Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0597800 | OGI:04089410 | 11/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:30161452-30165436 | ||||||||
| Gene Symbol | PTR6, OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 | ||||||||||
| DNA seq | GGGGTTGGTGAGTTGGTCTGTTGGTGGCCGGGGCGCGGGCGCGCTTACCTGTTCTCCCTCGCGTGGAGCTCTTTGACTACGCCCGCCAGCTGCGCGTGTGTATAACCTTGCTTGCTTGCCTCTCACAGCCGAAGTCGCAGGCGCAGTCAGGAGCTATCGGGAAAACGGGATTTCCCCCAGCTTTCCAAGGTTCGCGGGTCAATCTCGCAGTGATACTCCGGCGGCGGCAATGGACGCCGGCGAAATCATCGTGGCCCAGCCATCGCCGCGGCTGTATAAGGTATGTGAAACTTCATGAGCGAGCTCGCCGTCGACCCAAGCTTAGGGAGATATAGGGATTGATATTATCGGTGCAGCAGTGCGTGATTAGTTGTTTAGTTTAGCTTGCTTCTTAATTTGAGGGCTTTCATTTGGAGTTTATAATCTGATTGTTTGGATTGCTTTTGTGCAGAGTTTGACTTTCCGGAGGATCGCGACGAAGGAAAGGACCATTCCCCAGGATGAAGAGATGAAGGTAAGCACCTCTTGATCACGTTTGAACTCGTCCTCTGTTGTTAATTAGTCATTAACTTGCGTAGTTGTAGTCCGTAGTAATAGAAAAACTTGGCGGGCGGGGTGCGATGTGTGATGATCTGCTGCAAGAACTGAGAAATTTTTGCGTCAAAAAGGAACTGAGAAATTTTTGGATAATGGATCACATAACTCGTCTTCTAAACTCTAATAAATGGATGTATACGACCATTTTGTGCATTCGTTTTAGTAAAAAAAGCAGCTACACATTGTTTTCTTGTTTTTGCTAGTACTTTAATATAGTATACATGCTATATTGTTGGTTTATTACGGATTCCATTTTTCAGGTGTCCTATGGTAATAATTTTCGCAAGTGTTTTTTTTTGAATTCATCACTGCAGACAACAAGAAATATGATTTAATGGTCAAATTGATTACCCTGCAAATTGTGTTGTGACAATAAAATGATATTCTCAATTTCAAGAGGCCAGCATGCAATTTCTACTATCATAAAATAGTGAAATTAATTGACCGTATCAAGAACTGTACACAACTGTTAGGTTTTTCAAGTTATTGTACTAGACCGTATCCACCTGCCAGATTTTTGTTCTAAAAGCGTAATTTATTTTATATTAAGCTATTATCAATATCTCGATGCAAATGTGTGTTCTTTTTTATTAAAAGATTCTTTCACTAGGGAAAAACGTCCGGCCAATCAATTTGTCCCAGCATAGTCGCCCTATGGGCTATTTTTATAGGCCTTAGGCAGCCGTACGCCCTGTTGAAAAAAAAAAAGACTCCCAGCTCAAACCCAGCCCAAAACATCTGTTAATTTGGTTTTACATGTAAAATCATTGGGAGCCCGTAGATTCAGAAACAAAGGTCTCAAATTGGATATTTTTCTTAATTTTTATATTATTTCATATTATTTCTAAAAGATTAAAAAATAAATTACAGTTTTAAAGTTTTGCAAAAATTTACTCCTCCCGCCCTACCGTAGAGCGATATATGTGACATGGCAATCCAGGGAGGGGGTGCCGTGGCAATTTTGCATAAATCGCCCTCCCCTAGGACGATTTATTCTTGAGAAGGAGCCATCTATAAAATTGTCATGACGCAAAATTTAGTGATGCATCGGGTGCGTTATGGCAATTTTACAAGGCTCCCACCCGAGGAGAAATCGCCTTCCTGTAAAGTGATTTATCTTTCAAGGGGGCCACCTACAAATTGTCACGGTATACCTCCCACGGGGTGCCATGCCACATAGATTGTCCTATTGTAAGGTGATTTATAAGTCCACTTTTCGATATGTAAAATTTTAAAATGATAATTTATTTTTTAATTTTTTTTAAAAAAATAAACAAATCCTCAAATTGTGCAATCTTTTGAGGCCTTATTTCGTTGCAAACTTTTTCTTCAAACTTCTAACTTTTCTATCACATCAAAACTTTTTTACACACGTAAACTTTCAACTTTTCTATCACATTGTTTTAATTTTAACCAAACTTTCAATTTTAACGTAAACTAGACACATCCTGACTTCGTTCGCAGATTCGCAGCCCGAGGTTCCAGGACGAAAGCCTCACTGCGCCATTTATACTAGACAAGAAAGCGAGGAGCAAAGCGCCAACAGTGGTCCTAGGATTCGAGTGCTTGGAGAGCACAGCATTTAACGGCATTGCCACGAACCTGGTGGTGTACCTGGAGACTCTCCTGCACGGCAGCAATCTCGCGAGCGCGTCCAATGTCACGACGTGGTTCGGGACGAGCTACCTCACCCCGGTGTTCGGCGCCATCATCGCCGACACGTTCTGGGGCAACTACAACACCATCCTCGTCTCCCTCGTCTTCTATCTCCTTGTAAGCATCAATGCATTTTGCAAGATAGTATGTTGAAATCCATATGTCCAATGTGCTTAATTAACTTTGCAATCCATCGTCTGTGTGCAGGGTATGATGCTGGTCACCTTCTCGGCGTTCCTGCCGACCACCGCGCTGTGCACCGTGGTGGGCTCGTCGTGCCAGCAGCCACTTCTTGGCGCGCAGACCATCGCCTTCCTCGGGCTCTACCTCGTGGCGTTCGGAAGCGGCGGTGTGCGCGCGGCGCTGCTGCCGTTCGGCGCGGACCAGTTCGACGATGACAACACGGCCGACCGCGAGCGCAAGATGTCCTTCTTCAGCTGGTTCTACATCTGCGTCGACTTCGGGATGATCGTGTCGGGCCTTTTCATCGTGTGGATCCAGCAGAACGTTAGCTGGGGACTTGGCTTCGGCATCGCCACGGCCTGCATCGCGCTCGCCTTCGGCGGCTTCGTGCTCGCCACGCCCATGTACAAGCGCCGCATGCCCACAGGCACGCCGATCAAGAGCCTCGCGCAGGTCGTGGTTGCCGCGTGCCGGAAGGCAAGACTCCGTGTCCCCGCGGACACTACTCTTCTCTACGAAGTCCATGACAAGATCAACCAGTCGAAGATAGCGCACACCGACCAGTTCGGCTTTCTTGACAAGGCCGCGGTGGTCATGGAGTCCGACTTGGAAGAGGAATCGAACGACGTCGCGGCGGATGCCTCGTGGAGGATCTGCACGGTGACGCAGGTCGAGGAGCTCAAGATCCTGCTGCGGCTATTGCCGATATGGGCGACGAGTATCGTGCTTTCGGCGGCGTACGCGCAGCTGAACACGACGTTCGTGCAGCAGGGCGCCGCGATGAACATGCGGATCATGTCGTTCACCATCCCGCCCGCGTCGATGGTGTCCTTCGAGGTGCTCTGCGTCCTGGCATGGGTTCTCATGTACAGCTCCGTGATCGTGCCCATGCTCAACAGCTTATCCCTGGCCAACGGCGAGCCGTCGCAGCTGCAGCGGATGGGCGCGGGGCGGCTGCTCATGGCGTTCGCGATGGCCGTCGCGGCGCTGGTGGAGATGATGCGGCTGGACGCGGCGGGGCGCGGCGAGTCCCTGAGCATCGCGTGGCAGATGCCGCAGTACTTCGCGCTGGCCGGCGCGGAGGTGTTCTGCTACATCGCGCAGCTGGAGTTCTTCTACAGCGAGGCGCCGGAGTCCATGAAGAGCATGTGCACGTCCCTGGCGCTGCTCACCGTGGCGCTGGGAAGCTACATGAGCTCATTCATCTACGCCGTCGTGAACGCGTTCACCGCCGTGGACGGGCGGCCCGGGTGGATATCGGACAACCTCAACGAAGGACACATGGACTACTTCTTCTGGGTCATGGCGGCGCTGTGCACGCTCAACTTCGTCGTGTACAGCGCGTTCGCCCGGACCTACAGGGTGAAGCTGGTCGTGTCGTGATTGTTCGTTACTCCCTTACCATGATCAGGTTACACGCAATCGTGGTCGTATTGTGTTACAGAAGAATCTTGTACTCCTAGCTAGCAATAGCGACAGCCGACAGTATGTGTAAAGTTCAAGGAAAAAAAACAAGGTTTGATGGGCTGACAGCCCAGCAGCTTCCTTT
