAAATTCATATTGCAACAATAAACTAACGTAAAATGAGGTGTACAGGACTCTTAGCAAGTTAATGACCCCACATGCCAGTTGTTATTGTTTAAACAACAATTTGCGCATCGATAACCACCAACTGCACTGAAACCACATCTTTGCTTGTTTGATTAATGGCTCAAGTTACTATCAAAAAGTCTACATTTAGTACGATGGAAAGAAATAAAAATGTGAAACCACCCAAGAAAGAAGATGTAAAGAGACTTAAAACCAAGTCAAGGCAGAAGTCATCCACCCCATTTGCTGAGCAATTTGAAGAAAATGAAACGTCGGTTGCCACAAGCAACCTTAATCCTGTCTTTCTGAAAGGAATAGCGCCTGATAGACCCAACGGACCAACTATCCCCGTTGACGAGTGGAAATTTTGCAGCAACCAAACCCGTTGGAAATGAATTTCGATTCAGATATAGAGCAAAAGCCTGTTAATTTTCAGTAATACTAACTATCTATAACTAATTCCGCAATTGCACAGCAGTTGAGTAACTATTTATACTTTTGTAGTACAAGAAAGCAACAAGCTGCATATTCCCATACGCCGATGAGTAACTAGCATTTCCTTCAAGCCAGGATTTGCCTCATAGCTTTACCTAACAAAAATCGGATTTGCAGCTACAGAAACCAAATCTTGCATGCATCAAAATGAGATGATGCATCACAAACACAAGAAAAGGTATCCCCTTTCTACTTCCCGCTGACCTAAACCAAGCATCACATCCATGGAACTCGATTTCGTAGAACGGGAGGAGGTCGCTCCCGCAAAGGCGCAATCGATCCCCAATTTCAAGCAAATAGAGAGCGAGGAACCCAGCAACATACTCCTCCACATAGAAACAAATGTAAAAGCCTAACGAGTTCTTGGTCATCCTCACTCAAACGCCCCCAAATTAGGAACCAAACCAACCACCAACCAATCCAAACCAGAAAAATAAAAGAAAAAGAAAGAACTCCACACACACAGACAACAAGAACGCAAGAATCACCTGCAGAGCAAGCAGATCGAGCCCCGGCAGTGAGAGCAAAGCAAGCAGCTACACGCCGACCAACCCACAGGGTGAGGAGAGGCGAGGAGAGGAGGCAGGAGAGAGCGCGGAGGCGGCGCTAGTGGTTTAAGAGGGGAGGAGAGCGCGGCGTGGGGAGGAAGAAGGTGAC
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| CDS seq | ATGGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTGAAGGTGATGATGGTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCCATGATTTTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTTCAAGACAAGGCGTCCGAGAGTTCTTGACTGAACTTACAGCAATTTCTGACATCAAGCATGAAAACCTCGTCACACTTATTGGTTGCTGTGCTGAAGGATCTCATAGGATCCTTGTTTACAATTATCTTGAGAACAACAGTCTTGCACAGACATTGCTAGGATCTAGGGGTAGCAACATCCGGTTCGATTGGAGGACCCGTGTAAAAATTGCTGTGGGTGTTGCTCGTGGAATTGCATTTTTACATGAGGAAATTCGCCCTCCGATTATCCACCGTGACATAAAGGCGAGCAACATTCTTCTTGACAAGGACCTCACCCCAAAAATTTCTGATTTCGGATTGGCAAGGCTCCTTCCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATTAGGATACCTGGCACCTGAATACGCTATCCGAGGCCAGGTGACAAAGAAATCCGACATCTATAGCTTCGGTGTTCTTCTACTGGAAATCGTTAGCGGCAGATGCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGGACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGACCTGGGGAATGACCTGGACGTCGACGAGGCATGCCGGTTCCTGAAGATTGGCCTGCTATGCACACAGGACGCAATGGCGCGCCGCCCCAACATGAGCACCGTCGTCAGGATGCTCACCGGGGAGAAGCACTTCTCGGTGCACCGGATCACCAGGCCGGCCATGATCACCGACTTCGCCGACCTCAAGGTCAGCAGCAGCCAGCAGAAGGAGAACGAGACAACACGGTCATCCAACATGAGATCGTTCAGCACCACTGATGAAACGGAGCCTTTCTCATCGTCAGAGACGCCGACGCAGACGTCTATCTGA
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| Protein seq | MDCCFMFRKKQPVEGDDGEHRVKIFSYSELRKATHDFSGANKIGEGGFGSVFRGVLRDGTTVAVKVLSATSRQGVREFLTELTAISDIKHENLVTLIGCCAEGSHRILVYNYLENNSLAQTLLGSRGSNIRFDWRTRVKIAVGVARGIAFLHEEIRPPIIHRDIKASNILLDKDLTPKISDFGLARLLPPNATHVSTRVAGTLGYLAPEYAIRGQVTKKSDIYSFGVLLLEIVSGRCNTNTRLPYEDQFLLERTWVRYEQERLAEIIDADLGNDLDVDEACRFLKIGLLCTQDAMARRPNMSTVVRMLTGEKHFSVHRITRPAMITDFADLKVSSSQQKENETTRSSNMRSFSTTDETEPFSSSETPTQTSI |
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| Function | Cold-responsive protein kinase 1 [UniProtKB/Swiss-Prot:Q93YN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0619400 | Os04t0619400-01 | Chr04 | 31463105 | 31466291 | - | irgsp1_rep | ||
