Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0580800 | OGI:04086980 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:29317364-29318451 | ||||||||
| Gene Symbol | OsRFPH2-6 | ||||||||||
| DNA seq | GCTAGAATGACTTATATTGTGAAATGGAGGGAGTAGTACACTATTAATATATGATCCTACATCTCATACACGCACAATGTATTAGATTCCGTGCTGAAGCTGGCTGTAAATATATAGCCTGTTTTCCTTCTCTCTTATCTCTTCTCTCTTCCACGTATGCTTATAGCTTACTTGTAGCCTGCCATTGTACTCGCTCTAAACGGGTGCACGTTACCTAGCTCGTCGGATGCAACTATGCGTTAAAGTACACCCGTGGAATTCCAAAATGCCATTAATTTTCGCGTGAGCACAACTATCAATTGATTAGCACCGGTACTGCTTGGTGGTTAGTCGTCCTGATCGGAATCAGTCTGCGGTTGGCCTGCACCCATCCAGCAACAATGGCGAGATGTACAGCCTGAAATGACGAAACTGCCCCCATGGCGCCGTGCCGCGAGACAATCTAGCCGAACCGCCTACTGCCAAGCAGGCCCCTTCGTTGACGTGGCAGCAGGTGGGACCGACAGAGCGGGCACGTCACCTCTCCCAGGTCGATCCACCGGTCGATGCAGCCGATGTGGAAGGCGTGGGTGCAGTTGCCCAGCCGCCTCACCTCGTCCGTCGCCTCCAACCTCTCCAGGCACACCCTGCACGTGGCCGGGTAGCCGCTCTCGCCGTCGTGGCAATCCGCCGACAGGTCGGCGAGTTGCATGTACTCGACCAGCGGGAGGCCCCGCTTCACCGCCTCGGGCTGCAGGCCGTCGTCGCCGAGGGGATCGCGGCGGCGGCCGTGGATGAGCGGCGCGTGGTCCTCGACGGTGTAGGGGAACTCGTAGAGGCCGAGGAAGCAGAGTATCAGCACGAAGGCCAGCGCCACGGCCTGGAGCAGCTTGAACAGCGCGACGATGGGCCGCGGGATCTGGCGGCAGAAGCACACCAGCGGAAAGCTCATGGCACCGTACACACACGCACACGCGCTCCTCTGCTGCAGCTGGAGGCAAGCGAGGGACAGGGGAAGGCGCCGGCAGGAGGAGCGCTTGCCGCGCGCGCGAGGTGCATAGGTGGCGCGGCACACAGACACGCAGCAGCAGTGTCTGGTTTTAGAGGGC
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| CDS seq | ATGAGCTTTCCGCTGGTGTGCTTCTGCCGCCAGATCCCGCGGCCCATCGTCGCGCTGTTCAAGCTGCTCCAGGCCGTGGCGCTGGCCTTCGTGCTGATACTCTGCTTCCTCGGCCTCTACGAGTTCCCCTACACCGTCGAGGACCACGCGCCGCTCATCCACGGCCGCCGCCGCGATCCCCTCGGCGACGACGGCCTGCAGCCCGAGGCGGTGAAGCGGGGCCTCCCGCTGGTCGAGTACATGCAACTCGCCGACCTGTCGGCGGATTGCCACGACGGCGAGAGCGGCTACCCGGCCACGTGCAGGGTGTGCCTGGAGAGGTTGGAGGCGACGGACGAGGTGAGGCGGCTGGGCAACTGCACCCACGCCTTCCACATCGGCTGCATCGACCGGTGGATCGACCTGGGAGAGGTGACGTGCCCGCTCTGTCGGTCCCACCTGCTGCCACGTCAACGAAGGGGCCTGCTTGGCAGTAGGCGGTTCGGCTAG
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| Protein seq | MSFPLVCFCRQIPRPIVALFKLLQAVALAFVLILCFLGLYEFPYTVEDHAPLIHGRRRDPLGDDGLQPEAVKRGLPLVEYMQLADLSADCHDGESGYPATCRVCLERLEATDEVRRLGNCTHAFHIGCIDRWIDLGEVTCPLCRSHLLPRQRRGLLGSRRFG |
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| Function | Brassinosteroid-responsive RING protein 1 [UniProtKB/Swiss-Prot:Q9XF92] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0580800 | Os04t0580800-01 | Chr04 | 29317364 | 29318451 | - | irgsp1_rep | ||
| CDS seq | ATGAGCTTTCCGCTGGTGTGCTTCTGCCGCCAGATCCCGCGGCCCATCGTCGCGCTGTTCAAGCTGCTCCAGGCCGTGGCGCTGGCCTTCGTGCTGATACTCTGCTTCCTCGGCCTCTACGAGTTCCCCTACACCGTCGAGGACCACGCGCCGCTCATCCACGGCCGCCGCCGCGATCCCCTCGGCGACGACGGCCTGCAGCCCGAGGCGGTGAAGCGGGGCCTCCCGCTGGTCGAGTACATGCAACTCGCCGACCTGTCGGCGGATTGCCACGACGGCGAGAGCGGCTACCCGGCCACGTGCAGGGTGTGCCTGGAGAGGTTGGAGGCGACGGACGAGGTGAGGCGGCTGGGCAACTGCACCCACGCCTTCCACATCGGCTGCATCGACCGGTGGATCGACCTGGGAGAGGTGACGTGCCCGCTCTGTCGGTCCCACCTGCTGCCACGTCAACGAAGGGGCCTGCTTGGCAGTAGGCGGTTCGGCTAG
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| Protein seq | MSFPLVCFCRQIPRPIVALFKLLQAVALAFVLILCFLGLYEFPYTVEDHAPLIHGRRRDPLGDDGLQPEAVKRGLPLVEYMQLADLSADCHDGESGYPATCRVCLERLEATDEVRRLGNCTHAFHIGCIDRWIDLGEVTCPLCRSHLLPRQRRGLLGSRRFG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0580800 | RBH | 0.0 | 0.0 | 0.546636 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49160 | RBH | 0.0 | 0.0 | 0.122088 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0682300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024140 | RBH | 0.0 | 0.0 | 0.979153 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0024880 | RBH | 0.0 | 2.199195 | 0.412633 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024580 | RBH | 0.0 | 0.0 | 1.232931 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024490 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0462100 | RBH | 3.0307105 | 1.6511795 | 0.6021435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023310 | RBH | 0.0 | 0.0 | 0.277906 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0466000 | RBH | 3.8115155 | 3.4845125 | 0.2408375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0023780 | RBH | 0.169416 | 0.248485 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023610 | RBH | 0.0 | 6.177992 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023740 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024130 | RBH | 0.136049 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024340 | RBH | 0.0 | 2.835722 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023570 | RBH | 0.0 | 0.0 | 0.343603 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023490 | RBH | 0.0 | 0.0 | 0.0 |