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| CDS seq | ATGGACGCCGGCGAAATCATCGTGGCCCAGCCATCGCCGCGGCTGTATAAGAGTTTGACTTTCCGGAGGATCGCGACGAAGGAAAGGACCATTCCCCAGGATGAAGAGATGAAGATTCGCAGCCCGAGGTTCCAGGACGAAAGCCTCACTGCGCCATTTATACTAGACAAGAAAGCGAGGAGCAAAGCGCCAACAGTGGTCCTAGGATTCGAGTGCTTGGAGAGCACAGCATTTAACGGCATTGCCACGAACCTGGTGGTGTACCTGGAGACTCTCCTGCACGGCAGCAATCTCGCGAGCGCGTCCAATGTCACGACGTGGTTCGGGACGAGCTACCTCACCCCGGTGTTCGGCGCCATCATCGCCGACACGTTCTGGGGCAACTACAACACCATCCTCGTCTCCCTCGTCTTCTATCTCCTTGGTATGATGCTGGTCACCTTCTCGGCGTTCCTGCCGACCACCGCGCTGTGCACCGTGGTGGGCTCGTCGTGCCAGCAGCCACTTCTTGGCGCGCAGACCATCGCCTTCCTCGGGCTCTACCTCGTGGCGTTCGGAAGCGGCGGTGTGCGCGCGGCGCTGCTGCCGTTCGGCGCGGACCAGTTCGACGATGACAACACGGCCGACCGCGAGCGCAAGATGTCCTTCTTCAGCTGGTTCTACATCTGCGTCGACTTCGGGATGATCGTGTCGGGCCTTTTCATCGTGTGGATCCAGCAGAACGTTAGCTGGGGACTTGGCTTCGGCATCGCCACGGCCTGCATCGCGCTCGCCTTCGGCGGCTTCGTGCTCGCCACGCCCATGTACAAGCGCCGCATGCCCACAGGCACGCCGATCAAGAGCCTCGCGCAGGTCGTGGTTGCCGCGTGCCGGAAGGCAAGACTCCGTGTCCCCGCGGACACTACTCTTCTCTACGAAGTCCATGACAAGATCAACCAGTCGAAGATAGCGCACACCGACCAGTTCGGCTTTCTTGACAAGGCCGCGGTGGTCATGGAGTCCGACTTGGAAGAGGAATCGAACGACGTCGCGGCGGATGCCTCGTGGAGGATCTGCACGGTGACGCAGGTCGAGGAGCTCAAGATCCTGCTGCGGCTATTGCCGATATGGGCGACGAGTATCGTGCTTTCGGCGGCGTACGCGCAGCTGAACACGACGTTCGTGCAGCAGGGCGCCGCGATGAACATGCGGATCATGTCGTTCACCATCCCGCCCGCGTCGATGGTGTCCTTCGAGGTGCTCTGCGTCCTGGCATGGGTTCTCATGTACAGCTCCGTGATCGTGCCCATGCTCAACAGCTTATCCCTGGCCAACGGCGAGCCGTCGCAGCTGCAGCGGATGGGCGCGGGGCGGCTGCTCATGGCGTTCGCGATGGCCGTCGCGGCGCTGGTGGAGATGATGCGGCTGGACGCGGCGGGGCGCGGCGAGTCCCTGAGCATCGCGTGGCAGATGCCGCAGTACTTCGCGCTGGCCGGCGCGGAGGTGTTCTGCTACATCGCGCAGCTGGAGTTCTTCTACAGCGAGGCGCCGGAGTCCATGAAGAGCATGTGCACGTCCCTGGCGCTGCTCACCGTGGCGCTGGGAAGCTACATGAGCTCATTCATCTACGCCGTCGTGAACGCGTTCACCGCCGTGGACGGGCGGCCCGGGTGGATATCGGACAACCTCAACGAAGGACACATGGACTACTTCTTCTGGGTCATGGCGGCGCTGTGCACGCTCAACTTCGTCGTGTACAGCGCGTTCGCCCGGACCTACAGGGTGAAGCTGGTCGTGTCGTGA
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| Protein seq | MDAGEIIVAQPSPRLYKSLTFRRIATKERTIPQDEEMKIRSPRFQDESLTAPFILDKKARSKAPTVVLGFECLESTAFNGIATNLVVYLETLLHGSNLASASNVTTWFGTSYLTPVFGAIIADTFWGNYNTILVSLVFYLLGMMLVTFSAFLPTTALCTVVGSSCQQPLLGAQTIAFLGLYLVAFGSGGVRAALLPFGADQFDDDNTADRERKMSFFSWFYICVDFGMIVSGLFIVWIQQNVSWGLGFGIATACIALAFGGFVLATPMYKRRMPTGTPIKSLAQVVVAACRKARLRVPADTTLLYEVHDKINQSKIAHTDQFGFLDKAAVVMESDLEEESNDVAADASWRICTVTQVEELKILLRLLPIWATSIVLSAAYAQLNTTFVQQGAAMNMRIMSFTIPPASMVSFEVLCVLAWVLMYSSVIVPMLNSLSLANGEPSQLQRMGAGRLLMAFAMAVAALVEMMRLDAAGRGESLSIAWQMPQYFALAGAEVFCYIAQLEFFYSEAPESMKSMCTSLALLTVALGSYMSSFIYAVVNAFTAVDGRPGWISDNLNEGHMDYFFWVMAALCTLNFVVYSAFARTYRVKLVVS |
