Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0584500 | OGI:04087660 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:29522376-29527451 | ||||||||
| Gene Symbol | PUB77, OsPUB77, OsEnS-73 | ||||||||||
| DNA seq | ACGGCCCGTCACCATGCAAACCACAACGAACAGTGATGTGCCACTAGCAGCAGAGACCTGTCATCCACACGCCCCCGCCGGCGACAATGGCGCCGCCGCCGTCGTCATTGCTTCGCGACCTCCTCGCCGCTGATGGCTTCAGAAACCGTCGCAAGCCGCCTGACAGTAACCCTCCGGCCGCCCCAAGGACCACGAGCATGCCCCTCCAGCACCGGCGGCCGAGTAGGCCAGCACGGTCGCAGTCCGACGTCCTCACCCGCAGCCGCCTCAGAGAAACAAACAACGTCGGTACTAGCGATGGCGACGGAGTCGACGCCGGCGAGGAGCAGCGGACCGCCACACGGAGGTCATCGGCGTCGCTGATGAGCGCGAGGAGCTACAACAACAACAAGGACAGCGGCGGCGGCGCCATGAGGGGCGGCTCAGCTGCCGCGGTACCGGCTCTCGACGAGTCCGTGCTCACCGCGTTGATCTCCCTGGTCGCGGGAGCCGTGAAGCGGTTCGTCAGGGACGAGGGCTTCCGCGCGTCGCTCCGCGGCGGGTGCATGTCGTGCCTCGGCGGCGAGTCCAACCACCGGGCGGTCCTGGACCTCCGCGTGATCGTGCACACCGTCGAGAGGGCCGCGAGCGAGGGGCTCGACGACCCGCGCGACCTGAAGCGCGCGTCGCTCAGGCTGCACGCCATGGCGTCCCTCGACGCGAAGGAAGCGGACGCGGTGAGCGCGGCCGGCGTGCCCTACCAGCGCCTCGCCGCGTGCGCGCACCTGTACATGTCCGTCATCTCCAAGCTCCAGGAGAAGGACCACTCCTCCGCGGTGCACGTGCTGGAGGCCTTCTGCTTGGCGCCGCACGAGGCCCGCACATCCCTGCTTCCCGCGCTCTGGGACAGGCTCTTCCGCTCGGGCCTCTCGCACCTCAAAGCGTGGCGTGACCGCGAGTCGGCGACCGCGGCGAGCTCGGATACGAGGGTGAAGGACGTGGAGAAGATGTTCGTAGAGGCAGTGGACGATGGCACACGCGCGCTCGCATGCTACTACAGAGATTGGCTTCTGGGGCGCAGCCAAGCCATGTCTCTCCCGGTTGTTCCTGCTCCTCCCAGCACCGTTCTTGCCAGCGCGCTGAGGTTCTCGACGTCGACGTCCTATGACATTGGCTCGGATGTCGCTTGTAGCTCCGGGAGTTACAGTCCAGCTGTAAAGTTTGCGCTCGACGAGACTCCATCACAATATGATCGAGAGATCGAAGAGGAAGAAGAAGCAGAGGTGGACGAGAAGACAGCAGATGCAGAAAGCGTGTTCCATGAGTGCGATGGCACTGAACCGAAGAGCTACACTCACTCACTTCAGACAGAAGAAAACGAGCTAATGCCTGACAAGCTAGCCAACGAGGCATCTGAACGAAAGGTCAGCATTTTTTTTTTCTGTGGAATTAACTTTTCTTGCATGCGCAATTGATCATGCGCGGGAAAAAGATCAAAATTCTGATGGTTTACGCCTCAAAATCTTAGAGTGAAGATGAACGGAGCAGACAACCAGATGAGTCAACGAGTTATGTGCCAATTTCTGATATCACGGCTATTGACCTTCCTACACTCGAGTTCTGGTGCGAACCTCTCTCTGCATTTTCCAATCTTTTCATGCATGTCATACTGATCTTTGCATAATTTCGTGTAAGCTTCTCAGTGAAGGGCCTGATCTCCAGAGTGACACAGATGGCAGTCAAATATCCATTTTTGCCACCATTCCTAGTGATTTCCTCTGTCCACTGACGAGGCAGATCTTCAACCGTCCGGTGACAATCGAGACAGGTCAGACGTTCGAGCGGCATGCTATAGTTCAGTGGTTCGATAAAGGCATCAGAATGTGCCCAATTACAGGTCAAGAACTTGAAAGCCTGTCGATTCCAGACATAAACCGTGTGTTAAAACGCTTGATCGATAACTGGAAGTCCGAACACTGCAAAACTCTGAACTCTGAAAGTACATGTCCTGAAAAGGAGTTAACTGCAACATTCGTAGAGAATGTCCTTTCTTCTGAATGCGAGACGTCTGAAAAACTTGAGAAGGCAAGGCGTCTTATGGCAATCGGTGGCATAGACTTTCTTCTGCATAAATTTCATGGAGGAGGAGAAGATGAGAAGGCACAAGCAGCTGAGCTCCTTTTGCTCTGCATCAGGGCAGAAGGAAGCTGCAGAAACTACATGGCCATAAGGATTTGTAACTCAAGTGTTGTTCAGCTTCTCCACAGTGAGGTGATTTCAGCAAGGAGTTCTGCAGTTCGTCTGCTTGTTGAACTGCTCTGCCTGAAAAGGTTCTGTCTCCTGTTCGTAACACCAAATGCATCCAAATATGTCTTGTATGTACATGCGCTTCCATCTCACAAAATATTTCAATTGTCACAGAAGGGAAATAGTTGAATTGTTCCTACGTGGATTGCGCACAGAGTTGACAATGGAGACTATGAATCTACTACTCGAGCATCTCCGACGCTCGCCAAACGAAGAACAAGCTCTGGGTGCTGTTCTACTCCTGCATTTTGATCATGCATTGGTATGCTGCTTTAGTCCATCTTCTGTTGCTCCTAATTGCATTTGAAGTGCTACTAACATAGGATAGAATACCAAAAACTAAAAACTTTTAGCGGAATTAAAAATTACCTTCAAACCTTATGGAGATCGGTCTGATCGGCATGTATGCACCTGTCTGATTGTGCTTGTTCCACCAGTTTGACTGGTGTAGAAGATTCGGCCTGATCGCTCACCGAGTCACCGTCATCGGTCTAACCGTTGTGTACTCTTCGGTGTAACCGTTGAACCTAAGCAAAAACACAAATCGAAAACATCTTAAAAGTAGATCAACTTTATTACTTCTAATTATGTTTATAAAGTGCAATAATAATATTTTTCTCTAAAAATTTGACTACTATTTAGGTTAAACCCAAATTTTCTCTCAGCTAAACTCTCACGAAAATCGAAACTGATAGGTCTCAACCCCTCTTCTATTCATACCCTTAGGTGGTTGCACAGAAACCATGAATCCAACTTGTACAAATGTCTTAATCCACTAAGAATCCTTCCCGTACAAGTATCCAACTTATCTCATTAAAATTCAAACTCCAATCTTCCCAAATTTGAACACCCCACAAATCTGACTCCGCTTTCCATACACACAATCCCTCTCGTATGCTTTATGGAATCTTCATTAACCACGTACATTGTTTTTTAGCTTAAGCGTCCGCATGATCTCCCAATTGTCTAGACATCAACTTCTCCCAAGTTAACTCTAGACCCATCGCCGGCAACACTCTCCCAAGGCATTAGGACACACATACACATGAATCAAACAAGAAACAATATCTGAGCACTATTTTTTTCCCCAATTTGACTTCACAGTAGCACACAATAGTATTACACATATATAAAAATCATCTAGAAGTTATAAACATGATAAAATCACAAGTATTCGAAGAAACAGCCGAAACCGATTCCGAGCAGGAGCCAGCCGGTCGGATCATTGGGGCGGCCGATCTGACCACACACTACACGCTGGTCTGACCGGCCTACTCCACCCAGTCTGACCAGTCCCACACAGTCAGTACAACTTCACCAATAAACCACCAATTATCTCACAAAGTCAATTATTTATCATAATAAAATAATAATCAAAACACTCTGATTTCACACTAACCACCTAAATTTCTTGCCTACTTTCTCTGCGTGATCTATGATATTGCTAAATTCCTACCCTCGGAGGAAAAATGTCTCTGAATAAATAACCAAGACTGTTACACAATTCAACTATGACAAAGCAATATACTGAACCTGTAGTCTGTAAATAATCTGGCAGGTGGAGCCACACAGAGATAGCGTATACAGAGAAGAGGCTGCCAAGATCATCACACATTCTCTGAGATGCTCCCTGTCTGAAGAAAATGTCGTTGCCAACATCAGGAAAGCACTGCTGCTGCTGGGAGGGCATTTCTCCTTCTCGGGCGACCTCCTTGCAGAGGACCGGATGCTGAAACAAGCCGGCTTCGTCGACGGCTCACGTGTCACGCGTGCCGATTCTGACGCTGCCGTACAGGTAATGTATCGCACAGATACAAACAATAATATATCCAACTAAAAATTTTCCAAGTTGCTCAGAGAAATTCCTCTGCGTCGATCAGGACAAGGGAAGAGACGAAGACGAGGTGTGGCTGAGGGATGTGACCGCGGCGCTACTCGGCAGCGGGAGGAGGCCGTTCCTGGAGGCGCTGTCCATGTGCATGAGCTCTCCCAACCACGACCTGGCGGCCGTGTGCCTGACGACGGCTGCGTGGCTGAGCCGGTCGCTCGCGTCGATCGACGCCGCCGACGTGCAGCTCGCCGCGTTCTCGGCCCTCATCCCGCGGCTGAAGCAGCGCCTCGCCGGCGACCGGTCGCAGGCTCAGCATCGGGTCCTCGCGTCCGTGACACTGTACAACTTCAGCAAGATCCCAGGTAATGATGCGAAAAAACTTAGCCGCACCGGGACGGCATGGAGTATAATCCGTCTGCGACGCGAGAGAAGTCAATGCCTGCATTGATTATGAACACGAGAAATCCAGTTAGGCGGCTAATGATGGATTTGGATTGCGCGCAGACTGCAGGGCCTTGCTGATGCTGCTGGCTGACGGCCTTCGCGATCACCTGGTCGAGCTCGCGGAGCTGACATGGACGGCCGGTCAACTGATCACCGAGCTCCAAGAGTGACGTTAACCTCCGCCACGACGCCCAGCGTACGCTACATGCAAGTCGCCGGAGCGCCTCTCGTGTTCGTGGAAGATTCAGCGGATGGAGCCCGCTGATTTTCTTGCCCCCTTCAGAGTTCAGAATCGTCTCAGCTCCAAACAGTTATCGGACAGAGACGGCACGCTATGTAAATGTTGATGCGTACGGTAGATTATACTATACCTTGTTTAGTCGTTTTCTCTCTTCTTGGGTAACATATTCGACGAGCCGGCCGCTGTGAATATAATTTGATTATGCCTGACGGAGTCCTTGACGTTTGTACTTCTGAATATTTTTGGGGGGCAAAATCCAGTCTTTCAATTGGTT
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| CDS seq | ATGGCGCCGCCGCCGTCGTCATTGCTTCGCGACCTCCTCGCCGCTGATGGCTTCAGAAACCGTCGCAAGCCGCCTGACAGTAACCCTCCGGCCGCCCCAAGGACCACGAGCATGCCCCTCCAGCACCGGCGGCCGAGTAGGCCAGCACGGTCGCAGTCCGACGTCCTCACCCGCAGCCGCCTCAGAGAAACAAACAACGTCGGTACTAGCGATGGCGACGGAGTCGACGCCGGCGAGGAGCAGCGGACCGCCACACGGAGGTCATCGGCGTCGCTGATGAGCGCGAGGAGCTACAACAACAACAAGGACAGCGGCGGCGGCGCCATGAGGGGCGGCTCAGCTGCCGCGGTACCGGCTCTCGACGAGTCCGTGCTCACCGCGTTGATCTCCCTGGTCGCGGGAGCCGTGAAGCGGTTCGTCAGGGACGAGGGCTTCCGCGCGTCGCTCCGCGGCGGGTGCATGTCGTGCCTCGGCGGCGAGTCCAACCACCGGGCGGTCCTGGACCTCCGCGTGATCGTGCACACCGTCGAGAGGGCCGCGAGCGAGGGGCTCGACGACCCGCGCGACCTGAAGCGCGCGTCGCTCAGGCTGCACGCCATGGCGTCCCTCGACGCGAAGGAAGCGGACGCGGTGAGCGCGGCCGGCGTGCCCTACCAGCGCCTCGCCGCGTGCGCGCACCTGTACATGTCCGTCATCTCCAAGCTCCAGGAGAAGGACCACTCCTCCGCGGTGCACGTGCTGGAGGCCTTCTGCTTGGCGCCGCACGAGGCCCGCACATCCCTGCTTCCCGCGCTCTGGGACAGGCTCTTCCGCTCGGGCCTCTCGCACCTCAAAGCGTGGCGTGACCGCGAGTCGGCGACCGCGGCGAGCTCGGATACGAGGGTGAAGGACGTGGAGAAGATGTTCGTAGAGGCAGTGGACGATGGCACACGCGCGCTCGCATGCTACTACAGAGATTGGCTTCTGGGGCGCAGCCAAGCCATGTCTCTCCCGGTTGTTCCTGCTCCTCCCAGCACCGTTCTTGCCAGCGCGCTGAGGTTCTCGACGTCGACGTCCTATGACATTGGCTCGGATGTCGCTTGTAGCTCCGGGAGTTACAGTCCAGCTGTAAAGTTTGCGCTCGACGAGACTCCATCACAATATGATCGAGAGATCGAAGAGGAAGAAGAAGCAGAGGTGGACGAGAAGACAGCAGATGCAGAAAGCGTGTTCCATGAGTGCGATGGCACTGAACCGAAGAGCTACACTCACTCACTTCAGACAGAAGAAAACGAGCTAATGCCTGACAAGCTAGCCAACGAGGCATCTGAACGAAAGAGTGAAGATGAACGGAGCAGACAACCAGATGAGTCAACGAGTTATGTGCCAATTTCTGATATCACGGCTATTGACCTTCCTACACTCGAGTTCTGTGAAGGGCCTGATCTCCAGAGTGACACAGATGGCAGTCAAATATCCATTTTTGCCACCATTCCTAGTGATTTCCTCTGTCCACTGACGAGGCAGATCTTCAACCGTCCGGTGACAATCGAGACAGGTCAGACGTTCGAGCGGCATGCTATAGTTCAGTGGTTCGATAAAGGCATCAGAATGTGCCCAATTACAGGTCAAGAACTTGAAAGCCTGTCGATTCCAGACATAAACCGTGTGTTAAAACGCTTGATCGATAACTGGAAGTCCGAACACTGCAAAACTCTGAACTCTGAAAGTACATGTCCTGAAAAGGAGTTAACTGCAACATTCGTAGAGAATGTCCTTTCTTCTGAATGCGAGACGTCTGAAAAACTTGAGAAGGCAAGGCGTCTTATGGCAATCGGTGGCATAGACTTTCTTCTGCATAAATTTCATGGAGGAGGAGAAGATGAGAAGGCACAAGCAGCTGAGCTCCTTTTGCTCTGCATCAGGGCAGAAGGAAGCTGCAGAAACTACATGGCCATAAGGATTTGTAACTCAAGTGTTGTTCAGCTTCTCCACAGTGAGGTGATTTCAGCAAGGAGTTCTGCAGTTCGTCTGCTTGTTGAACTGCTCTGCCTGAAAAGGTTCTGTCTCCTGTTCGTAACACCAAATGCATCCAAATATGTCTTGTATGTACATGCGCTTCCATCTCACAAAATATTTCAATTGTCACAGAAGGGAAATAGTTGA
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| Protein seq | MAPPPSSLLRDLLAADGFRNRRKPPDSNPPAAPRTTSMPLQHRRPSRPARSQSDVLTRSRLRETNNVGTSDGDGVDAGEEQRTATRRSSASLMSARSYNNNKDSGGGAMRGGSAAAVPALDESVLTALISLVAGAVKRFVRDEGFRASLRGGCMSCLGGESNHRAVLDLRVIVHTVERAASEGLDDPRDLKRASLRLHAMASLDAKEADAVSAAGVPYQRLAACAHLYMSVISKLQEKDHSSAVHVLEAFCLAPHEARTSLLPALWDRLFRSGLSHLKAWRDRESATAASSDTRVKDVEKMFVEAVDDGTRALACYYRDWLLGRSQAMSLPVVPAPPSTVLASALRFSTSTSYDIGSDVACSSGSYSPAVKFALDETPSQYDREIEEEEEAEVDEKTADAESVFHECDGTEPKSYTHSLQTEENELMPDKLANEASERKSEDERSRQPDESTSYVPISDITAIDLPTLEFCEGPDLQSDTDGSQISIFATIPSDFLCPLTRQIFNRPVTIETGQTFERHAIVQWFDKGIRMCPITGQELESLSIPDINRVLKRLIDNWKSEHCKTLNSESTCPEKELTATFVENVLSSECETSEKLEKARRLMAIGGIDFLLHKFHGGGEDEKAQAAELLLLCIRAEGSCRNYMAIRICNSSVVQLLHSEVISARSSAVRLLVELLCLKRFCLLFVTPNASKYVLYVHALPSHKIFQLSQKGNS |
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| Function | Putative E3 ubiquitin-protein ligase LIN [UniProtKB/Swiss-Prot:D1FP53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0584500 | Os04t0584500-01 | Chr04 | 29522376 | 29527451 | + | irgsp1_rep | ||