| CDS seq | ATGGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTGAAGGTGATGATGGTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCTACCCATGATTTTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTTCAAGACAAGGCGTCCGAGAGTTCTTGACTGAACTTACAGCAATTTCTGACATCAAGCATGAAAACCTCGTCACACTTATTGGTTGCTGTGCTGAAGGATCTCATAGGATCCTTGTTTACAATTATCTTGAGAACAACAGTCTTGCACAGACATTGCTAGGATCTAGGGGTAGCAACATCCGGTTCGATTGGAGGACCCGTGTAAAAATTGCTGTGGGTGTTGCTCGTGGAATTGCATTTTTACATGAGGAAATTCGCCCTCCGATTATCCACCGTGACATAAAGGCGAGCAACATTCTTCTTGACAAGGACCTCACCCCAAAAATTTCTGATTTCGGATTGGCAAGGCTCCTTCCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATTAGGATACCTGGCACCTGAATACGCTATCCGAGGCCAGGTGACAAAGAAATCCGACATCTATAGCTTCGGTGTTCTTCTACTGGAAATCGTTAGCGGCAGATGCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGGACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGACCTGGGGAATGACCTGGACGTCGACGAGGCATGCCGGTTCCTGAAGATTGGCCTGCTATGCACACAGGACGCAATGGCGCGCCGCCCCAACATGAGCACCGTCGTCAGGATGCTCACCGGGGAGAAGCACTTCTCGGTGCACCGGATCACCAGGCCGGCCATGATCACCGACTTCGCCGACCTCAAGGTCAGCAGCAGCCAGCAGAAGGAGAACGAGACAACACGGTCATCCAACATGAGATCGTTCAGCACCACTGATGAAACGGAGCCTTTCTCATCGTCAGAGACGCCGACGCAGACGTCTATCTGA
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| Protein seq | MDCCFMFRKKQPVEGDDGEHRVKIFSYSELRKATHDFSGANKIGEGGFGSVFRGVLRDGTTVAVKVLSATSRQGVREFLTELTAISDIKHENLVTLIGCCAEGSHRILVYNYLENNSLAQTLLGSRGSNIRFDWRTRVKIAVGVARGIAFLHEEIRPPIIHRDIKASNILLDKDLTPKISDFGLARLLPPNATHVSTRVAGTLGYLAPEYAIRGQVTKKSDIYSFGVLLLEIVSGRCNTNTRLPYEDQFLLERTWVRYEQERLAEIIDADLGNDLDVDEACRFLKIGLLCTQDAMARRPNMSTVVRMLTGEKHFSVHRITRPAMITDFADLKVSSSQQKENETTRSSNMRSFSTTDETEPFSSSETPTQTSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0619400 | RBH | 0.991911 | 1.061697 | 4.449205 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52840 | RBH | 0.644231 | 0.636194 | 1.138796 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026790 | RBH | 0.233242 | 39.041862 | 2.139988 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027570 | RBH | 0.0 | 7.011751 | 0.651105 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027300 | RBH | 1.713489 | 22.066126 | 5.747074 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026990 | RBH | 0.141283 | 0.551456 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027280 | RBH | 3.028863 | 6.088106 | 8.874455 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0495500 | RBH | 10.1228085 | 177.4722825 | 34.1950285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026090 | RBH | 0.424854 | 1.220740 | 0.627638 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0499600 | RBH | 13.065417 | 112.380226 | 9.3257945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026500 | RBH | 0.054791 | 0.485662 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026330 | RBH | 0.277168 | 18.601442 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026380 | RBH | 0.0 | 17.307749 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026840 | RBH | 0.665125 | 3.014545 | 1.347805 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027010 | RBH | 0.140826 | 10.782508 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026240 | RBH | 0.260205 | 2.125844 | 1.516076 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026090 | RBH | 0.000000 | 20.876310 | 1.988204 |
