Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0597501 | OGI:04089370 | 12/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:30146665-30148289 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | ATGGCGCTCTCTGCTTCTCTGACGGACACAATCCGAACACAGGGCATGGTCACCATCACCGCGTCGGCCACGCTGCCGTCTCTGAGACCGCCGTCGTGCGGGCAGAGCGCCTACTGCGTCCCGGCGACGCTCAGCCAGAAGCTGGTCTTCTTCACGGGCATATACCTCTGCGCCCTCGGGATCGGCGGCGCGAAGGCCGTGCTGATCGCGTTCGGGCCGGAGCAGCTCGACGACGACGACGGCGGCGGCAAGAACGAGCGGGTGCGGGAGAGGAAGGCGTCCTACTTCAGCTGGTACTACGCGGTGGCCAACGTGGGCATGCTCACGGCGGGGACGATGCTGGTTTGGTTCGAGGACAACGTGAGCTGGGGGTTCGGGTACGGCCTGTGCGCGTCGTTCGTCGCGGTCGCGGTCGTCGTCCTCGCCGCGACAGCGCCCATGTACCGGATCCTGCCCCCGGCGGGCAGCCCGTTGAAGAGTGTGATCCAAGTGCTTGTGGCGTTCTCTCACAAGGCTAAATTGACTTTGCCGGACGATCCAACTGAACTGTACGAGGACGACGGCGTCAAGAACTCGTTGCAGCATCCGGTGCACGAACGATTAGAGCACACCAACCAATTCAGGTAGTAATCTAATATATTCTCATGGAGCTAGGTGAACAACCATGGTCTCAGAGACTCGTCCCTTTGCGATGCACTAGGTGTTTGGACAAGGCTGCCATTGTCAGCGACGAGGATCTGGAAGACGGCGACAGGTGGAGGCTGTGCACGGTGTCCCAGGTGGAGGAGGTCAAGATTCTGCTGCGGTTGATCCCGATATGGCTCACGTCGGCGGTCTACTTCATCGCGAACACGCAGGCTCAGACCACGTTCGTGCAGCAGGGCACCAAGACGGACGGCCGGATCGCGCGCGGCGCATTCTCCGTCCCGGCCGCGTCGCTGTCGTCCTTCCAGATGGCGTTCGTCGCCGTCTTCGTCACGCTCTACAACAGGGCCGTGATGCCCGCGGCGCGCCGGTGCCTCGGCCGCGCCGTGGCGTTCACGCCGCTGCAGCTCATGGGGTTCGGCCACGCGACGGCGGTCGTCGCGGTGGGCGTGGCCGCGTGCACCGAGGCGCGCCGGCTGCACGCGGCCAGGGCCGGGGCGCCCGCCATGGGCATCGCGTGGCTGCTGCCGCAGTACCTCGTGATGGCCGCCTCCGACGCGTCGCTCACCGTCGGGCAGCTGGAGTTCTTCTACGACCAGTCGCCGGAGACGATGCGGAGCGCGTCGACGGCGTTCTACTTCCTCGCCATATCGCTCGGGAACCTGCTCAACTCTCAGCTGGTGACTCTGGTGGCGAAGGTGACCGCGGTATGGGGCAATGCAGGGTGGTTTCCACTGGACTTGGATGACGGTCACCTGGATTACTTCTTCCTGCTCATCGTGGCCATCACCGCGGTGAACTTCGCAGTTTACGTCGCCCTCGCCAAGAACTACACGCCAAAGAAGGTTAGGTAGGGATTATACTTGACATTCGCTTGTGTCAGAACAACAGAAAAATGCTTTGACGACGGGATGCAGAACATGCGCCGGCGAAGGGGCTCGACGGCCGTCGTCGTCCGCCACTCCGCGTCGAGCACCTGA
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| CDS seq | ATGGCGCTCTCTGCTTCTCTGACGGACACAATCCGAACACAGGGCATGGTCACCATCACCGCGTCGGCCACGCTGCCGTCTCTGAGACCGCCGTCGTGCGGGCAGAGCGCCTACTGCGTCCCGGCGACGCTCAGCCAGAAGCTGGTCTTCTTCACGGGCATATACCTCTGCGCCCTCGGGATCGGCGGCGCGAAGGCCGTGCTGATCGCGTTCGGGCCGGAGCAGCTCGACGACGACGACGGCGGCGGCAAGAACGAGCGGGTGCGGGAGAGGAAGGCGTCCTACTTCAGCTGGTACTACGCGGTGGCCAACGTGGGCATGCTCACGGCGGGGACGATGCTGGTTTGGTTCGAGGACAACGTGAGCTGGGGGTTCGGGTACGGCCTGTGCGCGTCGTTCGTCGCGGTCGCGGTCGTCGTCCTCGCCGCGACAGCGCCCATGTACCGGATCCTGCCCCCGGCGGGCAGCCCGTTGAAGAGTGTGATCCAAGTGCTTGTGGCGTTCTCTCACAAGGCTAAATTGACTTTGCCGGACGATCCAACTGAACTGTACGAGGACGACGGCGTCAAGAACTCGTTGCAGCATCCGGTGCACGAACGATTAGAGCACACCAACCAATTCAGGTGTTTGGACAAGGCTGCCATTGTCAGCGACGAGGATCTGGAAGACGGCGACAGGTGGAGGCTGTGCACGGTGTCCCAGGTGGAGGAGGTCAAGATTCTGCTGCGGTTGATCCCGATATGGCTCACGTCGGCGGTCTACTTCATCGCGAACACGCAGGCTCAGACCACGTTCGTGCAGCAGGGCACCAAGACGGACGGCCGGATCGCGCGCGGCGCATTCTCCGTCCCGGCCGCGTCGCTGTCGTCCTTCCAGATGGCGTTCGTCGCCGTCTTCGTCACGCTCTACAACAGGGCCGTGATGCCCGCGGCGCGCCGGTGCCTCGGCCGCGCCGTGGCGTTCACGCCGCTGCAGCTCATGGGGTTCGGCCACGCGACGGCGGTCGTCGCGGTGGGCGTGGCCGCGTGCACCGAGGCGCGCCGGCTGCACGCGGCCAGGGCCGGGGCGCCCGCCATGGGCATCGCGTGGCTGCTGCCGCAGTACCTCGTGATGGCCGCCTCCGACGCGTCGCTCACCGTCGGGCAGCTGGAGTTCTTCTACGACCAGTCGCCGGAGACGATGCGGAGCGCGTCGACGGCGTTCTACTTCCTCGCCATATCGCTCGGGAACCTGCTCAACTCTCAGCTGGTGACTCTGGTGGCGAAGGTGACCGCGGTATGGGGCAATGCAGGGTGGTTTCCACTGGACTTGGATGACGGTCACCTGGATTACTTCTTCCTGCTCATCGTGGCCATCACCGCGGTGAACTTCGCAGTTTACGTCGCCCTCGCCAAGAACTACACGCCAAAGAAGAACATGCGCCGGCGAAGGGGCTCGACGGCCGTCGTCGTCCGCCACTCCGCGTCGAGCACCTGA
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| Protein seq | MALSASLTDTIRTQGMVTITASATLPSLRPPSCGQSAYCVPATLSQKLVFFTGIYLCALGIGGAKAVLIAFGPEQLDDDDGGGKNERVRERKASYFSWYYAVANVGMLTAGTMLVWFEDNVSWGFGYGLCASFVAVAVVVLAATAPMYRILPPAGSPLKSVIQVLVAFSHKAKLTLPDDPTELYEDDGVKNSLQHPVHERLEHTNQFRCLDKAAIVSDEDLEDGDRWRLCTVSQVEEVKILLRLIPIWLTSAVYFIANTQAQTTFVQQGTKTDGRIARGAFSVPAASLSSFQMAFVAVFVTLYNRAVMPAARRCLGRAVAFTPLQLMGFGHATAVVAVGVAACTEARRLHAARAGAPAMGIAWLLPQYLVMAASDASLTVGQLEFFYDQSPETMRSASTAFYFLAISLGNLLNSQLVTLVAKVTAVWGNAGWFPLDLDDGHLDYFFLLIVAITAVNFAVYVALAKNYTPKKNMRRRRGSTAVVVRHSASST |
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| Function | Protein NRT1/ PTR FAMILY 8.3 [UniProtKB/Swiss-Prot:P46032] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0597501 | Os04t0597501-00 | Chr04 | 30146665 | 30148289 | + | irgsp1_rep | ||
| CDS seq | ATGGCGCTCTCTGCTTCTCTGACGGACACAATCCGAACACAGGGCATGGTCACCATCACCGCGTCGGCCACGCTGCCGTCTCTGAGACCGCCGTCGTGCGGGCAGAGCGCCTACTGCGTCCCGGCGACGCTCAGCCAGAAGCTGGTCTTCTTCACGGGCATATACCTCTGCGCCCTCGGGATCGGCGGCGCGAAGGCCGTGCTGATCGCGTTCGGGCCGGAGCAGCTCGACGACGACGACGGCGGCGGCAAGAACGAGCGGGTGCGGGAGAGGAAGGCGTCCTACTTCAGCTGGTACTACGCGGTGGCCAACGTGGGCATGCTCACGGCGGGGACGATGCTGGTTTGGTTCGAGGACAACGTGAGCTGGGGGTTCGGGTACGGCCTGTGCGCGTCGTTCGTCGCGGTCGCGGTCGTCGTCCTCGCCGCGACAGCGCCCATGTACCGGATCCTGCCCCCGGCGGGCAGCCCGTTGAAGAGTGTGATCCAAGTGCTTGTGGCGTTCTCTCACAAGGCTAAATTGACTTTGCCGGACGATCCAACTGAACTGTACGAGGACGACGGCGTCAAGAACTCGTTGCAGCATCCGGTGCACGAACGATTAGAGCACACCAACCAATTCAGGTGTTTGGACAAGGCTGCCATTGTCAGCGACGAGGATCTGGAAGACGGCGACAGGTGGAGGCTGTGCACGGTGTCCCAGGTGGAGGAGGTCAAGATTCTGCTGCGGTTGATCCCGATATGGCTCACGTCGGCGGTCTACTTCATCGCGAACACGCAGGCTCAGACCACGTTCGTGCAGCAGGGCACCAAGACGGACGGCCGGATCGCGCGCGGCGCATTCTCCGTCCCGGCCGCGTCGCTGTCGTCCTTCCAGATGGCGTTCGTCGCCGTCTTCGTCACGCTCTACAACAGGGCCGTGATGCCCGCGGCGCGCCGGTGCCTCGGCCGCGCCGTGGCGTTCACGCCGCTGCAGCTCATGGGGTTCGGCCACGCGACGGCGGTCGTCGCGGTGGGCGTGGCCGCGTGCACCGAGGCGCGCCGGCTGCACGCGGCCAGGGCCGGGGCGCCCGCCATGGGCATCGCGTGGCTGCTGCCGCAGTACCTCGTGATGGCCGCCTCCGACGCGTCGCTCACCGTCGGGCAGCTGGAGTTCTTCTACGACCAGTCGCCGGAGACGATGCGGAGCGCGTCGACGGCGTTCTACTTCCTCGCCATATCGCTCGGGAACCTGCTCAACTCTCAGCTGGTGACTCTGGTGGCGAAGGTGACCGCGGTATGGGGCAATGCAGGGTGGTTTCCACTGGACTTGGATGACGGTCACCTGGATTACTTCTTCCTGCTCATCGTGGCCATCACCGCGGTGAACTTCGCAGTTTACGTCGCCCTCGCCAAGAACTACACGCCAAAGAAGAACATGCGCCGGCGAAGGGGCTCGACGGCCGTCGTCGTCCGCCACTCCGCGTCGAGCACCTGA
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| Protein seq | MALSASLTDTIRTQGMVTITASATLPSLRPPSCGQSAYCVPATLSQKLVFFTGIYLCALGIGGAKAVLIAFGPEQLDDDDGGGKNERVRERKASYFSWYYAVANVGMLTAGTMLVWFEDNVSWGFGYGLCASFVAVAVVVLAATAPMYRILPPAGSPLKSVIQVLVAFSHKAKLTLPDDPTELYEDDGVKNSLQHPVHERLEHTNQFRCLDKAAIVSDEDLEDGDRWRLCTVSQVEEVKILLRLIPIWLTSAVYFIANTQAQTTFVQQGTKTDGRIARGAFSVPAASLSSFQMAFVAVFVTLYNRAVMPAARRCLGRAVAFTPLQLMGFGHATAVVAVGVAACTEARRLHAARAGAPAMGIAWLLPQYLVMAASDASLTVGQLEFFYDQSPETMRSASTAFYFLAISLGNLLNSQLVTLVAKVTAVWGNAGWFPLDLDDGHLDYFFLLIVAITAVNFAVYVALAKNYTPKKNMRRRRGSTAVVVRHSASST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0597501 | RBH | 0.165409 | 0.169631 | 0.808559 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g50930 | RBH | 0.203395 | 0.150425 | 0.150080 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0699000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0025160 | RBH | 0.000000 | 1.281942 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025940 | RBH | 0.086880 | 0.0 | 0.308103 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025660 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025390 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025640 | SBH | 0.479409 | 1.568140 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0476300 | SBH | 0.081145 | 36.26074 | 0.070428 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024390 | RBH | 0.000000 | 0.084934 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0479800 | RBH | 1.6484185 | 1.970131 | 0.056156 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024850 | SBH | 0.0 | 0.105780 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024690 | RBH | 0.048293 | 0.799855 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024780 | SBH | 0.0 | 1.666229 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0025210 | SBH | 0.204247 | 0.0 | 0.121900 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0025380 | SBH | 0.056205 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024620 | SBH | 0.0 | 4.740535 | 0.066964 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024510 | RBH | 0.0 | 3.526868 | 0.000000 |