| CDS seq | ATGGCGCCGCCGCCGTCGTCATTGCTTCGCGACCTCCTCGCCGCTGATGGCTTCAGAAACCGTCGCAAGCCGCCTGACAGTAACCCTCCGGCCGCCCCAAGGACCACGAGCATGCCCCTCCAGCACCGGCGGCCGAGTAGGCCAGCACGGTCGCAGTCCGACGTCCTCACCCGCAGCCGCCTCAGAGAAACAAACAACGTCGGTACTAGCGATGGCGACGGAGTCGACGCCGGCGAGGAGCAGCGGACCGCCACACGGAGGTCATCGGCGTCGCTGATGAGCGCGAGGAGCTACAACAACAACAAGGACAGCGGCGGCGGCGCCATGAGGGGCGGCTCAGCTGCCGCGGTACCGGCTCTCGACGAGTCCGTGCTCACCGCGTTGATCTCCCTGGTCGCGGGAGCCGTGAAGCGGTTCGTCAGGGACGAGGGCTTCCGCGCGTCGCTCCGCGGCGGGTGCATGTCGTGCCTCGGCGGCGAGTCCAACCACCGGGCGGTCCTGGACCTCCGCGTGATCGTGCACACCGTCGAGAGGGCCGCGAGCGAGGGGCTCGACGACCCGCGCGACCTGAAGCGCGCGTCGCTCAGGCTGCACGCCATGGCGTCCCTCGACGCGAAGGAAGCGGACGCGGTGAGCGCGGCCGGCGTGCCCTACCAGCGCCTCGCCGCGTGCGCGCACCTGTACATGTCCGTCATCTCCAAGCTCCAGGAGAAGGACCACTCCTCCGCGGTGCACGTGCTGGAGGCCTTCTGCTTGGCGCCGCACGAGGCCCGCACATCCCTGCTTCCCGCGCTCTGGGACAGGCTCTTCCGCTCGGGCCTCTCGCACCTCAAAGCGTGGCGTGACCGCGAGTCGGCGACCGCGGCGAGCTCGGATACGAGGGTGAAGGACGTGGAGAAGATGTTCGTAGAGGCAGTGGACGATGGCACACGCGCGCTCGCATGCTACTACAGAGATTGGCTTCTGGGGCGCAGCCAAGCCATGTCTCTCCCGGTTGTTCCTGCTCCTCCCAGCACCGTTCTTGCCAGCGCGCTGAGGTTCTCGACGTCGACGTCCTATGACATTGGCTCGGATGTCGCTTGTAGCTCCGGGAGTTACAGTCCAGCTGTAAAGTTTGCGCTCGACGAGACTCCATCACAATATGATCGAGAGATCGAAGAGGAAGAAGAAGCAGAGGTGGACGAGAAGACAGCAGATGCAGAAAGCGTGTTCCATGAGTGCGATGGCACTGAACCGAAGAGCTACACTCACTCACTTCAGACAGAAGAAAACGAGCTAATGCCTGACAAGCTAGCCAACGAGGCATCTGAACGAAAGAGTGAAGATGAACGGAGCAGACAACCAGATGAGTCAACGAGTTATGTGCCAATTTCTGATATCACGGCTATTGACCTTCCTACACTCGAGTTCTGTGAAGGGCCTGATCTCCAGAGTGACACAGATGGCAGTCAAATATCCATTTTTGCCACCATTCCTAGTGATTTCCTCTGTCCACTGACGAGGCAGATCTTCAACCGTCCGGTGACAATCGAGACAGGTCAGACGTTCGAGCGGCATGCTATAGTTCAGTGGTTCGATAAAGGCATCAGAATGTGCCCAATTACAGGTCAAGAACTTGAAAGCCTGTCGATTCCAGACATAAACCGTGTGTTAAAACGCTTGATCGATAACTGGAAGTCCGAACACTGCAAAACTCTGAACTCTGAAAGTACATGTCCTGAAAAGGAGTTAACTGCAACATTCGTAGAGAATGTCCTTTCTTCTGAATGCGAGACGTCTGAAAAACTTGAGAAGGCAAGGCGTCTTATGGCAATCGGTGGCATAGACTTTCTTCTGCATAAATTTCATGGAGGAGGAGAAGATGAGAAGGCACAAGCAGCTGAGCTCCTTTTGCTCTGCATCAGGGCAGAAGGAAGCTGCAGAAACTACATGGCCATAAGGATTTGTAACTCAAGTGTTGTTCAGCTTCTCCACAGTGAGGTGATTTCAGCAAGGAGTTCTGCAGTTCGTCTGCTTGTTGAACTGCTCTGCCTGAAAAGGTTCTGTCTCCTGTTCGTAACACCAAATGCATCCAAATATGTCTTGTATGTACATGCGCTTCCATCTCACAAAATATTTCAATTGTCACAGAAGGGAAATAGTTGA