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| Function | Protein NRT1/ PTR FAMILY 8.3 [UniProtKB/Swiss-Prot:P46032] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0597800 | Os04t0597800-01 | Chr04 | 30161452 | 30165436 | + | irgsp1_rep | ||
| CDS seq | ATGGACGCCGGCGAAATCATCGTGGCCCAGCCATCGCCGCGGCTGTATAAGAGTTTGACTTTCCGGAGGATCGCGACGAAGGAAAGGACCATTCCCCAGGATGAAGAGATGAAGATTCGCAGCCCGAGGTTCCAGGACGAAAGCCTCACTGCGCCATTTATACTAGACAAGAAAGCGAGGAGCAAAGCGCCAACAGTGGTCCTAGGATTCGAGTGCTTGGAGAGCACAGCATTTAACGGCATTGCCACGAACCTGGTGGTGTACCTGGAGACTCTCCTGCACGGCAGCAATCTCGCGAGCGCGTCCAATGTCACGACGTGGTTCGGGACGAGCTACCTCACCCCGGTGTTCGGCGCCATCATCGCCGACACGTTCTGGGGCAACTACAACACCATCCTCGTCTCCCTCGTCTTCTATCTCCTTGGTATGATGCTGGTCACCTTCTCGGCGTTCCTGCCGACCACCGCGCTGTGCACCGTGGTGGGCTCGTCGTGCCAGCAGCCACTTCTTGGCGCGCAGACCATCGCCTTCCTCGGGCTCTACCTCGTGGCGTTCGGAAGCGGCGGTGTGCGCGCGGCGCTGCTGCCGTTCGGCGCGGACCAGTTCGACGATGACAACACGGCCGACCGCGAGCGCAAGATGTCCTTCTTCAGCTGGTTCTACATCTGCGTCGACTTCGGGATGATCGTGTCGGGCCTTTTCATCGTGTGGATCCAGCAGAACGTTAGCTGGGGACTTGGCTTCGGCATCGCCACGGCCTGCATCGCGCTCGCCTTCGGCGGCTTCGTGCTCGCCACGCCCATGTACAAGCGCCGCATGCCCACAGGCACGCCGATCAAGAGCCTCGCGCAGGTCGTGGTTGCCGCGTGCCGGAAGGCAAGACTCCGTGTCCCCGCGGACACTACTCTTCTCTACGAAGTCCATGACAAGATCAACCAGTCGAAGATAGCGCACACCGACCAGTTCGGCTTTCTTGACAAGGCCGCGGTGGTCATGGAGTCCGACTTGGAAGAGGAATCGAACGACGTCGCGGCGGATGCCTCGTGGAGGATCTGCACGGTGACGCAGGTCGAGGAGCTCAAGATCCTGCTGCGGCTATTGCCGATATGGGCGACGAGTATCGTGCTTTCGGCGGCGTACGCGCAGCTGAACACGACGTTCGTGCAGCAGGGCGCCGCGATGAACATGCGGATCATGTCGTTCACCATCCCGCCCGCGTCGATGGTGTCCTTCGAGGTGCTCTGCGTCCTGGCATGGGTTCTCATGTACAGCTCCGTGATCGTGCCCATGCTCAACAGCTTATCCCTGGCCAACGGCGAGCCGTCGCAGCTGCAGCGGATGGGCGCGGGGCGGCTGCTCATGGCGTTCGCGATGGCCGTCGCGGCGCTGGTGGAGATGATGCGGCTGGACGCGGCGGGGCGCGGCGAGTCCCTGAGCATCGCGTGGCAGATGCCGCAGTACTTCGCGCTGGCCGGCGCGGAGGTGTTCTGCTACATCGCGCAGCTGGAGTTCTTCTACAGCGAGGCGCCGGAGTCCATGAAGAGCATGTGCACGTCCCTGGCGCTGCTCACCGTGGCGCTGGGAAGCTACATGAGCTCATTCATCTACGCCGTCGTGAACGCGTTCACCGCCGTGGACGGGCGGCCCGGGTGGATATCGGACAACCTCAACGAAGGACACATGGACTACTTCTTCTGGGTCATGGCGGCGCTGTGCACGCTCAACTTCGTCGTGTACAGCGCGTTCGCCCGGACCTACAGGGTGAAGCTGGTCGTGTCGTGA
