Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0610100 | OGI:04091420 | 13/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:30920567-30923708 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGTCAAGAGCCAAGAGATGAGTTTCACTATCGATCGGAGTCAGCGTAGCAGCGGGAAATACCACTGCTGGCAGTGCATTTCAGCATCTCTCCAAAAGACCAGGGACAGGGAAACAGCATTAGACGCAGGTTTATATATTACATGGCCAAAATTCTACGCGGCGAGGCAGATCAATCGCTTGTAGACACCACTTCCTCCTCCTCAACCTCATAATCTTCGTCATCGTCGTCGTCATCGTCGTCGTGGTGTCTCGCAGATTGACGCCTTTCAACATGCTGTTTGTCTGATTCGTCCTGCAAAACGTTACAAAACAAGATCGCTGCTTAGTCGCTTCAACGAACAAGCTACAAAAGATGGTTGGAAAGCATGATCAAATGTATGTGCAGCAGCAAGATTAAGTGGGTCAACTCACAAACCCACTTATAGACTAATCAAATGGATTGACCAGCGGGTTACGCACTTATTTGATCTATAAGTGATTTGGCGGGTCAATCCACTTACACCCTTAGCTGGTAAGCATGACCTCTAGTAGATTTTCCTTTGCTTTTGGGAAAAAAAGGGAATTCATCATCTACCTGATGTTTTGACTGGTCCTGTTGAACATCTCCTCCAGCTGCCGAAGACCCAGGGGCATGCTGCAGAGTCACCAGATCAATCTCTTGGGTCTAGTTTGGAAAAGGAATTAAGTGAAACCATTTACTTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGATAGATATAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAGTTTTTATGTGTACCTCATGATCAACACCTAACAATGGCGCACCACGCACACTTTGCTCCAGGGATTTAAACTTCTCCTCCCAGGATTGATTTAAACCTTGCAGAGCATGATTGATCATCTGTTGGACCTCCTCCTGCGAGAACTTCTGCTGACCCCTTTTACCAGGGATGGACTTTGCTATCTCCGCGATTTTGGCCTTGTCGATGGTGCCAGTGAGTCCATAGTACCTCCCACGGTTCCGGCCCCCCACCTGCTGTATCCATGCAGCATCGGGATCTGCAGGTTTATCACCAGCCTCCTCCATTCGCTTCTTGAAACCCTCCTGGAAAATTCAGTGAATTGCAAACACGATTCAGCAGCCATTGGATACACTCATCTAACTAGTTTGCATGTTGCATGATGCTTTCTAAATAATGCATACACCTTTAGAACCTACCACAATCCGTTTCGCTTTCTCACTGACAAATTCTCCTGTGCCACCATTAAACTTATGGGTCTTGTTGAATATCTCAAGTTCTGACACTGGCTTCCCACCATTCTCTATGACCTATGCAATTCAATCAGAACCAGGGTAATGTGTTATAATTCTGAGTTTTTTTAGATGAAAATTAAAATGACTAAACCAATGGAATTTGTCTTTATGTCTTACCATAAGCTGCCGTTGCATGGCAAAGCTCCGAGAACCTGATGTGTGATGAGCACGACCTCCAACAAACCGATTCTTCCTATACTTCAGAGACATCTGCAAGACTTCTTCTTTGGCCCAATATTCACACAATCTCTCCCACCAATTCGGATGCATCCATGCAGGGGGGAAGGGTTTCCACAGTAAAGGGTCCTCGTCCTCATTTACCTTTTCTGTCTGATTGTCCTTTGGCTCTTCTGTAGCATCTTCCTCCTCTGACTCTGCATGACTATTGGAGCTACGAGAACCTGAAGCTTTTTTGGCTTTTTGTACTGCAGCCAATTCTGCTCTAACCCTTCGCTTCTCTTCGCACAGGAGGCCAGTAAACTGTTTTACTGCTCTGCGCTGAAATATCTTCAGGCACTCGGCCTCACGGCCAGGGGCCCACTTGTACCTTTGCTACAGCAAGTGAATATAAGATCAGAAGCCTGTCAAATATATATGACAGTGCACATGTATTAATTTCCTTACAAGAAATTCATTCAAAATAGCAGCCCTCGTCTCTGCAGGATAATGTTTCCAGCGGTAAACCAATTCCTCATTAGCTGGAACATCACCATGCTCACCAACCGGCAAATAGGTTGATCCAGGGTACTTCTGCTTCAAAAGAGCAGTGATGGTAGAGGACACCTTGGGACAAAGTGGGTTGACATCCCAGTTACTGTCAGAGAAAGTTTATTTGTCAAGTACATGGTAAAGAATGCATCAAGAAACACTACCGACAATTTATCAACGCACATATTGCCTTCAAATAAAATGCACATACTCGATATTATTTGGTGTCAAGACAGGCCTGTCATATTCCCTGCGTGGTTCAATCAGTCCTCTAGGACGGCGTCCCCTGCCCCTACCTGATGATTTACGACTATATTTTCTTAATACGGGATGATAGCTATATGCGTCCTGCTGAACAAGTGAATGCGTATCAGCTTATGCATTCAGACTCCCAGTCACACTAAATATATAGAATTCATGCATAAATTAAACCATCAGATCCTCAAACTTGATCCTACAATCTTGCTCTTGGGCAAGTTGCATCTAATGGAAGCTCTGAGCCTCATACCTGTTGCGCATGCGTAACCTGCTCTGGTGACTGTGGCTGCACCTGCTCACCACTTTTATCAAGCTGGTGTGTACCCCTGACCTCTGGAGGGCACAGTTGATTGTAGCGGTGCGGGGATTGCTCGGCTTGAGGCATCTCACGATTTGAAGATGCTGGTAAAACAGATGCATCAGCATTGCCTGACTCACTTGAGCATGCTTGAGGCATTTGGCACTGAGGTGATGGACTGGGACACAAATTGGCAATGAGTCGGTCAATGTCTGGAGGATCAGAATTATATTGGTTTGGAGAAGCAGCTGGCTGCTGGACTGGATCATCATTTATTGGTTGTTCTGGTTGTTTCGTCAAGCGCTTGCTACGCCTAAGATAGAGTCCTTCATTTGGAGAACTCGGAAAGCCCTTATTTTTCCTCTTATTCTCACCAGCATTCTTGCTGCTCCTTTTTCTCTTCGGGCATCCAATCGTCTTACCAGCTTGTGCTTTTTTCAGTTCACTAGCTTGATTGAGGGGCTCTGCTTTTTCCCGCTCCATAGTACTTGAGACATTTTTTGCCCGCTGTTCACGACTTGAAATG