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| Protein seq | MAPPPSSLLRDLLAADGFRNRRKPPDSNPPAAPRTTSMPLQHRRPSRPARSQSDVLTRSRLRETNNVGTSDGDGVDAGEEQRTATRRSSASLMSARSYNNNKDSGGGAMRGGSAAAVPALDESVLTALISLVAGAVKRFVRDEGFRASLRGGCMSCLGGESNHRAVLDLRVIVHTVERAASEGLDDPRDLKRASLRLHAMASLDAKEADAVSAAGVPYQRLAACAHLYMSVISKLQEKDHSSAVHVLEAFCLAPHEARTSLLPALWDRLFRSGLSHLKAWRDRESATAASSDTRVKDVEKMFVEAVDDGTRALACYYRDWLLGRSQAMSLPVVPAPPSTVLASALRFSTSTSYDIGSDVACSSGSYSPAVKFALDETPSQYDREIEEEEEAEVDEKTADAESVFHECDGTEPKSYTHSLQTEENELMPDKLANEASERKSEDERSRQPDESTSYVPISDITAIDLPTLEFCEGPDLQSDTDGSQISIFATIPSDFLCPLTRQIFNRPVTIETGQTFERHAIVQWFDKGIRMCPITGQELESLSIPDINRVLKRLIDNWKSEHCKTLNSESTCPEKELTATFVENVLSSECETSEKLEKARRLMAIGGIDFLLHKFHGGGEDEKAQAAELLLLCIRAEGSCRNYMAIRICNSSVVQLLHSEVISARSSAVRLLVELLCLKRFCLLFVTPNASKYVLYVHALPSHKIFQLSQKGNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0584500 | RBH | 0.072468 | 0.0 | 0.177120 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49500 | RBH | 0.049007 | 0.0 | 0.045594 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0690600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024400 | RBH | 0.0 | 0.789690 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025150 | RBH | 0.0 | 0.288419 | 0.084312 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024840 | RBH | 0.0 | 0.670920 | 0.354983 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024620 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024810 | RBH | 0.280590 | 0.0 | 0.339156 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0465900 | RBH | 0.0175795 | 0.1427595 | 0.0268185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023580 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0469100 | RBH | 0.0165715 | 0.3158175 | 0.006085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024060 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023860 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023990 | RBH | 0.0 | 1.900170 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024390 | RBH | 0.055102 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024590 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023840 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023750 | RBH | 0.421087 | 59.044380 | 23.668667 |