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| Protein seq | MDAGEIIVAQPSPRLYKSLTFRRIATKERTIPQDEEMKIRSPRFQDESLTAPFILDKKARSKAPTVVLGFECLESTAFNGIATNLVVYLETLLHGSNLASASNVTTWFGTSYLTPVFGAIIADTFWGNYNTILVSLVFYLLGMMLVTFSAFLPTTALCTVVGSSCQQPLLGAQTIAFLGLYLVAFGSGGVRAALLPFGADQFDDDNTADRERKMSFFSWFYICVDFGMIVSGLFIVWIQQNVSWGLGFGIATACIALAFGGFVLATPMYKRRMPTGTPIKSLAQVVVAACRKARLRVPADTTLLYEVHDKINQSKIAHTDQFGFLDKAAVVMESDLEEESNDVAADASWRICTVTQVEELKILLRLLPIWATSIVLSAAYAQLNTTFVQQGAAMNMRIMSFTIPPASMVSFEVLCVLAWVLMYSSVIVPMLNSLSLANGEPSQLQRMGAGRLLMAFAMAVAALVEMMRLDAAGRGESLSIAWQMPQYFALAGAEVFCYIAQLEFFYSEAPESMKSMCTSLALLTVALGSYMSSFIYAVVNAFTAVDGRPGWISDNLNEGHMDYFFWVMAALCTLNFVVYSAFARTYRVKLVVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0597800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g50950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0699000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0025170 | SBH | 0.0 | 17.110708 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025950 | SBH | 0.000000 | 1.362451 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025670 | SBH | 0.0 | 7.350388 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025400 | SBH | 0.0 | 0.368318 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025650 | RBH | 0.0 | 7.312011 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0476300 | RBH | 0.081145 | 36.26074 | 0.070428 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024400 | RBH | 0.0 | 1.401819 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0480000 | RBH | 0.0391595 | 57.3248765 | 0.138301 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024860 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024700 | RBH | 0.0 | 7.197593 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024790 | RBH | 0.0 | 11.790707 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0025220 | RBH | 0.0 | 0.749933 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0025390 | RBH | 0.0 | 12.615581 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024620 | SBH | 0.0 | 4.740535 | 0.066964 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024510 | SBH | 0.0 | 3.526868 | 0.000000 |