More
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| CDS seq | ATTTCAAGTCGTGAACAGCGGGCAAAAAATGTCTCAAGTACTATGGAGCGGGAAAAAGCAGAGCCCCTCAATCAAGCTAGTGAACTGAAAAAAGCACAAGCTGGTAAGACGATTGGATGCCCGAAGAGAAAAAGGAGCAGCAAGAATGCTGGTGAGAATAAGAGGAAAAATAAGGGCTTTCCGAGTTCTCCAAATGAAGGACTCTATCTTAGGCGTAGCAAGCGCTTGACGAAACAACCAGAACAACCAATAAATGATGATCCAGTCCAGCAGCCAGCTGCTTCTCCAAACCAATATAATTCTGATCCTCCAGACAGCAGTACAAAAAGCCAAAAAAGCTTCAGGTTCTCGTAG |
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| Protein seq | ISSREQRAKNVSSTMEREKAEPLNQASELKKAQAGKTIGCPKRKRSSKNAGENKRKNKGFPSSPNEGLYLRRSKRLTKQPEQPINDDPVQQPAASPNQYNSDPPDSSTKSQKSFRFS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0610100 | Os04t0610100-01 | Chr04 | 30920567 | 30923708 | - | irgsp1_rep | ||
| CDS seq | ATTTCAAGTCGTGAACAGCGGGCAAAAAATGTCTCAAGTACTATGGAGCGGGAAAAAGCAGAGCCCCTCAATCAAGCTAGTGAACTGAAAAAAGCACAAGCTGGTAAGACGATTGGATGCCCGAAGAGAAAAAGGAGCAGCAAGAATGCTGGTGAGAATAAGAGGAAAAATAAGGGCTTTCCGAGTTCTCCAAATGAAGGACTCTATCTTAGGCGTAGCAAGCGCTTGACGAAACAACCAGAACAACCAATAAATGATGATCCAGTCCAGCAGCCAGCTGCTTCTCCAAACCAATATAATTCTGATCCTCCAGACAGCAGTACAAAAAGCCAAAAAAGCTTCAGGTTCTCGTAG
More
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| Protein seq | ISSREQRAKNVSSTMEREKAEPLNQASELKKAQAGKTIGCPKRKRSSKNAGENKRKNKGFPSSPNEGLYLRRSKRLTKQPEQPINDDPVQQPAASPNQYNSDPPDSSTKSQKSFRFS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52060 | RBH | 0.883814 | 0.811830 | 0.543430 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026070 | RBH | 0.781169 | 6.848181 | 3.513747 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026860 | RBH | 0.209843 | 0.326233 | 0.934892 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0026620 | RBH | 1.464485 | 2.188254 | 4.933135 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026300 | RBH | 0.148054 | 0.138390 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0026570 | RBH | 0.819121 | 4.771207 | 6.679847 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0487200 | SBH | 6.5571325 | 20.7408715 | 25.7345295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025340 | RBH | 0.171509 | 0.308011 | 0.634616 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0025820 | RBH | 0.318123 | 0.243943 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0025640 | RBH | 0.431183 | 2.121639 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0025690 | SBH | 3.888289 | 13.927725 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026120 | RBH | 0.421732 | 0.280196 | 0.222780 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026280 | RBH | 0.201133 | 6.614352 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G025540 | RBH | 0.122679 | 0.825518 | 1.041206 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025430 | RBH | 2.247352 | 6.007001 | 5.003170 |
