Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0566600 | OGI:04084590 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:28470386-28474272 | ||||||||
| Gene Symbol | MFS2, OsMFS2, MOF1, OsMOF1 | ||||||||||
| DNA seq | ACACCCCCTCTAGCGTTGAGAGAGAGAGAGAGAGAGGATGTTTTGAGAGAGCACAGCTAGAAGCTTGGCTTCTCGCAACAAGTGCTGCATCTCTAGTGAGCGAGTGAGTGAGAGAGACAGCCTTGGCCTTGGCGTTGGTGGTGTAGCTCCAGCCTCCAAGCATCCATCCATGCTTACATAAGTCAGACAGGGAGGGAGGACCGGAAGGAGGAGGAGAGAAAAAGCGAAGCTTTGGTTCTTTCTTTGCACCACCGGTTGCCTCCGTTGATCTCCTTGTCGATCGCCGGAAGCAAACCGTTGTTGGTGATGGGCAGCGGCGGCGGTGGCTGCGGCAGGAACGGCGCTGTGAGGCAGTACATCAGGTCCAAGGTGCCGAGGCTGAGGTGGACCGGGGAGCTCCACTGCAGCTTCGTCCAAGCCATCGAATTCCTCGGTGGCCAAGACAGTGCGTTTCTTCTTCTTGCTCCTGGCTACGTCCTCTTCATGCACGGCGTTTCATCGTGTATTTGTTTTTCTTTTCTCTGTGTGCATTCGTTGGTAGACTATTTTTCACCCTCTCCAGTCCATGCCTGCATTCCATAGCTATTTATTTTCCATAGCTATTTATTTCCAGGGATTGCTCTTCTTTCAGTTGTGACAGCCATGTTTTATGTTTCCCTCGGTTGTTAGTTTCTTTGATGTCGTCCTAGCTATAGCTTGTTCATGTTGATGTCTTCTTTTTTTCATGAGAGAACAACTTTCTCACAGTACCTTGAATTGTTTTCTGCCTTTCTGTTGCTTGTTACTCTTCGTCCTTTAGGAGTTTAGTATTTTTTTTTTCCTAGCGATCTCTTCGTCAGGCTAACTTGTAAACTTGCTGGTTTGAATTGCAGAGGCTACACCTAAGCTCATTCTTCAGCTCATGGGGGTGAAGGGGCTGACCATATCTCATGTCAAGAGCCACCTCCAGGTTCTTATCCCTTCAGTCTCCTGCAGCCTTCTCTCTCTCTCTCTCTCTCCCAGAGAGCATGCAAATACATAAATTTTGATTTTGTCCATTTATCCTTTTGAAACAGATGTACAGATGCTCCAGGCTCGGCTCCCATGGCACGGGAAGGAGATCAGGTGAGAGATGATTGTTTTTCTTCCATCATTACGTTATTTGGTTCTTCATCCTCCCAAAGCCAGAGGTTTTAATTTGCCTCCCTGTTCCCTGGGGATACGAGATGATAGTAGTTGTGGCAGCAGTAGTTGTTTTTCTAGTGTTATTATGTCAACGCTTTTTGTTGTTTAGTTGGAGTACATTGGTTATAATATTCAGAGGAAAAAGAAGGCTCATGTCCACAGTAGAATGACCATCCAGTTTATTATTATTATTTTTTAACCAAATAGATGCCTTGTTGTTTGTGTGAGCTATTTTTCGGTGTTAATTATGTGGGGGCATCTCTAAACTCCCCTTGCCACATGCCTACTGCGCCATGCAACTAACCAGTCTTACCTTCTCATGGAGTCATGGGGTACCTTCATCATGCAAATCCTCTGTTCAAAAAGATAGGAAGAGCTAGATATATGAGAAAAAGAAATTGTTGTTGCACACTTTAGATGTTGCTAATGGAAAGCCAAACCCCTTTCTTTCATTGTACCATCAGAGATGCAACCACAGCTGCAAAGGAAGCACTCATGTGGTGCTGATGAGCAAGTCCCCAGAGAATTCCTGTGCCCCCCTCTGAAAAGGTTTGGGCCTCAACTTTCCCAACTTTGAATTGTGTTCAAGTTAAAGACAAGCTTTTTGAAGGCCTAATCTTGACACAAAGTCACCTTTTCCCCTTGGGTGTCCATTTACTCTCTTTTTTGGGGTCTTTGGATGAACAGGACCAGGATGGGGACAGAAGCCACATACAAAGGCATGCAAGGAAGCCAAGGAATCAGTGAGATGAGGACTACTGGCACCCAGTACTGCATTGATGATTACATGCAAGCCATGGCAATGGAGAGGAGAATAAAGGAGGAGGGCCTCAGATGGCAGAGGGATGCTGCTGCTGCTGCTGCTGCAGATGGTGGTGCTGCTGCTTCCAACCTCCAAACCGTGGGATGTTCGGTGCAAGAATCTGACCCCTTTAAGGTACATCAGCTGAAAAGAAAAGTTAAAAGAAACATTGGGAAAACTTAATCAAAAGTATCACATTCTCTTGGAATATTAACTGGTTTCACACGCTGACTTACTCATTCTATTCAACCATTTATAAATGGATCTACTGCAATTTAGCTAAGCTCCTACGTACACATTGCATTTGTCAATTTGCCATGCAATATATTAGATTTTTATATATATCTGTAGGGCCCACTTGTCATACATGGATTTGGTCAAGGCGGCAACAAAGTAGTTTGTAAAAAATATTTTTTATTGGGCTGTGCATGTTGTATTGTCTTGACCATACCTATATTTTCTATGTTCCTGATTTTGAATATCTTAGGTTGTTTGACTACTGTACAATCCGTATCCTGCTGCATTTTTAGAATTGTCAGTAAATGTTTGTTCCCTTTATCTTACTACATGTGCAAAACCCAGATAAGCTCATGAATACTTGTAGTAGTAATTTCAGAAGGACAAGGATGCACATGCACTGATATGAGAAGACTGCGAATATAGTCCTTAAAAGTTGAAACCCCCTGTCTTTAACAGTGATGACCCAAATAACTCCAGGCATTTACCTCACATCGCAGTAGTGATTTGTCATTTGTGGTAGTAGCGTTCTGCAGCCTTCAATTGAAAGCCTTCCATGTTGCACCCAGTAGAATTCATGCTGATAAAAGTGCAGACAGAATTAACCCAATTAAGACTTCACTGTGGTTTACCTGAGTCTGAAAAAACTGCTTATATCCTACGGCTTCTGGAACGCATCAATAGCGTAGATGTTGTACGTTACGGCACAGATCTGCCGATCCTTGTGATTTTACTGCAGCAAGGAAAACGATTTTCAGCAGGGTCAAGTCCTGGTAAAAGTTGCACGTTCAAGGAAATAAATTTGATAGTTACTGCATGCGTACTTCTCCTTAGGGCAGCCACAATGTTTATCTATAGGCTCTCTACAAGAGATCCATGTCAGCATATTTTCCTACTTGGAAGAGATTAAATGAAGAGAGAGAGCAAAGCTATCTACTAACCTGGAGATAGTCTATAGAGAAGAGGCAATGGATTAGAGAGCTATAGATACCCATGTAGACATACCATTGAAGTGGTTTACTATTAATCTAATCTATTGCTGAGATGTACATTTTTTATAGATAGCACCTTACTTTATCATTGCGGGTGCTTTTAGACCATACTGTCATCAATGCCCATTATCCTAAGACCATTTTTTGTCATCAATGAAGGAATTTAATCCATCTAAACTGTTGCTTTCATTGGTGTTGTGCAGATCATCAAACCAGAAGTGCACCATCTTGGTCCCGTGTTGAAGCTGCAATGCTCCAAGGTGGAGAACAGTGGATTCATCTCCAGCAGCACCGGCACGGCTGCAAGGGATCAACCGGAGCCGCCGCCGCTGGAGAAATGTTCGCTGTCACTCTCCCTCGGTCCAGACCCCAAATGCATGCCGGCGATCGCCTCGTCGCCGAGCGAAAGCAGCTGCATCCTCTCGTCGTCGTCCAGGAGCTTCAGCGACTGCTCCGGGAACTCAGGTTGTCTTGTTGCCCCGGGTGTGAACTTGGAACTCTCCATGTCCATCTGTGGATCTTAGACCTTGGTTCCAGTAATCCAGTTTTTGTACATCAGTCAGTCTCACATGTCGGTTTTGAACTTTTAATCACCTGCTTCAGTGTTGATACGGTGATACCCTGATCATGTTAGGAAGTTAGCCAATTGCAAGATGTCAGTGTAGGGCCTTGAGTATGCAGTGCAATGATCC
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| CDS seq | ATGGGCAGCGGCGGCGGTGGCTGCGGCAGGAACGGCGCTGTGAGGCAGTACATCAGGTCCAAGGTGCCGAGGCTGAGGTGGACCGGGGAGCTCCACTGCAGCTTCGTCCAAGCCATCGAATTCCTCGGTGGCCAAGACAAGGCTACACCTAAGCTCATTCTTCAGCTCATGGGGGTGAAGGGGCTGACCATATCTCATGTCAAGAGCCACCTCCAGATGTACAGATGCTCCAGGCTCGGCTCCCATGGCACGGGAAGGAGATCAGAGATGCAACCACAGCTGCAAAGGAAGCACTCATGTGGTGCTGATGAGCAAGTCCCCAGAGAATTCCTGTGCCCCCCTCTGAAAAGGACCAGGATGGGGACAGAAGCCACATACAAAGGCATGCAAGGAAGCCAAGGAATCAGTGAGATGAGGACTACTGGCACCCAGTACTGCATTGATGATTACATGCAAGCCATGGCAATGGAGAGGAGAATAAAGGAGGAGGGCCTCAGATGGCAGAGGGATGCTGCTGCTGCTGCTGCTGCAGATGGTGGTGCTGCTGCTTCCAACCTCCAAACCGTGGGATGTTCGGTGCAAGAATCTGACCCCTTTAAGATCATCAAACCAGAAGTGCACCATCTTGGTCCCGTGTTGAAGCTGCAATGCTCCAAGGTGGAGAACAGTGGATTCATCTCCAGCAGCACCGGCACGGCTGCAAGGGATCAACCGGAGCCGCCGCCGCTGGAGAAATGTTCGCTGTCACTCTCCCTCGGTCCAGACCCCAAATGCATGCCGGCGATCGCCTCGTCGCCGAGCGAAAGCAGCTGCATCCTCTCGTCGTCGTCCAGGAGCTTCAGCGACTGCTCCGGGAACTCAGGTTGTCTTGTTGCCCCGGGTGTGAACTTGGAACTCTCCATGTCCATCTGTGGATCTTAG
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| Protein seq | MGSGGGGCGRNGAVRQYIRSKVPRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTISHVKSHLQMYRCSRLGSHGTGRRSEMQPQLQRKHSCGADEQVPREFLCPPLKRTRMGTEATYKGMQGSQGISEMRTTGTQYCIDDYMQAMAMERRIKEEGLRWQRDAAAAAAADGGAAASNLQTVGCSVQESDPFKIIKPEVHHLGPVLKLQCSKVENSGFISSSTGTAARDQPEPPPLEKCSLSLSLGPDPKCMPAIASSPSESSCILSSSSRSFSDCSGNSGCLVAPGVNLELSMSICGS |
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| Function | Putative Myb family transcription factor At1g14600 [UniProtKB/Swiss-Prot:Q700D9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0566600 | Os04t0566600-01 | Chr04 | 28470386 | 28474272 | + | irgsp1_rep | ||
| CDS seq | ATGGGCAGCGGCGGCGGTGGCTGCGGCAGGAACGGCGCTGTGAGGCAGTACATCAGGTCCAAGGTGCCGAGGCTGAGGTGGACCGGGGAGCTCCACTGCAGCTTCGTCCAAGCCATCGAATTCCTCGGTGGCCAAGACAAGGCTACACCTAAGCTCATTCTTCAGCTCATGGGGGTGAAGGGGCTGACCATATCTCATGTCAAGAGCCACCTCCAGATGTACAGATGCTCCAGGCTCGGCTCCCATGGCACGGGAAGGAGATCAGAGATGCAACCACAGCTGCAAAGGAAGCACTCATGTGGTGCTGATGAGCAAGTCCCCAGAGAATTCCTGTGCCCCCCTCTGAAAAGGACCAGGATGGGGACAGAAGCCACATACAAAGGCATGCAAGGAAGCCAAGGAATCAGTGAGATGAGGACTACTGGCACCCAGTACTGCATTGATGATTACATGCAAGCCATGGCAATGGAGAGGAGAATAAAGGAGGAGGGCCTCAGATGGCAGAGGGATGCTGCTGCTGCTGCTGCTGCAGATGGTGGTGCTGCTGCTTCCAACCTCCAAACCGTGGGATGTTCGGTGCAAGAATCTGACCCCTTTAAGATCATCAAACCAGAAGTGCACCATCTTGGTCCCGTGTTGAAGCTGCAATGCTCCAAGGTGGAGAACAGTGGATTCATCTCCAGCAGCACCGGCACGGCTGCAAGGGATCAACCGGAGCCGCCGCCGCTGGAGAAATGTTCGCTGTCACTCTCCCTCGGTCCAGACCCCAAATGCATGCCGGCGATCGCCTCGTCGCCGAGCGAAAGCAGCTGCATCCTCTCGTCGTCGTCCAGGAGCTTCAGCGACTGCTCCGGGAACTCAGGTTGTCTTGTTGCCCCGGGTGTGAACTTGGAACTCTCCATGTCCATCTGTGGATCTTAG
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| Protein seq | MGSGGGGCGRNGAVRQYIRSKVPRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTISHVKSHLQMYRCSRLGSHGTGRRSEMQPQLQRKHSCGADEQVPREFLCPPLKRTRMGTEATYKGMQGSQGISEMRTTGTQYCIDDYMQAMAMERRIKEEGLRWQRDAAAAAAADGGAAASNLQTVGCSVQESDPFKIIKPEVHHLGPVLKLQCSKVENSGFISSSTGTAARDQPEPPPLEKCSLSLSLGPDPKCMPAIASSPSESSCILSSSSRSFSDCSGNSGCLVAPGVNLELSMSICGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0566600 | RBH | 0.347130 | 0.142879 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47890 | RBH | 0.234747 | 0.096098 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0700300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023280 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0024020 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023740 | RBH | 0.000000 | 0.0 | 0.757957 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023630 | RBH | 0.0 | 0.0 | 0.458687 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0447200 | RBH | 1.0723045 | 0.023282 | 0.3139995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022420 | RBH | 0.0 | 0.0 | 0.173035 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0450900 | RBH | 0.697708 | 0.032413 | 3.196488 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022930 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022760 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023280 | RBH | 0.147108 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023470 | RBH | 0.080045 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022700 | RBH | 0.0 | 0.0 | 0.767023 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022580 | RBH | 0.0 | 0.0 | 0.912042 |
